AlignACE 3.0 10/20/99 AlignACE2 -i TP/TP_operons015_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944239422 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TP0489 300 conserved hypothetical protein #1 TP0492 23 DNA primase (dnaG) #2 TP0708 65 T. pallidum predicted coding region TP0708 #3 TP0709 55 RNA polymerase sigma-28 factor #4 TP1012 204 RNA polymerase sigma-43 factor (sigA) #5 TP1025 300 ribosomal protein L13 (rplM) Motif 1 TCGGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGT 5 44 1 ATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGC 5 168 1 CCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAG 5 129 1 TGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 278 1 TGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGATT 0 252 1 CTCTTGTCACTTTCTTGAGTGCAGGATGTTCTTTTCGT 0 226 1 AAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTC 0 41 1 AAGGACCTGTTTCCAAGCGTGTAGTGTGAGCT 2 4 0 TGTAATCTCGAGGTCTAGGGTTCGAATCC 0 1 1 AAATCAGCTATAACAGTAGAGGGCACGGGA 3 35 1 TTCCCGAGTGGTCAAAGGGAGCAGACTGTAAATCTGTT 0 66 1 AGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAG 4 100 1 GCAAACATGCGTGATCGTGCGCCCACGCGCAAGCTACC 5 245 1 CGTCTTCCGTTTGCTTTTGGGTAGTGTCTGACTTGTCT 0 145 1 AGTCATATCTTCACGTTTGCGCCGTATGCCTACACGCA 4 28 1 TGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAAC 4 141 1 GGAGCTAGTCTGCAGCTGGTTTTTTGTTT 2 46 0 GCGCCCACGCGCAAGCTACCGGAGCGTGTGGATAAAGG 5 263 1 ** * * * ** * ** MAP Score: 29.7263 Motif 2 ATGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAACA 4 140 1 CGCGGTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTT 5 76 1 GTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 277 1 GGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTTTTG 5 46 1 TGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGATTTC 0 252 1 TCCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGG 5 128 1 ATCTCTCCTTGTAGGGGTGGCAAACATGCGTGATCGTGCG 5 226 1 GCCCCGCGCGGTGCGTGTAGGCATACGGCGCAAACGTGAA 4 37 0 GAAATCAGCTATAACAGTAGAGGGCACGGGA 3 34 1 CTGTAAATCTGTTGGCGTTGTCTTCCAAGGTTCGAATCCT 0 91 1 TTTACAGTCTGCTCCCTTTGACCACTCGGGAAACTCCCCA 0 58 0 GTGGGCGCAGGATGCACTGCGGTTCTTGCGTGGTGCTGCG 5 157 1 GAATCCCTAAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGA 0 33 1 CAAACGGAAGACGAAAGTGGGGAGTCAAGGATTCGAACCT 0 118 0 AAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 4 99 1 * * **** * *** MAP Score: 18.817 Motif 3 TGTAATCTCGAGGTCTAGGGTTCGAATCCCTAAGTTGG 0 6 1 GGGAGTTTCCCGAGTGGTCAAAGGGAGCAGACTGTAAATCTG 0 60 1 CTTTCGTCTTCCGTTTGCTTTTGGGTAGTGTCTGACTTGTCT 0 141 1 GACTTGTCTTTCCCTGGCGTTTCGTTCCAGGCGTTTTTGCTA 0 174 1 GCGCGCGGTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 270 1 TCACACTACACGCTTGGAAACAGGTCCTTGACGAAACAAAAA 2 13 1 CCGCGCGGTGCGTGTAGGCATACGGCGCAAACGTGAAGATAT 4 32 0 TCCAGTGGCGTGATAGGGACACCGAACAGATCTCCTCTGGTT 4 152 1 GAACAGATCTCCTCTGGTTTATCGTAAATGGCATGATAT 4 175 1 ATGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGGC 5 35 1 GGCGCGGTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTT 5 74 1 TCTTCTTTCCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGC 5 121 1 GTTGTGGTCTCGGGTGGGCGCAGGATGCACTGCGGTTCTTGC 5 144 1 CTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTATTTTT 5 173 1 CGGTAGCTTGCGCGTGGGCGCACGATCACGCATGTTTGCCAC 5 242 0 GCTACCGGAGCGTGTGGATAAAGGAGCAGAGGG 5 277 1 ** *** ** * * * MAP Score: 18.2967 Motif 4 GAATCCCTAAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGA 0 33 1 TTCGTCTTCCGTTTGCTTTTGGGTAGTGTCTGACTTGTCT 0 143 1 AGGCGTTTTTGCTAGCTGCTGTGCCTCTTGTCACTTTCTT 0 202 1 GCCTCTTGTCACTTTCTTGAGTGCAGGATGTTCTTTTCGT 0 224 1 GCAGGATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAG 0 246 1 GGTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 276 1 CGAGTCATATCTTCACGTTTGCGCCGTATGCCTACACGCA 4 26 1 TATAGAATGCGCCCCGCGCGGTGCGTGTAGGCATACGGCG 4 47 0 GAAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAG 4 98 1 TATGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAAC 4 139 1 TGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGG 5 36 1 CGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGGTGTGCT 5 57 1 GTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCTTCTTTC 5 90 1 TTCCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAG 5 127 1 AGCACCACGCAAGAACCGCAGTGCATCCTGCGCCCACCCG 5 154 0 TGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTATTTT 5 174 1 CACACGCTCCGGTAGCTTGCGCGTGGGCGCACGATCACGC 5 253 0 * * * * **** * * MAP Score: 16.3956 Motif 5 TGTAATCTCGAGGTCTAGGGTTCGAATCCC 0 1 1 GAATCCCTAAGTTGGCTTGTTCGTTTGGGGAGTTTCCCG 0 33 1 GTTTGGGGAGTTTCCCGAGTGGTCAAAGGGAGCAGACTG 0 55 1 AGGATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGG 0 248 1 TGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 278 1 AAATCAGCTATAACAGTAGAGGGCACGGGA 3 35 1 AGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 4 100 1 TGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAACA 4 141 1 TTTATGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTG 5 32 1 TTTTGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGG 5 52 1 GCGGTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTT 5 77 1 CCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGG 5 129 1 GGTCTCGGGTGGGCGCAGGATGCACTGCGGTTCTTGCGT 5 149 1 ATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCG 5 168 1 GCAAACATGCGTGATCGTGCGCCCACGCGCAAGCTACCG 5 245 1 * * ** * ** *** MAP Score: 15.3085 Motif 6 GTATAGAATGCGCCCCGCGCGGTGCGTGTAGGCATACGGCGC 4 46 0 CGCAAGCTACCGGAGCGTGTGGATAAAGGAGCAGAGGG 5 272 1 GGTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCTTCTTTCC 5 89 1 CGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGGTGTGCTGCTG 5 59 1 ATGATTTTTATGAGACGATCGGGAGATTTTGCGCGGGAGGCG 5 26 1 TCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCAC 4 104 1 ATATCTCTCCTTGTAGGGGTGGCAAACATGCGTGATCGTGCG 5 224 1 GCAGGATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGA 0 246 1 CTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTATTTTT 5 173 1 AGCTCACACTACACGCTTGGAAACAGGTCCTTGACGAAAC 2 8 1 CTAAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAA 0 39 1 GACTGTAAATCTGTTGGCGTTGTCTTCCAAGGTTCGAATCCT 0 89 1 AGAGGAGATCTGTTCGGTGTCCCTATCACGCCACTGGACCCT 4 148 0 CGTGAAGATATGACTCGTTATGAGGAGGAACGC 4 1 0 ** ** **** ** MAP Score: 15.211 Motif 7 TGTAATCTCGAGGTCTAGGGTTCGAATCCCTAAGTTGGCTTGTT 0 9 1 AAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAAAGGGA 0 41 1 TTCGTTCCAGGCGTTTTTGCTAGCTGCTGTGCCTCTTGTCACTTT 0 194 1 TGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGATTTCAGTGG 0 252 1 GTAGCGCGCCGTGGGAAAGGGAGGTATGCACAGAGGGTCCAGTGG 4 115 1 AGACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTT 5 38 1 TGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGGTGTGCTGCT 5 55 1 GGTTGGTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCTTCTTTC 5 85 1 GAGTACGGTTGTGGTCTCGGGTGGGCGCAGGATGCACTGCGGTTC 5 137 1 GGATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTAT 5 166 1 TGGCAAACATGCGTGATCGTGCGCCCACGCGCAAGCTACCGGAGC 5 243 1 * * * *** ** * * MAP Score: 12.5381 Motif 8 TGTAATCTCGAGGTCTAGGGTTCGAATCCCTAAGTTGGC 0 9 1 AGGCGTTTTTGCTAGCTGCTGTGCCTCTTGTCACTTTCTT 0 202 1 CTTCCGCACCGCGCGCACGCGCACGAAAAGAACATCCTGC 0 246 0 GGTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 276 1 GAAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAG 4 98 1 TATGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAAC 4 139 1 CGATAAACCAGAGGAGATCTGTTCGGTGTCCCTATCACGC 4 159 0 TGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGG 5 36 1 GTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTTTTCG 5 80 1 GTACTCCATAGGGGAAAGAAGAGCGAAAACCGCCGCTCCC 5 103 0 GAGTACGGTTGTGGTCTCGGGTGGGCGCAGGATGCACTGC 5 137 1 TGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTATTTT 5 174 1 TGGCAAACATGCGTGATCGTGCGCCCACGCGCAAGCTACC 5 243 1 ACCGGAGCGTGTGGATAAAGGAGCAGAGGG 5 280 1 * * ** ***** * MAP Score: 12.4007 Motif 9 AAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAAAGGGA 0 41 1 CCAACAGATTTACAGTCTGCTCCCTTTGACCACTCGGGAAACTCC 0 61 0 TGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGATTTCAGTGG 0 252 1 GCGCGGTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 272 1 AGTCATATCTTCACGTTTGCGCCGTATGCCTACACGCACCGCGCG 4 28 1 AAAGGAAATGTATAGAATGCGCCCCGCGCGGTGCGTGTAGGCATA 4 52 0 AGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCA 4 100 1 CGTGGGAAAGGGAGGTATGCACAGAGGGTCCAGTGGCGTGATAGG 4 124 1 AGACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTT 5 38 1 CGCGGTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTTTTCGC 5 76 1 TTCTTTCCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGG 5 123 1 GTGGGCGCAGGATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGT 5 157 1 GTGGTGCTGCGCCAGTCGGCGGTATTTTTGCTGGTTTTATATCTC 5 186 1 CCGGTAGCTTGCGCGTGGGCGCACGATCACGCATGTTTGCCACCC 