AlignACE 3.0 10/20/99 AlignACE2 -i TP/TP_operons019_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944239623 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TP0048 21 conserved hypothetical protein #1 TP0049 292 conserved hypothetical protein #2 TP0524 135 ATP-dependent protease LA (lon-2) #3 TP1004 73 recombination protein (recR) #4 TP1005 58 DNA polymerase III, subunits gamma and tau (dnaH) #5 TP1006 108 DNA gyrase, subunit B (gyrB) #6 TP1010 125 nucleoside-diphosphate kinase (ndk) Motif 1 CTTGGCCCCCGCGCTGAGGGAAAAGCGGGAGGACTTTTCCGTGC 1 12 0 ACCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCTGAGGG 1 36 0 GCTCGCTCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTTGGTCC 1 61 1 AGAGCAAGTAGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCG 1 117 1 TGGAACTACGGGACGGTCTGAGCACGAGGACGCGGGCACCCAAC 1 141 0 CGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCATCCGAAGAT 1 215 1 CCTAGTAAACGTCTTGCACGACCTGCGGGGGCGCAGTATACCGC 2 28 1 AGGGCGCCTAGTATCCAGGCAAGGGACGAAAAGTCAATG 2 106 0 GTAGCGACAGACGGGTAGGAAGAGTGCGAAAGCT 3 0 1 AAGGAAGGGTAAAAAGAGAAAGTGTGGGGAGGACTTGCATAAAG 6 35 1 GAGGACTTGCATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCA 6 63 1 ACGCTGGCGCGCCACGTGTATTAGCTAGGACGAGGAAATCAT 6 93 1 * * * ** ** *** MAP Score: 13.9438 Motif 2 CCCAACCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCTG 1 40 0 GGCCAGGGTTGGGGCTCGTGTGCCCTCTTGGTCCTCTTTAAAGA 1 71 1 ACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGCTCAGACCGT 1 129 1 TCGGATGCGTGCCATGCGCAAGACCTCTCCGGGGAAAACGGTAT 1 211 0 GAAGATACAAGCGTATTGAGTACGCGTTCGTTCGTTTTTGTATT 1 253 1 AGACGGGTAGGAAGAGTGCGAAAGCTGTCAGTTCAATATGGGGA 3 18 1 GTATTTCCATGTGAGTGGTGCCGTCTGACAGGGGGAAGGATCA 4 25 1 AAGTCTATAGTGCGCTCGTCTGTGTGAGCAGCAAGA 5 2 1 CATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGTATTA 6 72 1 * * * * * ** * * * MAP Score: 13.6389 Motif 3 TTTTCCCTCAGCGCGGGGGCCAAGCCAGTGCTCGCTCCTGG 1 32 1 TCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTTGGTCCTCT 1 67 1 ACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGCTCAGAC 1 129 1 GTAGTTCCACGGTTTGACAGTATCTAACCGCGGTGATACCG 1 176 1 CCCCGGAGAGGTCTTGCGCATGGCACGCATCCGAAGATACA 1 221 1 AGATACAAGCGTATTGAGTACGCGTTCGTTCGTTTTTGTAT 1 255 1 AAAAGGCCTCGAATGGAGGCATTGACTTTTCGTCCCTTGCC 2 87 1 ATGTTTTGTGCATTTGTATTTCCATGTGAGTGG 4 