AlignACE 3.0 10/20/99
AlignACE2 -i TM/TM_sum_all078_100.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944237697
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TM0863	82	ribosomal protein L9
#1	TM1820	55	GMP synthase

Motif 1
CATGCTTGATTGATATAATCTTGAAAAGAG	0	22	0
CAATCAAGCATGATAGAATAGATAAGGAAA	0	40	1
AATCTGAATATGATTTAATAGTATCAAAAG	1	17	1
          **********
MAP Score: 3.57725

Motif 2
CTCCTCTTTTCAAGATTATATCAATCAAGCA	0	19	1
ATCAATCAAGCATGATAGAATAGATAAGGAA	0	38	1
TAAATCATATTCAGATTTAACTCA       	1	3	0
TAAATCTGAATATGATTTAATAGTATCAAAA	1	15	1
          ******* ***
MAP Score: 0.249077