AlignACE 3.0 10/20/99 AlignACE2 -i TP/TP_profile010_100.orf Parameter values: expect = 10 gcback = 0.38 minpass = 200 seed = 944240697 numcols = 10 undersample = 1 oversample = 1 Input sequences: #0 TP0345 152 phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) #1 TP0519 300 response regulatory protein (atoC) #2 TP0547 143 penicillin tolerance protein (lytB) #3 TP0841 300 periplasmic serine protease DO (htrA-2) #4 TP0933 135 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (murE) Motif 1 GCGTGTAAGTGTACGTGGCGGGCACAGGTGAA 3 66 1 GTACGCGCAGGGACGTGGAGGGACTCATGAAC 3 167 1 AAGTGTGCGCGGTGTGCTGATAGTAC 3 4 1 GGTCATGCAAGGGCGCGGCGTGGTGGTGAGTT 2 59 0 TGTGCTGATAGTACATGCAGGGAGCAGTTTGT 3 22 1 GGAGCAGTTTGTGCACGGTAGGCAGCGTGTAA 3 42 1 CAGCAGGAGAGGGCAAGGGAGGAGAACAGGAA 0 111 1 CTCTACTGTTGGACGGGGTACGTGTTTTACTC 1 186 1 TGTTCCCCGAGGGCGTGCAATCAGATACAATC 4 104 1 AGGCTCCTGGGTACGAGCGTGCATTTCTTGAG 0 10 1 AAAACTGAAGGTACGGGGTTAGGGTTAACCTT 1 109 1 TACCTCGTTTGTGTGTGGGGTACATGCGGTAT 3 207 1 GGAAGAAAACTGGCGCGCCGAGTGTACCAAAG 2 98 0 ***** ** *** MAP Score: 17.62 Motif 2 TGTCGGTAGGGGTTTGGGTACGCGCAGGGACGTGGA 3 150 1 CTCTACTGTTGGACGGGGTACGTGTTTTACTCTCCT 1 186 1 GGATGCAGCAGGAGAGGGCAAGGGAGGAGAACAGGA 0 106 1 CCTCGTTTGTGTGTGGGGTACATGCGGTATGCCGCA 3 209 1 GTAAGTGTACGTGGCGGGCACAGGTGAAGAGGGGAT 3 70 1 AGGCTCCTGGGTACGAGCGTGCATTTCTT 0 3 1 TTGACACACGGCCGAGTGTAACGGAGCACTGTGCCT 0 48 1 TGCACGGTAGGCAGCGTGTAAGTGTACGTGGCGGGC 3 53 1 AGCACACAGCGATATGGTTACGAGTTTATCCCCTCT 3 97 0 TTTTCTTCCGGTTTAGTGCCCCAGTGAGTGAT 2 121 1 AAAACTGAAGGTACGGGGTTAGGGTTAACCTTAACG 1 109 1 GAGGAGAACAGGAAGGAGCACCGGTAGTAGTTG 0 129 1 GCCCTTGCATGACCTGGGTGCCTTTGGTACACTCGG 2 77 1 GCGGCGGAGTGTAAGTTAATCACTAAAAG 4 3 1 TACCGACACAGCCCGGGTTAAAAGCAGCACACAGCG 3 122 0 TCCCAATTTATCTATGGGTAAAAGGAGAGTAAAACA 1 208 0 * ******* * * MAP Score: 17.3533 Motif 3 TGCATTTCTTGAGCGCGTGTTGACACACGGCCGAGTGTAA 0 29 1 GTGCTAGTCCCTGAGCGAGAAGGATGCAGCAGGAGAGGGC 0 85 1 CAGCAGGAGAGGGCAAGGGAGGAGAACAGGAAGGAGCACC 0 111 1 