2 1 AGCAGCAAGAGTATTGCCTTTCTGTGTCTTAAAAAGGTGAA 5 36 1 TTCCTTCACCGTATGGTGAGTCACCCTGTCC 6 0 0 CATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGTA 6 72 1 * *** * * * ** * MAP Score: 11.4404 Motif 4 TTTTCCCTCAGCGCGGGGGCCAAGCCAGTG 1 32 1 TGCACGACCTGCGGGGGCGCAGTATACCGC 2 42 1 AATGGTGGGTACGCTGGCGCGCCACGTGTA 6 83 1 GAGCACGAGGACGCGGGCACCCAACCCAAG 1 136 0 CTCCTGGCCAGGGTTGGGGCTCGTGTGCCC 1 66 1 TCCCCGGAGAGGTCTTGCGCATGGCACGCA 1 220 1 TGAGGGAAAAGCGGGAGGACTTTTCCGTGC 1 12 0 CCCTGGCCAGGAGCGAGCACTGGCTTGGCC 1 49 0 CTGCTCACACAGACGAGCGCACTATAGACT 5 11 0 ********** MAP Score: 9.91085 Motif 5 CCCCCGCGCTGAGGGAAAAGCGGGAGGACTTTTCCGTGC 1 12 0 CCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCTG 1 40 0 CTCGCTCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTTG 1 62 1 GAGCAAGTAGAACCGAAGCTTGGGTTGGGTGCCCGCGTC 1 118 1 CTACGGGACGGTCTGAGCACGAGGACGCGGGCACCCAAC 1 141 0 GTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCATCCGA 1 216 1 TACTCAATACGCTTGTATCTTCGGATGCGTGCCATGCGC 1 236 0 TAAACGTCTTGCACGACCTGCGGGGGCGCAGTATACCGC 2 33 1 TTCGTCCCTTGCCTGGATACTAGGCGCCCT 2 115 1 GTAGCGACAGACGGGTAGGAAGAGTGCGAAAGCT 3 5 1 TAGGTATGCTGATGAAAAGGAGAGCGGTCAGTT 5 85 1 AGGGTAAAAAGAGAAAGTGTGGGGAGGACTTGCATAAAG 6 40 1 CTTGCATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCA 6 68 1 ** ** * *** * * MAP Score: 9.77341 Motif 6 CTGGCTTGGCCCCCGCGCTGAGGGAAAAGCGGGA 1 26 0 GAGCCCCAACCCTGGCCAGGAGCGAGCACTGGCT 1 54 0 TAGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCT 1 125 1 GTGCCCGCGTCCTCGTGCTCAGACCGTCCCGTAG 1 146 1 TAAACGTCTTGCACGACCTGCGGGGGCGCAGTAT 2 33 1 TTTTAAAAGGCCTCGAATGGAGGCATTGACTTTT 2 83 1 CGCCTAGTATCCAGGCAAGGGACGAAAAGTCAAT 2 107 0 GGATTTTGTACCAGGGGATGTGTG 3 59 1 ATTTGTATTTCCATGTGAGTGGTGCCGTCTGACA 4 21 1 ACCCTTCCTTCACCGTATGGTGAGTCACCCTGTC 6 11 0 GGTAAAAAGAGAAAGTGTGGGGAGGACTTGCATA 6 42 1 CTTGCATAAAGAAAGAATGGTGGGTACGCTGGCG 6 68 1 TGGTGGGTACGCTGGCGCGCCACGTGTATTAGCT 6 85 1 *** * **** * * MAP Score: 9.20853 Motif 7 GCTTTTCCCTCAGCGCGGGGGCCAAGCCAGTGCTCG 1 30 1 CTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCT 1 41 0 CGCTCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTT 1 64 1 GTCTGAGCACGAGGACGCGGGCACCCAACCCAAGCT 1 134 0 GTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCATC 1 216 1 GCTTGTATCTTCGGATGCGTGCCATGCGCAAGACCT 1 229 0 