AlignACE 3.0 10/20/99 AlignACE2 -i TP/TP_operons013_300.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944239345 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TP0278 127 T. pallidum predicted coding region TP0278 #1 TP0279 45 ribosomal protein S1 (rpsA) #2 TP0283 177 lipopolysaccharide core biosynthesis protein (kdtB) #3 TP0284 104 T. pallidum predicted coding region TP0284 #4 TP0289 22 T. pallidum predicted coding region TP0289 #5 TP0290 54 conserved hypothetical protein #6 TP0291 36 T. pallidum predicted coding region TP0291 #7 TP0372 121 general stress protein (ctc) #8 TP0673 177 glutamyl-tRNA synthetase (gltX) #9 TP0976 47 T. pallidum predicted coding region TP0976 #10 TP0979 169 conserved hypothetical protein #11 TP1011 34 peptidyl-tRNA hydrolase (pth) #12 TP1012 204 RNA polymerase sigma-43 factor (sigA) Motif 1 ATCCTGAGTGCTGTGAGGCGCTCGCGCGTACCGCCC 10 135 0 GCTTGCGCCCCGGAGGGGGATGTGCGATAATCGGCC 8 134 1 AGCGTTCGCGCCGTGCGGTGCGCACGTTGTGTAGCT 2 17 1 TAATCGGCCCCCGGGGAGGGCGAGCG 8 161 1 CACCGATTTTCCGCGAGGAGTTGACGGAGTGGGTGC 2 78 1 AAGGGGAAGACAGGGAGGCGGTCACGGTGCATGAGG 8 70 1 CGCGGCACACACGCGCGGTATTTGCGGAGAACAAAG 10 78 0 AAGCGGCATCCTGCGTGGTAGGAAGGGGAAGACAGG 8 48 1 TTCAGGGCCTCACAGGGATGCTTGCGCCCCGGAGGG 8 115 1 AGCTGGGCCGTGCGCGCATGTCCGCG 10 0 1 GAGGAGAAGCGTTCGCGCCGTGCGGTG 2 1 1 ACAGAGGGTCCAGTGGCGTGATAGGGACACCGAACA 12 144 1 TTCCTGAACAACGTGAGGGGTTGCCGTGC 2 158 1 CCACAGTCTTCCGAGGAAGACGAGCGC 0 1 0 CTGTAGCGCGCCGTGGGAAAGGGAGGTATGCACAGA 12 113 1 TGCCTACACGCACCGCGCGGGGCGCATTCTATACAT 12 54 1 TGTAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACC 2 46 1 GCAGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCA 0 47 1 GTTGCGCTTCCGGCGTACCAGGGCGGTACGCGCGAG 10 115 1 GCGCAAGGGAACAGGTGGTGCGTAGGTTTGCGCG 9 8 0 * * * ** * * *** MAP Score: 40.6132 Motif 2 GGGCGGTACGCGCGAGCGCCTCACAGCACTCA 10 135 1 CTACACGCACCGCGCGGGGCGCATTCTATACA 12 57 1 CGTTCTAGTTCGCGTGCCCCTGTGCCCGCAAT 10 41 1 AGCTACACAACGTGCGCACCGCACGGCGCGAA 2 21 0 CGCGTCCTGCTCCTATTTCATA 11 22 0 CCTCATGCACCGTGACCGCCTCCCTGTCTTCC 8 74 0 GCGTGTGTGCCGCGCGTTGCGCTTCCGGCGTA 10 100 1 CGCGCATGTCCGCGTCGGCCGTTCTAGTTCGC 10 22 1 CGCGGACATGCGCGCACGGCCCAGCT 10 4 0 CACCGCACGGCGCGAACGCTTCTCCTC 2 5 0 ACCGATTTTCCGCGAGGAGTTGACGGAGTGGG 2 79 1 TGCAATCAACCGCGTGAAGCGGCATCCTGCGT 8 32 1 TGTAGTTCGCCGCATGTTCCTGAACAACGTGA 2 142 1 CAAGCATCCCTGTGAGGCCCTGAAAATTACAC 8 107 0 GGCGCTCGCGCGTACCGCCCTGGTACGCCGGA 10 123 0 CTTTGTTCTCCGCAAATACCGCGCGTGTGTGC 10 78 1 CACAGGGATGCTTGCGCCCCGGAGGGGGATGT 8 125 1 