AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_sum_all071_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237594
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0315	94	hypothetical protein
#1	TM1828	111	riboflavin-specific deaminase

Motif 1
GGGGCCGACGGTGAAAGTCCGGATGGGAGA	1	24	1
AAGTCCGGATGGGAGAGAGCGTGATGTGGA	1	38	1
TATGGGACCCGAGAGGGTCCCTTTTCTTTT	1	73	1
CTTTTACACAGGGAGGGTGTTGT       	1	98	1
          **********
MAP Score: 3.85088

Motif 2
ATTTTCTAGCAAGGAGGTGGATTTT      	0	4	0
GAATTCCGGGGCCGACGGTGAAAGTCCGGAT	1	17	1
AGTCCGGATGGGAGAGAGCGTGATGTGGAGG	1	39	1
AGAGCGTGATGTGGAGGTTATATGGGACCCG	1	53	1
TTATATGGGACCCGAGAGGGTCCCTTTTCTT	1	70	1
TCTTTTACACAGGGAGGGTGTTGT       	1	97	1
          * *********
MAP Score: 0.45173