CAAGCGTATTGAGTACGCGTTCGTTCGTTTTTGTAT 1 260 1 GTCTTGCACGACCTGCGGGGGCGCAGTATACCGCGC 2 38 1 TTAAAAGGCCTCGAATGGAGGCATTGACTTTTCGTC 2 85 1 TAGGAAGAGTGCGAAAGCTGTCAGTTCAATATGGGG 3 25 1 GTATTTCCATGTGAGTGGTGCCGTCTGACAGGGGGA 4 25 1 GCGCTCGTCTGTGTGAGCAGCAAGAGTATTGCCTTT 5 21 1 TCTTAAAAAGGTGAATGTGGTCATAGGTATGCTGAT 5 62 1 GCTGATGAAAAGGAGAGCGGTCAGTT 5 92 1 AAAAGAGAAAGTGTGGGGAGGACTTGCATAAAGAAA 6 46 1 AAAGAATGGTGGGTACGCTGGCGCGCCACGTGTATT 6 79 1 * * * ****** * MAP Score: 8.83198 Motif 8 ACCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCG 1 43 0 TCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTTGGTC 1 67 1 CGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGCTCAG 1 131 1 ACCGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCA 1 213 1 ATACAAGCGTATTGAGTACGCGTTCGTTCGTTTTTGT 1 257 1 AAGTCTATAGTGCGCTCGTCTGTGTGAGCAG 5 4 1 AAGAGAAAGTGTGGGGAGGACTTGCATAAAGAAAGAA 6 48 1 AAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGTA 6 76 1 * * * ** ** ** * MAP Score: 4.93277 Motif 9 CCCCCGCGCTGAGGGAAAAGCGGGAGGACTTTTCCGTGC 1 12 0 CCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCTG 1 40 0 TTTCTTTAAAGAGGACCAAGAGGGCACACGAGCCCCAAC 1 78 0 CTGTCAAACCGTGGAACTACGGGACGGTCTGAGCACGAG 1 157 0 GTATCTAACCGCGGTGATACCGTTTTCCCCGGAGAGGTC 1 195 1 TAAACGTCTTGCACGACCTGCGGGGGCGCAGTATACCGC 2 33 1 GTATTTCCATGTGAGTGGTGCCGTCTGACAGGGGGAAGG 4 25 1 TCGTCTGTGTGAGCAGCAAGAGTATTGCCTTTCTGTGTC 5 25 1 AGGGTAAAAAGAGAAAGTGTGGGGAGGACTTGCATAAAG 6 40 1 CTTGCATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCA 6 68 1 * * * * ** ** * * MAP Score: 4.33111 Motif 10 CCAAGCCAGTGCTCGCTCCTGGCCAGGGTTGGGGCTCGTGTGCC 1 51 1 CAAGTAGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGCT 1 121 1 ACTGTCAAACCGTGGAACTACGGGACGGTCTGAGCACGAGGACG 1 153 0 GCGGTGATACCGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGC 1 205 1 TCCTAGTAAACGTCTTGCACGACCTGCGGGGGCGCAGTATACCG 2 27 1 ATTGACTTTTCGTCCCTTGCCTGGATACTAGGCGCCCT 2 107 1 GTAGCGACAGACGGGTAGGAAGAGTGCGAAAGCTGTCA 3 4 1 CCTCGTCCTAGCTAATACACGTGGCGCGCCAGCGTACCCACCAT 6 84 0 *** * * * * *** MAP Score: 4.11082 Motif 11 TGAGGGAAAAGCGGGAGGACTTTTCCGTGCTG 1 5 0 CGGGGGCCAAGCCAGTGCTCGCTCCTGGCCAGGGTTG 1 45 1 CAGGGTTGGGGCTCGTGTGCCCTCTTGGTCCTCTTTA 1 74 1 TAGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGT 1 125 1 TACCGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGC 1 212 1 TATTGAGTACGCGTTCGTTCGTTTTTGTATTGACCG 1 266 1 CACGACCTGCGGGGGCGCAGTATACCGCGCAGGTATA 2 44 1 ATTTGTATTTCCATGTGAGTGGTGCCGTCTGACAGGG 4 21 1 AAAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGT 6 75 1 ** * * ** * *** MAP Score: 2.98798 Motif 12 CAGCACGGAAAAGTCCTCCCGCTTTTCCCTCAGCGCGGGGGCCAA 1 7 1 CCCAACCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCTGAGGG 1 36 0 TCTTTAAAGAGGACCAAGAGGGCACACGAGCCCCAACCCTGGCCAGGA 1 67 0 AGAGCAAGTAGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGCT 1 117 1 CGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCATCCGAAGATACAA 1 215 1 AGATACAAGCGTATTGAGTACGCGTTCGTTCGTTTTTGTATTGACCG 1 255 1 TAAACGTCTTGCACGACCTGCGGGGGCGCAGTATACCGCGCAGGTATA 2 33 1 GTAGCGACAGACGGGTAGGAAGAGTGCGAAAGCTGTCA 3 0 1 CTTGCATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGTATTA 6 68 1 * * * *** * * ** MAP Score: 2.35163 Motif 13 CAGCACGGAAAAGTCCTCCCGCTTTTCCCTCA 1 4 1 GGAGCGAGCACTGGCTTGGCCCCCGCGCTGAGGGAAAA 1 32 0 AGTGCTCGCTCCTGGCCAGGGTTGGGGCTCGTGTGCCC 1 58 1 AGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGC 1 126 1 TACCGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCA 1 212 1 TCCGAAGATACAAGCGTATTGAGTACGCGTTCGTTCGT 1 250 1 AAACGTCTTGCACGACCTGCGGGGGCGCAGTATACCGC 2 34 1 GCCTCGAATGGAGGCATTGACTTTTCGTCCCTTGCCTG 2 92 1 CTTTTCGTCCCTTGCCTGGATACTAGGCGCCCT 2 112 1 ATTTGTATTTCCATGTGAGTGGTGCCGTCTGACAGGGG 4 21 1 TTGCATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCA 6 69 1 * ** * * ** *** MAP Score: 1.97893 Motif 14 TTTTCCCTCAGCGCGGGGGCCAAGCCAGTGC 1 32 1 CGGGGGCCAAGCCAGTGCTCGCTCCTGGCCA 1 45 1 CTCGCTCCTGGCCAGGGTTGGGGCTCGTGTG 1 62 1 CAGGGTTGGGGCTCGTGTGCCCTCTTGGTCC 1 74 1 TAGAACCGAAGCTTGGGTTGGGTGCCCGCGT 1 125 1 TGCACGACCTGCGGGGGCGCAGTATACCGCG 2 42 1 TTCGTCCCTTGCCTGGATACTAGGCGCCCT 2 115 1 TGGTGGGTACGCTGGCGCGCCACGTGTATTA 6 85 1 ACGTGTATTAGCTAGGACGAGGAAATCAT 6 106 1 *** ******* MAP Score: 1.68833 Motif 15 CAGCACGGAAAAGTCCTCCCGCTTTTCCCTCAGCGCGGGGG 1 7 1 ACCCTGGCCAGGAGCGAGCACTGGCTTGGCCCCCGCGCTGAGGG 1 36 0 GCTCGCTCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTTGGTCC 1 61 1 ACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTGCTCAGACCGT 1 129 1 CAGTATCTAACCGCGGTGATACCGTTTTCCCCGGAGAGGTCTTG 1 193 1 AGATACAAGCGTATTGAGTACGCGTTCGTTCGTTTTTGTATTGA 1 255 1 CGTCTTGCACGACCTGCGGGGGCGCAGTATACCGCGCAGGTATA 