GCTCGCCCTCCCCGGGGGCCGATTATCGCACA 8 154 0 GCGCTCGTCTTCCTCGGAAGACTGT 0 3 1 AGAGAGCTCGCGTGAACACCGATTTTCCGCGA 2 62 1 TCCTGAACAACGTGAGGGGTTGCCGTGC 2 159 1 ACCTCCCTTTCCCACGGCGCGCTACAGTTCTC 12 108 0 AGCTAGGAAGCGTAGAGAGCTCGCGTGAACAC 2 49 1 GGCCGATTATCGCACATCCCCCTCCGGGGCGC 8 138 0 CTGGACCCTCTGTGCATACCTCCCTTTCCCAC 12 125 0 CGCGCAAACCTACGCACCACCT 9 0 1 CGTCCCAGTTTGCGGCGTGTTCGCTTTCTGTG 7 83 1 TGACCGCCTCCCTGTCTTCCCCTTCCTACCAC 8 62 0 TATTTATATTCGCACCCACTCCGTCAACTCCT 2 93 0 TCTGAGACTGTTTGCGCTCCTCGTCTGTTGTC 0 83 0 **** ** **** MAP Score: 38.8109 Motif 3 AGCTGGGCCGTGCGCGCATGTCCGC 10 4 1 CGTTCGCGCCGTGCGGTGCGCACGTTGTGTA 2 19 1 CGGCGTACCAGGGCGGTACGCGCGAGCGCCT 10 125 1 CCGTGGGAAAGGGAGGTATGCACAGAGGGTC 12 123 1 CAGACAACAGACGAGGAGCGCAAACAGTCTC 0 81 1 TGTATAGAATGCGCCCCGCGCGGTGCGTGTA 12 58 0 TACCGCGCGTGTGTGCCGCGCGTTGCGCTTC 10 94 1 CTTCACGTTTGCGCCGTATGCCTACACGCAC 12 36 1 ACTCGTTATGAGGAGGAACGC 12 0 0 GAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 12 108 1 GCGCCCCGGAGGGGGATGTGCGATAATCGGC 8 138 1 TAATCGGCCCCCGGGGAGGGCGAGCG 8 161 1 GGGGAAGACAGGGAGGCGGTCACGGTGCATG 8 72 1 CCTGAGTGCTGTGAGGCGCTCGCGCGTACCG 10 138 0 AGAGGGCAGTGCTTTTTTAGGG 6 1 1 GTCCCAGTTTGCGGCGTGTTCGCTTTCTGTG 7 84 1 GAGTGATCTTCGGGGCTGTGCTTTTAAAGTT 3 54 1 CGCGTCCTGCTCCTATTTCATA 11 22 0 GCAAGGGAACAGGTGGTGCGTAGGTTTGCGC 9 11 0 TATGCACAGAGGGTCCAGTGGCGTGATAGGG 12 139 1 ATCCCCCTCCGGGGCGCAAGCATCCCTGTGA 8 124 0 TCTTCCGAGGAAGACGAGCGC 0 0 0 GCAATCAACCGCGTGAAGCGGCATCCTGCGT 8 33 1 CCGATTTTCCGCGAGGAGTTGACGGAGTGGG 2 80 1 CATGTGGGGAAGGGAGTGCGCTGGTGATCAG 0 53 1 TAGCTAGGAAGCGTAGAGAGCTCGCGTGAAC 2 48 1 GATATCTTTGGGACGTCGGCAAGTGGTAAG 7 9 1 ATTGCGGGCACAGGGGCACGCGAACTAGAAC 10 42 0 TGGTGCAGTACGCTGAAGTAAT 4 9 0 CAACGTGAGGGGTTGCCGTGC 2 166 1 *** ******* MAP Score: 37.6281 Motif 4 GAGAACTGTAGCGCGCCGTGGGAAAGGGAGGT 12 108 1 AGCTGGGCCGTGCGCGCATGTCCG 10 2 1 GGAGAAGCGTTCGCGCCGTGCGGTGCGCACGT 2 12 1 ACATCCCCCTCCGGGGCGCAAGCATCCCTGTG 8 125 0 ATCTTCACGTTTGCGCCGTATGCCTACACGCA 12 34 1 TACCGCGCGTGTGTGCCGCGCGTTGCGCTTCC 10 94 1 AATGCGCCCCGCGCGGTGCGTGTAGGCATACG 12 50 0 TAATCGGCCCCCGGGGAGGGCGAGCG 8 161 1 CTAATATCCTGAGTGCTGTGAGGCGCTCGCGC 10 144 0 TCCATGTGGGGAAGGGAGTGCGCTGGTGATCA 0 51 1 CCGTCCCAGTTTGCGGCGTGTTCGCTTTCTGT 7 82 1 AAGGGAACAGGTGGTGCGTAGGTTTGCGCG 9 8 0 TCCGGCGTACCAGGGCGGTACGCGCGAGCGCC 10 123 1 ACATCAGAGGCGTATGAAATAGGAGC 11 4 1 TACCGCCCTGGTACGCCGGAAGCGCAACGCGC 10 111 0 AGAGGGCAGTGCTTTTTTAGGGA 6 1 1 ACAGAGGGTCCAGTGGCGTGATAGGGACACCG 12 144 1 TTTTTGTGTAGTTCGCCGCATGTTCCTGAACA 2 136 1 GAGTGATCTTCGGGGCTGTGCTTTTAAAGTTC 