5 240 0 * * ***** * * * MAP Score: 11.7314 Motif 10 AAACGGAAGACGAAAGTGGGGAGTCAAGGATTC 0 124 0 CGCACGAAAAGAACATCCTGCACTCAAGAAAGT 0 234 0 ATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGA 0 251 1 ATTTCAGTGGCGGAGGAGGGGAC 0 287 1 TCAGCTATAACAGTAGAGGGCACGGGA 3 38 1 CGGTGCGTGTAGGCATACGGCGCAAACGTGAAG 4 36 0 TGCCTACACGCACCGCGCGGGGCGCATTCTATA 4 54 1 CCGTGGGAAAGGGAGGTATGCACAGAGGGTCCA 4 123 1 GAGACGATCGGGAGATTTTGCGCGGGAGGCGGT 5 37 1 TTGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGG 5 54 1 CTGATGGGAGCGGCGGTTTTCGCTCTTCTTTCC 5 98 1 CGGTTGTGGTCTCGGGTGGGCGCAGGATGCACT 5 142 1 GGTGGGCGCAGGATGCACTGCGGTTCTTGCGTG 5 156 1 GCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGG 5 175 1 GGCAAACATGCGTGATCGTGCGCCCACGCGCAA 5 244 1 CCACACGCTCCGGTAGCTTGCGCGTGGGCGCAC 5 261 0 ** ** ****** MAP Score: 10.7815 Motif 11 CCCGAGTGGTCAAAGGGAGCAGACTGTAAATC 0 68 1 GACTGTAAATCTGTTGGCGTTGTCTTCCAAGG 0 89 1 AAGAAAGTGACAAGAGGCACAGCAGCTAGCAA 0 210 0 CTTGTCACTTTCTTGAGTGCAGGATGTTCTTT 0 228 1 GATGTTCTTTTCGTGCGCGTGCGCGCGGTGCG 0 250 1 CGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 280 1 GGACCTGTTTCCAAGCGTGTAGTGTGAGCT 2 8 0 GCTATAACAGTAGAGGGCACGGGA 3 41 1 GCGCCCCGCGCGGTGCGTGTAGGCATACGGCG 4 47 0 GAGGTATGCACAGAGGGTCCAGTGGCGTGATA 4 135 1 TCGGGAGATTTTGCGCGGGAGGCGGTGGTGGG 5 44 1 CGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGG 5 59 1 GGCGCGGTTTTGGTTGGTGTGCTGCTGATGGG 5 74 1 GGTGTGCTGCTGATGGGAGCGGCGGTTTTCGC 5 89 1 TTGTGGTCTCGGGTGGGCGCAGGATGCACTGC 5 145 1 AAAATACCGCCGACTGGCGCAGCACCACGCAA 5 182 0 GCAAACATGCGTGATCGTGCGCCCACGCGCAA 5 245 1 CGCAAGCTACCGGAGCGTGTGGATAAAGGAGC 5 272 1 * * ******** MAP Score: 8.57735 Motif 12 TGTAATCTCGAGGTCTAGGGTTCGAATCCCTAAG 0 2 1 AGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAAAGG 0 42 1 AGACTGTAAATCTGTTGGCGTTGTCTTCCAAGGTTCGAATCC 0 88 1 TGCAGGATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGG 0 245 1 GTCATATCTTCACGTTTGCGCCGTATGCCTACACGCACCGCG 4 29 1 TCCTTTTGAAGAATCAAGAGAACTGTAGCGCGCCGTGGGAAA 4 91 1 TAGCGCGCCGTGGGAAAGGGAGGTATGCACAGAGGGTCCAGT 4 116 1 ATTTTTATGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTG 5 29 1 GAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTG 5 48 1 GTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCTTCTTTCCC 5 90 1 CCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGGATGC 5 130 1 TGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTAT 5 169 1 CAAACATGCGTGATCGTGCGCCCACGCGCAAGCTACCGGAGC 5 246 1 * * * * * * ** ** MAP Score: 8.48314 Motif 13 CCTAAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGT 0 38 1 GGGAGTTTCCCGAGTGGTCAAAGGGAGCAGACTGTAA 0 60 1 TTTCGTCTTCCGTTTGCTTTTGGGTAGTGTCTGACTT 0 142 1 ATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGA 0 251 1 CGGTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 275 1 ACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCACAGA 4 112 1 ATGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTGG 5 35 1 TTGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGG 5 54 1 TTGGTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCT 5 87 1 ATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGGATG 5 134 1 AGGATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGT 5 165 1 CATGCGTGATCGTGCGCCCACGCGCAAGCTACCGGAG 5 250 1 ** * ** *** ** MAP Score: 8.00268 Motif 14 CAGTCTGCTCCCTTTGACCACTCGGGAAACTCCCC 0 59 0 AAGGTTCGAATCCTTGACTCCCCACTTTCGTCTTC 0 117 1 AGCAAAAACGCCTGGAACGAAACGCCAGGGAAAGA 0 180 0 GAAATCCTTCCGCACCGCGCGCACGCGCACGAAAA 0 257 0 GTCCCCTCCTCCGCCACTGAAATCCTT 0 283 0 ACGTTTGCGCCGTATGCCTACACGCACCGCGCGGG 4 40 1 TGCATACCTCCCTTTCCCACGGCGCGCTACAGTTC 4 110 0 GTTCGGTGTCCCTATCACGCCACTGGACCCTCTGT 4 144 0 CGCAGCTTGACACAGAATGATTTTT 5 0 1 CCGCGCCCACCACCGCCTCCCGCGCAAAATCTCCC 5 46 0 GAGCGAAAACCGCCGCTCCCATCAGCAGCACACCA 5 88 0 CGCAGTGCATCCTGCGCCCACCCGAGACCACAACC 5 143 0 CGCCGACTGGCGCAGCACCACGCAAGAACCGCAGT 5 172 0 CGATCACGCATGTTTGCCACCCCTACAAGGAGAGA 5 227 0 CATGCGTGATCGTGCGCCCACGCGCAAGCTACCGG 5 250 1 CCCTCTGCTCCTTTATCCACACGCTCCGGTAGCT 5 276 0 *** ** * ** * * MAP Score: 6.3488 Motif 15 TCGTGCGCGTGCGCGCGGTGCGGAAGGATTTCAGTGG 0 260 1 AGAATGCGCCCCGCGCGGTGCGTGTAGGCATACGGCG 4 47 0 GAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCA 4 108 1 AAAGGGAGGTATGCACAGAGGGTCCAGTGGCGTGATA 4 130 1 GAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTTTT 5 48 1 TGCTGCTGATGGGAGCGGCGGTTTTCGCTCTTCTTTC 5 93 1 TACGGTTGTGGTCTCGGGTGGGCGCAGGATGCACTGC 5 140 1 CCACGCGCAAGCTACCGGAGCGTGTGGATAAAGGAGC 5 267 1 * * **** *** * MAP Score: 5.89394 Motif 16 CGTTTCGTTCCAGGCGTTTTTGCTAGCTGCTGTGCC 0 191 1 CCTCTTGTCACTTTCTTGAGTGCAGGATGTTCTTTT 0 225 1 ATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGG 0 251 1 GGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 281 1 TCAGCTATAACAGTAGAGGGCACGGGA 3 38 1 ATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGG 4 103 1 ACAGAGGGTCCAGTGGCGTGATAGGGACACCGAACA 4 144 1 ATGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTG 5 35 1 GCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGGT 5 56 1 TGGTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCT 5 88 1 CTTCTTTCCCCTATGGAGTACGGTTGTGGTCTCGGG 5 122 1 CGGTTGTGGTCTCGGGTGGGCGCAGGATGCACTGCG 5 142 1 GGGTGGCAAACATGCGTGATCGTGCGCCCACGCGCA 5 240 1 * ** * * *** ** MAP Score: 5.72632 Motif 17 TTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAAAGGGAGCAGACTG 0 49 1 TGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGATTTCAGTGG 0 252 1 AGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCA 4 100 1 GGAGGTATGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAAC 4 134 1 GGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGG 5 46 1 GGTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTTTTCGCTCT 5 79 1 CGCAGGATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCG 5 162 1 TCCTTGTAGGGGTGGCAAACATGCGTGATCGTGCGCCCACGCGCA 