2 37 1 AGTATCCAGGCAAGGGACGAAAAGTCAATGCCTCCATTCGAGGC 2 92 0 AGACGGGTAGGAAGAGTGCGAAAGCTGTCAGTTCAATATGGGGA 3 18 1 AAGTCTATAGTGCGCTCGTCTGTGTGAGCAGCAAGAGT 5 4 1 CATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGTATTA 6 72 1 * * * * *** ** * MAP Score: 1.38601 Motif 16 GGGAAAAGCGGGAGGACTTTTCCGTGCTG 1 3 0 GCACTGGCTTGGCCCCCGCGCTGAGGGAAAAGCGGG 1 27 0 GGGCCAAGCCAGTGCTCGCTCCTGGCCAGGGTTGGG 1 48 1 GCTCCTGGCCAGGGTTGGGGCTCGTGTGCCCTCTTG 1 65 1 AAGAGCAAGTAGAACCGAAGCTTGGGTTGGGTGCCC 1 116 1 GCTTGGGTTGGGTGCCCGCGTCCTCGTGCTCAGACC 1 135 1 TTTTCCCCGGAGAGGTCTTGCGCATGGCACGCATCC 1 217 1 AAGCGTATTGAGTACGCGTTCGTTCGTTTTTGTATT 1 261 1 CGCGGTATACTGCGCCCCCGCAGGTCGTGCAAGACG 2 37 0 AGGGCGCCTAGTATCCAGGCAAGGGACGAAAAGTC 2 110 0 TTTCCATGTGAGTGGTGCCGTCTGACAGGGGGAAGG 4 28 1 AAGTCTATAGTGCGCTCGTCTGTGTGAGCAGCAA 5 8 1 AAGAAAGAATGGTGGGTACGCTGGCGCGCCACGTGT 6 76 1 ** ** * *** * * MAP Score: 1.20313 Motif 17 GTATTCCATCCTGTTGAGACA 0 5 0 CACGGAAAAGTCCTCCCGCTTTTCCCTCAGC 1 13 1 CCCGCTTTTCCCTCAGCGCGGGGGCCAAGCC 1 27 1 GCACACGAGCCCCAACCCTGGCCAGGAGCGA 1 63 0 AAGCTTCGGTTCTACTTGCTCTTTTCTTTAA 1 108 0 GGCACCCAACCCAAGCTTCGGTTCTACTTGC 1 120 0 GGTGCCCGCGTCCTCGTGCTCAGACCGTCCC 1 145 1 CGTGCTCAGACCGTCCCGTAGTTCCACGGTT 1 159 1 TTAGATACTGTCAAACCGTGGAACTACGGGA 1 172 0 TTTGACAGTATCTAACCGCGGTGATACCGTT 1 188 1 ATGCGCAAGACCTCTCCGGGGAAAACGGTAT 1 211 0 AACGTCTTGCACGACCTGCGGGGGCGCAGTA 2 35 1 CATTGACTTTTCGTCCCTTGCCTGGATACTA 2 106 1 TCGCACTCTTCCTACCCGTCTGTCGCTAC 3 8 0 CACACATCCCCTGGTACAAAATCC 3 59 0 TGATCCTTCCCCCTGTCAGACGGCA 4 43 0 AAGGCAATACTCTTGCTGCTCACACAGACGA 5 25 0 GTATGGTGAGTCACCCTGTCC 6 0 0 TAGCTAATACACGTGGCGCGCCAGCGTACCC 6 89 0 ** ******** MAP Score: 1.13518 Motif 18 CGCGCTGAGGGAAAAGCGGGAGGACTTTTCCGTGCTG 1 9 0 TTTTCCCTCAGCGCGGGGGCCAAGCCAGTGCTCGCTCC 1 32 1 TTTAAAGAGGACCAAGAGGGCACACGAGCCCCAACCCT 1 75 0 TAGAACCGAAGCTTGGGTTGGGTGCCCGCGTCCTCGTG 1 125 1 TCAAACCGTGGAACTACGGGACGGTCTGAGCACGAGGA 1 155 0 CGTCTTGCACGACCTGCGGGGGCGCAGTATACCGCGCA 2 37 1 TTTTTAAAAGGCCTCGAATGGAGGCATTGACTTTTCGT 2 82 1 AGGGCGCCTAGTATCCAGGCAAGGGACGAAAAG 2 112 0 GTAGCGACAGACGGGTAGGAAGAGTGCGAAAGC 3 5 1 TAGGTATGCTGATGAAAAGGAGAGCGGTCAGTT 5 85 1 GTAAAAAGAGAAAGTGTGGGGAGGACTTGCATAAAGAA 6 43 1 CATAAAGAAAGAATGGTGGGTACGCTGGCGCGCCACGT 6 72 1 ACGCTGGCGCGCCACGTGTATTAGCTAGGACGAGGAAA 6 93 1 ** * *** * ** * MAP Score: 0.515563