3 54 1 ATTGCGGGCACAGGGGCACGCGAACTAGAACG 10 41 0 CGCGAGGAGTTGACGGAGTGGGTGCGAATATA 2 89 1 TGGTGCAGTACGCTGAAGTAAT 4 10 0 TCAGAACACTCATGGGCGGATGATGGA 0 110 1 ATTGCATGAGCTGAGTATGTGATGATTCT 3 7 1 GCGCCCCGGAGGGGGATGTGCGATAATCGGCC 8 138 1 CCCCTTCCTACCACGCAGGATGCCGCTTCACG 8 44 0 AGGGAGGCGGTCACGGTGCATGAGGAGTGTAA 8 81 1 * ******** * MAP Score: 35.2136 Motif 5 TTCCGGCGTACCAGGGCGGTACGCGCGAGCGCCTCA 10 122 1 TCAGAACACTCATGGGCGGATGATGGA 0 110 1 GAGGAGAAGCGTTCGCGCCGTGCGGTGCGCACGTT 2 9 1 TAGAATGCGCCCCGCGCGGTGCGTGTAGGCATACGG 12 49 0 ATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 12 103 1 CCGCGCGTGTGTGCCGCGCGTTGCGCTTCCGGCGTA 10 96 1 TTCGCGTGCCCCTGTGCCCGCAATGGTTGCTTTGTT 10 49 1 GGCACGCGAACTAGAACGGCCGACGCGGACATGCGC 10 23 0 CATATCTTCACGTTTGCGCCGTATGCCTACACGCAC 12 31 1 TCGGTGTTCACGCGAGCTCTCTACGCTTCCTAGCTA 2 48 0 AGCTGGGCCGTGCGCGCATGTCCGCGT 10 1 1 GCGCGGCACACACGCGCGGTATTTGCGGAGAACAAA 10 79 0 CTTCCCCTTCCTACCACGCAGGATGCCGCTTCACGC 8 43 0 ACCACCTGTTCCCTTGCGCAACAAGGAAACAG 9 25 1 CGCTCGCCCTCCCCGGGGGCCGATTA 8 161 0 TTACACTCCTCATGCACCGTGACCGCCTCCCTGTCT 8 77 0 TGCTTGCGCCCCGGAGGGGGATGTGCGATAATCGGC 8 133 1 CAGTTTGCGGCGTGTTCGCTTTCTGTGCATGGAGGA 7 88 1 GACAACAGACGAGGAGCGCAAACAGTCTCAGAACAC 0 83 1 ATTGCATGAGCTGAGTATGTGATGATTCTT 3 4 1 GCACCCACTCCGTCAACTCCTCGCGGAAAATCGGTG 2 78 0 GGGCTAATATCCTGAGTGCTGTGAGGCGCTCGCGCG 10 143 0 TCCTGAACAACGTGAGGGGTTGCCGTGC 2 159 1 TGTTTTTTGTGTAGTTCGCCGCATGTTCCTGAACAA 2 133 1 GATATCTTTGGGACGTCGGCAAGTGGTAAGCCAACG 7 10 1 CAGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCAG 0 48 1 * * **** **** MAP Score: 32.6012 Motif 6 TGCGCACGTTGTGTAGCTAGGAAGCGTAGAGAGCTCGCGTGAAC 2 35 1 GGGCCTCACAGGGATGCTTGCGCCCCGGAGGGGGATGTGCGATA 8 119 1 TGCGCCCCGCGCGGTGCGTGTAGGCATACGGCGCAAACGTGAAG 12 36 0 CTGTTTCCTTGTTGCGCAAGGGAACAGGTGGTGCGTAGGTTTGC 9 13 0 CCTGAGTGCTGTGAGGCGCTCGCGCGTACCGCCCTGGTACGCCG 10 125 0 GGGGAAGACAGGGAGGCGGTCACGGTGCATGAGGAGTGTAATTT 8 72 1 CCGATTTTCCGCGAGGAGTTGACGGAGTGGGTGCGAATATAAAT 2 80 1 ATTGCGGGCACAGGGGCACGCGAACTAGAACGGCCGACGCGGAC 10 29 0 GGTATTTGCGGAGAACAAAGCAACCATTGCGGGCACAGGGGCAC 10 54 0 CGGCGCAAACGTGAAGATATGACTCGTTATGAGGAGGAACGC 12 8 0 GGCAGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCAGACAACA 0 46 1 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCCGTT 10 1 1 ATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCACA 12 103 1 GATCTGTTCGGTGTCCCTATCACGCCACTGGACCCTCTGTGCAT 12 140 0 CCGTCCCAGTTTGCGGCGTGTTCGCTTTCTGTGCATGGAGGATT 7 82 1 TACGCCGGAAGCGCAACGCGCGGCACACACGCGCGGTATTTGCG 10 88 0 