AlignACE 3.0 10/20/99
AlignACE2 -i TP/TP_operons031_300.orf 
Parameter values:
 expect =      	10
 gcback =      	0.38
 minpass =     	200
 seed =        	944240066
 numcols =     	10
 undersample = 	1
 oversample = 	1

Input sequences:
#0	TP0726	57	flagellar protein (flbD)
#1	TP0727	70	flagellar hook protein (flgE)
#2	TP0728	75	flagellar hook assembly scaffolding protein (flgD)

Motif 1
CATCACGCCACCTGCCGCTTAAGATACATTT	0	26	0
CCTAATCTCTCTTTCTCTGTTCACAAACCAT	1	17	0
TGCTCTGTGTCCTCCTCATGTGACTCATTTT	1	48	0
GCCGGTTTTGCCTACCCTGTAGGGGGGTCAG	2	18	1
  GCCCCGGCCCTCCTCTTTTTTCACCGGTT	2	56	0
          *** *******
MAP Score: 2.84913