5 231 1 * * * * ** * * ** MAP Score: 4.97252 Motif 18 TGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAAAGGGAG 0 45 1 CTGTAAATCTGTTGGCGTTGTCTTCCAAGGTTCGAATCCTTG 0 91 1 CCAGGCGTTTTTGCTAGCTGCTGTGCCTCTTGTCACTTTCTT 0 200 1 AGGATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGGAAGGATT 0 248 1 CAAACGTGAAGATATGACTCGTTATGAGGAGGAACGC 4 5 0 ATATCTTCACGTTTGCGCCGTATGCCTACACGCACCGCGCGG 4 32 1 AAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCACAG 4 106 1 GGAAAGGGAGGTATGCACAGAGGGTCCAGTGGCGTGATAGGG 4 128 1 ACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGT 5 40 1 CGCGGTTTTGGTTGGTGTGCTGCTGATGGGAGCGGCGGTTTT 5 76 1 GTGGTCTCGGGTGGGCGCAGGATGCACTGCGGTTCTTGCGTG 5 147 1 ACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGGTATTTT 5 172 1 ATCTCTCCTTGTAGGGGTGGCAAACATGCGTGATCGTGCGCC 5 226 1 CAAGCTACCGGAGCGTGTGGATAAAGGAGCAGAGGG 5 274 1 *** * ** * * * * MAP Score: 4.88358 Motif 19 TAAGTTGGCTTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAA 0 40 1 TCGTCTTCCGTTTGCTTTTGGGTAGTGTCTGACTTGTCTTT 0 144 1 TTTCCCTGGCGTTTCGTTCCAGGCGTTTTTGCTAGCTGCTG 0 182 1 GAGTGCAGGATGTTCTTTTCGTGCGCGTGCGCGCGGTGCGG 0 242 1 GCATACCTCCCTTTCCCACGGCGCGCTACAGTTCTCTTGAT 4 103 0 TATGCACAGAGGGTCCAGTGGCGTGATAGGGACACCGAACA 4 139 1 ATCGGGAGATTTTGCGCGGGAGGCGGTGGTGGGCGCGGTTT 5 43 1 GGTGGGCGCGGTTTTGGTTGGTGTGCTGCTGATGGGAGCGG 5 70 1 TATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGGATGCAC 5 133 1 GATGCACTGCGGTTCTTGCGTGGTGCTGCGCCAGTCGGCGG 5 167 1 TCCTTGTAGGGGTGGCAAACATGCGTGATCGTGCGCCCACG 5 231 1 CACACGCTCCGGTAGCTTGCGCGTGGGCGCACGATCACGCA 5 252 0 *** * ** * * * * MAP Score: 4.00405 Motif 20 TTGTTCGTTTGGGGAGTTTCCCGAGTGGTCAAAGGGAGCAGACTGTAA 0 49 1 GTGCGCGTGCGCGCGGTGCGGAAGGATTTCAGTGGCGGAGGAGGGGAC 0 262 1 CTTCACGTTTGCGCCGTATGCCTACACGCACCGCGCGGGGCGCATTCT 4 36 1 AGAATCAAGAGAACTGTAGCGCGCCGTGGGAAAGGGAGGTATGCACAG 4 100 1 TGATTTTTATGAGACGATCGGGAGATTTTGCGCGGGAGGCGGTGGTGG 5 27 1 TGCGCGGGAGGCGGTGGTGGGCGCGGTTTTGGTTGGTGTGCTGCTGAT 5 55 1 CTTCTTTCCCCTATGGAGTACGGTTGTGGTCTCGGGTGGGCGCAGGAT 5 122 1 TCTCGGGTGGGCGCAGGATGCACTGCGGTTCTTGCGTGGTGCTGCGCC 5 151 1 ATCTCTCCTTGTAGGGGTGGCAAACATGCGTGATCGTGCGCCCACGCG 5 226 1 * * * *** * ** * MAP Score: 3.32484 Motif 21 CTGTAAATCTGTTGGCGTTGTCTTCCAAGG 0 91 1 CTTTCCCTGGCGTTTCGTTCCAGGCGTTTT 0 181 1 GCAGGATGTTCTTTTCGTGCGCGTGCGCGC 0 246 1 CTTTTCGTGCGCGTGCGCGCGGTGCGGAAG 0 256 1 ATATCTTCACGTTTGCGCCGTATGCCTACA 4 32 1 GCGCCCCGCGCGGTGCGTGTAGGCATACGG 4 49 0 CAGAGGAGATCTGTTCGGTGTCCCTATCAC 4 161 0 GATCGGGAGATTTTGCGCGGGAGGCGGTGG 5 42 1 CGGGAGGCGGTGGTGGGCGCGGTTTTGGTT 5 59 1 CGGTTTTGGTTGGTGTGCTGCTGATGGGAG 5 78 1 GGGAGCGGCGGTTTTCGCTCTTCTTTCCCC 5 103 1 TATGGAGTACGGTTGTGGTCTCGGGTGGGC 5 133 1 TTGTGGTCTCGGGTGGGCGCAGGATGCACT 5 145 1 GCACTGCGGTTCTTGCGTGGTGCTGCGCCA 5 170 1 GTCGGCGGTATTTTTGCTGGTTTTATATCT 5 200 1 ACATGCGTGATCGTGCGCCCACGCGCAAGC 5 249 1 CGCTCCGGTAGCTTGCGCGTGGGCGCACGA 5 259 0 ********** MAP Score: 0.119367