GAGGAGAAGCGTTCGCGCCGTGCGGTGCGCACGTTGT 2 3 1 TTCTCACTCGGTTGAGTGATCTTCGGGGCTGTGCTTTTAAAGTT 3 41 1 TTGTTTTTTGGGTGTGCACTTGTTCAAGTTCAGAGGTGATGTTG 5 20 1 * * ** ** * * ** MAP Score: 25.5152 Motif 7 GCGCTCGTCTTCCTCGGAAGA 0 0 1 TCCCCACATGGACTGCCGCTTATTTGCCACA 0 32 0 GTGGGGAAGGGAGTGCGCTGGTGATCAGACA 0 56 1 ACTGTTTGCGCTCCTCGTCTGTTGTCTGATC 0 78 0 CTTCCGTTTTCTGCCCTGTACTTCCCTTC 1 8 1 GAGGAGAAGCGTTCGCGCCGTGCGGTGCG 2 8 1 GCTACACAACGTGCGCACCGCACGGCGCGAA 2 21 0 GAAGCGTAGAGAGCTCGCGTGAACACCGATT 2 55 1 ACTCCGTCAACTCCTCGCGGAAAATCGGTGT 2 77 0 GTTTTTTGTGTAGTTCGCCGCATGTTCCTGA 2 134 1 TGTTTTTTGGGTGTGCACTTGTTCAAGTTCA 5 21 1 CCTAAAAAAGCACTGCCCTCT 6 0 0 AGTTTGCGGCGTGTTCGCTTTCTGTGCATGG 7 89 1 CCGCCTCCCTGTCTTCCCCTTCCTACCACGC 8 60 0 ACAGGGATGCTTGCGCCCCGGAGGGGGATGT 8 126 1 CGCTCGCCCTCCCCGGGGGCCGATTA 8 161 0 AGGGAACAGGTGGTGCGTAGGTTTGCGCG 9 8 0 AGCTGGGCCGTGCGCGCATGTCCGCG 10 5 1 GTGCGCGCATGTCCGCGTCGGCCGTTCTAGT 10 19 1 TCGGCCGTTCTAGTTCGCGTGCCCCTGTGCC 10 36 1 GTTCGCGTGCCCCTGTGCCCGCAATGGTTGC 10 48 1 TCTCCGCAAATACCGCGCGTGTGTGCCGCGC 10 84 1 CGCGCGTGTGTGCCGCGCGTTGCGCTTCCGG 10 97 1 CGCTCGCGCGTACCGCCCTGGTACGCCGGAA 10 122 0 GTGCTGTGAGGCGCTCGCGCGTACCGCCCTG 10 133 0 ATATCTTCACGTTTGCGCCGTATGCCTACAC 12 32 1 TGCCTACACGCACCGCGCGGGGCGCATTCTA 12 54 1 AAGAGAACTGTAGCGCGCCGTGGGAAAGGGA 12 106 1 CCTCTGTGCATACCTCCCTTTCCCACGGCGC 12 120 0 * ********* MAP Score: 17.5904 Motif 8 CCACAGTCTTCCGAGGAAGACGAGCGC 0 3 0 AGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCA 0 49 1 CAGACAACAGACGAGGAGCGCAAACAGTCTCAGA 0 81 1 GAGGAGAAGCGTTCGCGCCGTGCGG 2 1 1 AGCGTTCGCGCCGTGCGGTGCGCACGTTGTGTAG 2 17 1 TAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACC 2 48 1 CCGATTTTCCGCGAGGAGTTGACGGAGTGGGTGC 2 80 1 GGAACATGCGGCGAACTACACAAAAAACAGGCAG 2 128 0 GAGTGATCTTCGGGGCTGTGCTTTTAAAGTTCAG 3 54 1 TGTTCAAGTTCAGAGGTGATGTTG 5 40 1 AGAGGGCAGTGCTTTTTTAGGGAAA 6 1 1 GAAAGCGAACACGCCGCAAACTGGGACGGTAGGA 7 77 0 GCGTGGTAGGAAGGGGAAGACAGGGAGGCGGTCA 8 60 1 TTCAGGGCCTCACAGGGATGCTTGCGCCCCGGAG 8 115 1 GCTTGCGCCCCGGAGGGGGATGTGCGATAATCGG 8 134 1 TAATCGGCCCCCGGGGAGGGCGAGCG 8 161 1 GCAAGGGAACAGGTGGTGCGTAGGTTTGCGCG 9 8 0 AGCTGGGCCGTGCGCGCATGTCCGCG 10 2 1 ACTAGAACGGCCGACGCGGACATGCGCGCACGGC 10 16 0 ATTGCGGGCACAGGGGCACGCGAACTAGAACGGC 10 39 0 GAAGCGCAACGCGCGGCACACACGCGCGGTATTT 10 91 0 CCGCCCTGGTACGCCGGAAGCGCAACGCGCGGCA 10 107 0 TCCGGCGTACCAGGGCGGTACGCGCGAGCGCCTC 10 123 1 ATCCTGAGTGCTGTGAGGCGCTCGCGCGTACCGC 10 137 0 ACATCAGAGGCGTATGAAATAGGAGCAG 11 4 1 CGTATGAAATAGGAGCAGGACGCG 11 20 1 GTGTAGGCATACGGCGCAAACGTGAAGATATGAC 12 29 0 AATGCGCCCCGCGCGGTGCGTGTAGGCATACGGC 12 48 0 GAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTAT 12 108 1 CCGTGGGAAAGGGAGGTATGCACAGAGGGTCCAG 12 123 1 ACAGAGGGTCCAGTGGCGTGATAGGGACACCGAA 12 144 1 TACGATAAACCAGAGGAGATCTGTTCGGTGTCCC 12 167 0 *** ** * *** * MAP Score: 15.6169 Motif 9 CAGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCAGACAACAG 0 48 1 CATGAGTGTTCTGAGACTGTTTGCGCTCCTCGTCTGTTGTCTG 0 81 0 AAACGAAGAAGGGAAGTACAGGGCAGAAAACGGAAG 1 3 0 GAGGAGAAGCGTTCGCGCCGTGCGGTGCGCACGTT 2 2 1 CCTGTTTTTTGTGTAGTTCGCCGCATGTTCCTGAACAACGTGA 2 131 1 TCACTCGGTTGAGTGATCTTCGGGGCTGTGCTTTTAAAGTTCA 3 44 1 AAACCTGTCTGTGCAATCAACCGCGTGAAGCGGCATCCTGCGT 8 21 1 GCGGCATCCTGCGTGGTAGGAAGGGGAAGACAGGGAGGCGGTC 8 50 1 TGCATGAGGAGTGTAATTTTCAGGGCCTCACAGGGATGCTTGC 8 97 1 CTTGCGCCCCGGAGGGGGATGTGCGATAATCGGCCCCCGGGGA 8 135 1 CGCGCAAACCTACGCACCACCTGTTCCCTTGCGC 9 1 1 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCCGT 10 1 1 TCCGCGTCGGCCGTTCTAGTTCGCGTGCCCCTGTGCCCGCAAT 10 30 1 CCTGGTACGCCGGAAGCGCAACGCGCGGCACACACGCGCGGTA 10 94 0 CGTACCAGGGCGGTACGCGCGAGCGCCTCACAGCACTCAGGAT 10 128 1 CGTTTGCGCCGTATGCCTACACGCACCGCGCGGGGCGCATTCT 12 41 1 GAAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTA 12 98 1 GGTATGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAACA 12 137 1 * * * **** *** MAP Score: 14.5575 Motif 10 GCGCTCGTCTTCCTCGGAAGACTGTGGCAAATA 0 2 1 TCCATGTGGGGAAGGGAGTGCGCTGGTGATCAGACAACAGA 0 51 1 ACAACGTGCGCACCGCACGGCGCGAACGCTTCTCCTC 2 6 0 TAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACCGATTTTC 2 48 1 GCACGGCAACCCCTCACGTTGTTCAGGAACA 2 156 0 AATCCTCCATGCACAGAAAGCGAACACGCCGCAAACTGGGA 7 85 0 AGACAGGGAGGCGGTCACGGTGCATGAGGAGTGTAATTTTC 8 77 1 GGGCCTCACAGGGATGCTTGCGCCCCGGAGGGGGATGTGCG 8 119 1 CGCTCGCCCTCCCCGGGGGCCGATTATCGCAC 8 155 0 TTGCGCAAGGGAACAGGTGGTGCGTAGGTTTGCGCG 9 5 0 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCCG 10 2 1 GTCCGCGTCGGCCGTTCTAGTTCGCGTGCCCCTGTGCCCGC 10 29 1 GCTTTGTTCTCCGCAAATACCGCGCGTGTGTGCCGCGCGTT 10 77 1 CGCGTGTGTGCCGCGCGTTGCGCTTCCGGCGTACCAGGGCG 10 99 1 CGGCGTACCAGGGCGGTACGCGCGAGCGCCTCACAGCACTC 10 125 1 CTTCACGTTTGCGCCGTATGCCTACACGCACCGCGCGGGGC 12 36 1 TACCTCCCTTTCCCACGGCGCGCTACAGTTCTCTTGATTCT 12 100 0 AGGGAGGTATGCACAGAGGGTCCAGTGGCGTGATAGGGACA 12 132 1 ** * * **** * * MAP Score: 11.5859 Motif 11 TCGGAAGACTGTGGCAAATAAGCGGCAGTCCATGTGGGGAA 0 23 1 GGCAGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCAGACA 0 46 1 GAGGAGAAGCGTTCGCGCCGTGCGGTGCGCACGT 2 3 1 GTGTTCACGCGAGCTCTCTACGCTTCCTAGCTACACAACGT 2 40 0 TCACTCGGTTGAGTGATCTTCGGGGCTGTGCTTTTAAAGTT 3 44 1 ATCCTACCGTCCCAGTTTGCGGCGTGTTCGCTTTCTGTGCA 7 76 1 AAACCTGTCTGTGCAATCAACCGCGTGAAGCGGCATCCTGC 8 21 1 GGGGAAGACAGGGAGGCGGTCACGGTGCATGAGGAGTGTAA 8 72 1 TGCATGAGGAGTGTAATTTTCAGGGCCTCACAGGGATGCTT 8 97 1 GGGCCTCACAGGGATGCTTGCGCCCCGGAGGGGGATGTGCG 8 119 1 GGAGGGGGATGTGCGATAATCGGCCCCCGGGGAGGGCGAGC 8 145 1 GGCCGACGCGGACATGCGCGCACGGCCCAGCT 10 1 0 ACAGGGGCACGCGAACTAGAACGGCCGACGCGGACATGCGC 10 23 0 TCTAGTTCGCGTGCCCCTGTGCCCGCAATGGTTGCTTTGTT 10 44 1 GCAAATACCGCGCGTGTGTGCCGCGCGTTGCGCTTCCGGCG 10 89 1 CCTGAGTGCTGTGAGGCGCTCGCGCGTACCGCCCTGGTACG 10 128 0 CTCATAACGAGTCATATCTTCACGTTTGCGCCGTATGCCTA 12 19 1 TTGCGCCGTATGCCTACACGCACCGCGCGGGGCGCATTCTA 12 44 1 GAAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 12 98 1 GATCTGTTCGGTGTCCCTATCACGCCACTGGACCCTCTGTG 12 143 0 * * * * **** ** MAP Score: 11.399 Motif 12 GCGCTCGTCTTCCTCGGAAGACT 0 2 1 GACTGTTTGCGCTCCTCGTCTGTTGTCTGAT 0 79 0 ACGCGAGCTCTCTACGCTTCCTAGCTACACA 2 44 0 GCACGGCAACCCCTCACGTTG 2 166 0 GCGATCTTCCTTTTCCCTAAAAAAGC 6 20 0 TTTGCGGCGTGTTCGCTTTCTGTGCATGGAG 7 91 1 CAACCGCGTGAAGCGGCATCCTGCGTGGTAG 8 38 1 GCCTCCCTGTCTTCCCCTTCCTACCACGCAG 8 58 0 CACTCCTCATGCACCGTGACCGCCTCCCTGT 8 79 0 GATTATCGCACATCCCCCTCCGGGGCGCAAG 8 135 0 CGCTCGCCCTCCCCGGGGGCCG 8 165 0 AACCTACGCACCACCTGTTCCCTTGCGCAAC 9 16 1 GCAATGGTTGCTTTGTTCTCCGCAAATACCG 10 68 1 TGTGCCGCGCGTTGCGCTTCCGGCGTACCAG 10 105 1 GCGTTCCTCCTCATAACGAGTCA 12 2 1 TCTGTGCATACCTCCCTTTCCCACGGCGCGC 12 118 0 GAGGAGATCTGTTCGGTGTCCCTATCACGCC 12 158 0 ******* *** MAP Score: 6.03465 Motif 13 CGCTCGTCTTCCTCGGAAGACTGTGGCAAATAAGCGGCAGTCCATG 0 11 1 CAGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCAGACAACAGACG 0 48 1 GTGATCAGACAACAGACGAGGAGCGCAAACAGTCTCAGAACACTCA 0 76 1 CTTCCGTTTTCTGCCCTGTACTTCCCTTCTTCGTTT 1 0 1 CACAACGTGCGCACCGCACGGCGCGAACGCTTCTCCTC 2 2 0 GTGTAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACCGATTTTCCG 2 45 1 GCGAGGAGTTGACGGAGTGGGTGCGAATATAAATAGTGCTGCCTGT 2 90 1 CCCTCACGTTGTTCAGGAACATGCGGCGAACTACACAAAAAACAGG 2 131 0 TTCTCACTCGGTTGAGTGATCTTCGGGGCTGTGCTTTTAAAGTTCA 3 41 1 GATATCTTTGGGACGTCGGCAAGTGGTAAGCCAACGGTTTTT 7 6 1 AATCCTACCGTCCCAGTTTGCGGCGTGTTCGCTTTCTGTGCATGGA 7 75 1 AAACCTGTCTGTGCAATCAACCGCGTGAAGCGGCATCCTGCGTGGT 8 21 1 GGAAGACAGGGAGGCGGTCACGGTGCATGAGGAGTGTAATTTTCAG 8 74 1 ATCCCCCTCCGGGGCGCAAGCATCCCTGTGAGGCCCTGAAAATTAC 8 109 0 CTTGCGCCCCGGAGGGGGATGTGCGATAATCGGCCCCCGGGGAGGG 8 135 1 GTTGCGCAAGGGAACAGGTGGTGCGTAGGTTTGCGCG 9 1 0 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCCGTTCT 10 1 1 ACCATTGCGGGCACAGGGGCACGCGAACTAGAACGGCCGACGCGGA 10 30 0 TGCTTTGTTCTCCGCAAATACCGCGCGTGTGTGCCGCGCGTTGCGC 10 76 1 TGTGCCGCGCGTTGCGCTTCCGGCGTACCAGGGCGGTACGCGCGAG 10 105 1 TATCTTCACGTTTGCGCCGTATGCCTACACGCACCGCGCGGGGCGC 12 33 1 AGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCAC 12 100 1 AACCAGAGGAGATCTGTTCGGTGTCCCTATCACGCCACTGGACCCT 12 148 0 * * * * *** * * * MAP Score: 6.01757 Motif 14 AGTCCATGTGGGGAAGGGAGTGCGCTGGTGATCAGACA 0 49 1 AGCGTTCGCGCCGTGCGGTGCGCACGTTGTGTAGCTAG 2 17 1 TAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACCGATT 2 48 1 GATATCTTTGGGACGTCGGCAAGTGGTAAGCCAACGG 7 9 1 GCAATCAACCGCGTGAAGCGGCATCCTGCGTGGTAGGA 8 33 1 TGGTAGGAAGGGGAAGACAGGGAGGCGGTCACGGTGCA 8 63 1 GGGCCTCACAGGGATGCTTGCGCCCCGGAGGGGGATGT 8 119 1 AGGGGGATGTGCGATAATCGGCCCCCGGGGAGGGCGAG 8 147 1 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCC 10 4 1 GCAACCATTGCGGGCACAGGGGCACGCGAACTAGAACG 10 41 0 GCTTTGTTCTCCGCAAATACCGCGCGTGTGTGCCGCGC 10 77 1 CGCGTGTGTGCCGCGCGTTGCGCTTCCGGCGTACCAGG 10 99 1 TGCGCTTCCGGCGTACCAGGGCGGTACGCGCGAGCGCC 10 117 1 TACGCGCGAGCGCCTCACAGCACTCAGGATATTAGCCC 10 141 1 CTTCACGTTTGCGCCGTATGCCTACACGCACCGCGCGG 12 36 1 CCTACACGCACCGCGCGGGGCGCATTCTATACATTTCC 12 56 1 *** * ** * * ** MAP Score: 4.8744 Motif 15 CAAATAAGCGGCAGTCCATGTGGGGAAGGGAGTGCGCTG 0 37 1 GAGAAGCGTTCGCGCCGTGCGGTGCGCACGTTGTGTAGC 2 13 1 AGCGTAGAGAGCTCGCGTGAACACCGATTTTCCGCGAGG 2 57 1 ACCGATTTTCCGCGAGGAGTTGACGGAGTGGGTGCGAAT 2 79 1 TCAACCGCGTGAAGCGGCATCCTGCGTGGTAGGAAGGGG 8 37 1 TGCGTGGTAGGAAGGGGAAGACAGGGAGGCGGTCACGGT 8 59 1 CACAGGGATGCTTGCGCCCCGGAGGGGGATGTGCGATAA 8 125 1 GCGATAATCGGCCCCCGGGGAGGGCGAGCG 8 157 1 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCCGTTCT 10 8 1 CGTTCTAGTTCGCGTGCCCCTGTGCCCGCAATGGTTGCT 10 41 1 TTGCTTTGTTCTCCGCAAATACCGCGCGTGTGTGCCGCG 10 75 1 TGGTACGCCGGAAGCGCAACGCGCGGCACACACGCGCGG 10 96 0 TCCGGCGTACCAGGGCGGTACGCGCGAGCGCCTCACAGC 10 123 1 CGCCGTATGCCTACACGCACCGCGCGGGGCGCATTCTAT 12 47 1 TTTGAAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAG 12 95 1 * * ** * *** ** MAP Score: 3.88775 Motif 16 GCAAATAAGCGGCAGTCCATGTGGGGAAGGGAGTGCGCTGGTG 0 36 1 TCCTAGCTACACAACGTGCGCACCGCACGGCGCGAACGCTTCT 2 14 0 TTGTGTAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACCGATT 2 43 1 CCGATTTTCCGCGAGGAGTTGACGGAGTGGGTGCGAATATAAA 2 80 1 GTCCCAGTTTGCGGCGTGTTCGCTTTCTGTGCATGGAGGATTG 7 84 1 TGTGCAATCAACCGCGTGAAGCGGCATCCTGCGTGGTAGGAAG 8 30 1 CTGCGTGGTAGGAAGGGGAAGACAGGGAGGCGGTCACGGTGCA 8 58 1 CTTGCGCCCCGGAGGGGGATGTGCGATAATCGGCCCCCGGGGA 8 135 1 AGCTGGGCCGTGCGCGCATGTCCGCGTCGGCCGT 10 1 1 CATTGCGGGCACAGGGGCACGCGAACTAGAACGGCCGACGCGG 10 31 0 CGCCGGAAGCGCAACGCGCGGCACACACGCGCGGTATTTGCGG 10 87 0 CTGTGAGGCGCTCGCGCGTACCGCCCTGGTACGCCGGAAGCGC 10 118 0 CGCCCCGCGCGGTGCGTGTAGGCATACGGCGCAAACGTGAAGA 12 35 0 CAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCACAG 12 105 1 AGAGGGTCCAGTGGCGTGATAGGGACACCGAACAGATCTCCTC 12 146 1 * *** * * * * * * MAP Score: 3.52087 Motif 17 TGTCTGATCACCAGCGCACTCCCTTCCCCACATGGACTG 0 48 0 GAGGAGAAGCGTTCGCGCCGTGCGGTGCGCACGT 2 5 1 GGAAGCGTAGAGAGCTCGCGTGAACACCGATTTTCCGCG 2 54 1 TGTTTTTTGTGTAGTTCGCCGCATGTTCCTGAACAACGT 2 133 1 TTGTTTTTTGGGTGTGCACTTGTTCAAGTTCAGAGGTGA 5 20 1 TCCTACCGTCCCAGTTTGCGGCGTGTTCGCTTTCTGTGC 7 77 1 TCATAAAAAACCTGTCTGTGCAATCAACCGCGTGAAGCG 8 14 1 CTTCCCCTTCCTACCACGCAGGATGCCGCTTCACGCGGT 8 40 0 CTCCGGGGCGCAAGCATCCCTGTGAGGCCCTGAAAATTA 8 110 0 CGCTCGCCCTCCCCGGGGGCCGATTATCGCA 8 156 0 CTACGCACCACCTGTTCCCTTGCGCAACAAGGAAACAG 9 19 1 CCGACGCGGACATGCGCGCACGGCCCAGCT 10 1 0 GTCGGCCGTTCTAGTTCGCGTGCCCCTGTGCCCGCAATG 10 35 1 CTCCGCAAATACCGCGCGTGTGTGCCGCGCGTTGCGCTT 10 85 1 GCGTACCGCCCTGGTACGCCGGAAGCGCAACGCGCGGCA 10 107 0 AGTGCTGTGAGGCGCTCGCGCGTACCGCCCTGGTACGCC 10 126 0 TAGAATGCGCCCCGCGCGGTGCGTGTAGGCATACGGCGC 12 46 0 TTCGGTGTCCCTATCACGCCACTGGACCCTCTGTGCATA 12 139 0 * ** *** * * ** MAP Score: 3.111 Motif 18 GCGCTCGTCTTCCTCGGAAGACTGTGGCAA 0 2 1 TGGCAAATAAGCGGCAGTCCATGTGGGGAAGGGAGTGC 0 34 1 GTGTTCTGAGACTGTTTGCGCTCCTCGTCTGTTGTCTG 0 81 0 GAGGAGAAGCGTTCGCGCCGTGCGGTGCGCACG 2 5 1 CGTGCGGTGCGCACGTTGTGTAGCTAGGAAGCGTAGAG 2 28 1 TAGCTAGGAAGCGTAGAGAGCTCGCGTGAACACCGATT 2 48 1 GCATGTTCCTGAACAACGTGAGGGGTTGCCGTGC 2 153 1 CGAACACGCCGCAAACTGGGACGGTAGGATTCGAACCT 7 68 0 CGGCGTGTTCGCTTTCTGTGCATGGAGGATTGGATT 7 95 1 GTAGGAAGGGGAAGACAGGGAGGCGGTCACGGTGCATG 8 65 1 CCTCCGGGGCGCAAGCATCCCTGTGAGGCCCTGAAAAT 8 112 0 GCCGATTATCGCACATCCCCCTCCGGGGCGCAAGCATC 8 131 0 GGGGATGTGCGATAATCGGCCCCCGGGGAGGGCGAGCG 8 149 1 GGCCGACGCGGACATGCGCGCACGGCCCAGCT 10 4 0 GTCCGCGTCGGCCGTTCTAGTTCGCGTGCCCCTGTGCC 10 29 1 AACAAAGCAACCATTGCGGGCACAGGGGCACGCGAACT 10 47 0 TTTGTTCTCCGCAAATACCGCGCGTGTGTGCCGCGCGT 10 79 1 CGTGTGTGCCGCGCGTTGCGCTTCCGGCGTACCAGGGC 10 101 1 GCGTACCAGGGCGGTACGCGCGAGCGCCTCACAGCACT 10 127 1 AGAGGCGTATGAAATAGGAGCAGGACGCG 11 15 1 GTGCGTGTAGGCATACGGCGCAAACGTGAAGATATGAC 12 29 0 GTATGCCTACACGCACCGCGCGGGGCGCATTCTATACA 12 51 1 GAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 12 101 1 AGGGAGGTATGCACAGAGGGTCCAGTGGCGTGATAGGG 12 132 1 ** * ** *** ** MAP Score: 1.09185