AAGGTGATTAAAGAACATGGCGGTGACATCAGTGTGTCCT 1 148 1 CTGTTGGACGGGGTACGTGTTTTACTCTCCTTTTACCCAT 1 191 1 CAGGTCATGCAAGGGCGCGGCGTGGTGGTGAGTTCTTCTT 2 53 0 GGCGCGCCGAGTGTACCAAAGGCACCCAGGTCATGCAAGG 2 79 0 GGTACACTCGGCGCGCCAGTTTTCTTCCGGTTTAGTGCCC 2 102 1 AAGTGTGCGCGGTGTGCTGATAGTACATGCAG 3 2 1 GCTGCCTACCGTGCACAAACTGCTCCCTGCATGTACTATC 3 28 0 CAGCGTGTAAGTGTACGTGGCGGGCACAGGTGAAGAGGGG 3 64 1 ACAGCGATATGGTTACGAGTTTATCCCCTCTTCACCTGTG 3 88 0 ACACAGCCCGGGTTAAAAGCAGCACACAGCGATATGGTTA 3 113 0 GTAGGGGTTTGGGTACGCGCAGGGACGTGGAGGGACTCAT 3 155 1 GGAGGGACTCATGAACATATTGTTTACCTCGTTTGTGTGT 3 183 1 TTTGTGTGTGGGGTACATGCGGTATGCCGCAGTTTTTTTA 3 214 1 * * *** * * * ** MAP Score: 16.6373 Motif 4 CTCCGTTACACTCGGCCGTGTGTCAACACGCG 0 42 0 CCGAGTGTAACGGAGCACTGTGCCTTGTGCTA 0 59 1 TGATACTGATGTGGTCAGTTTGTTTATG 1 6 0 ACATGGCGGTGACATCAGTGTGTCCTCTACTG 1 162 1 GGTCATGCAAGGGCGCGGCGTGGTGGTGAGTT 2 59 0 AAGAAAACTGGCGCGCCGAGTGTACCAAAGGC 2 96 0 AAGTGTGCGCGGTGTGCTGATAGTAC 3 4 1 AGTACATGCAGGGAGCAGTTTGTGCACGGTAG 3 31 1 TTTGTGCACGGTAGGCAGCGTGTAAGTGTACG 3 49 1 CTCGTAACCATATCGCTGTGTGCTGCTTTTAA 3 109 1 TGCTTTTAACCCGGGCTGTGTCGGTAGGGGTT 3 132 1 TATTGTTTACCTCGTTTGTGTGTGGGGTACAT 3 200 1 GATGGCCTTTCCCCACCGTTTGCGATCTTCTT 4 50 1 CGCGGGTCTGATTGTATCTGATTG 4 121 0 * **** ***** MAP Score: 16.4253 Motif 5 GAAGGATGCAGCAGGAGAGGGCAAGGGAGGAGAACAG 0 103 1 GAGGGCAAGGGAGGAGAACAGGAAGGAGCACCGGTAG 0 119 1 TACTAAAACTGAAGGTACGGGGTTAGGGTTAACCTTA 1 105 1 GTCCTCTACTGTTGGACGGGGTACGTGTTTTACTCTC 1 183 1 GTCATGCAAGGGCGCGGCGTGGTGGTGAGTTCTTCTT 2 53 0 AAGTGTGCGCGGTGTGCTGATAGTACATGCAGGGA 3 8 1 GATAGTACATGCAGGGAGCAGTTTGTGCACGGTAGGC 3 28 1 TTGTGCACGGTAGGCAGCGTGTAAGTGTACGTGGCGG 3 50 1 CGTGTAAGTGTACGTGGCGGGCACAGGTGAAGAGGGG 3 67 1 TAACCATATCGCTGTGTGCTGCTTTTAACCCGGGCTG 3 113 1 CCCGGGCTGTGTCGGTAGGGGTTTGGGTACGCGCAGG 3 141 1 TTGGGTACGCGCAGGGACGTGGAGGGACTCATGAACA 3 163 1 TTACCTCGTTTGTGTGTGGGGTACATGCGGTATGCCG 3 206 1 GCGGCGGAGTGTAAGTTAATCACTAAA 4 0 1 * * * ** * * *** MAP Score: 13.1754 Motif 6 GCTCAGGGACTAGCACAAGGCACAGTGCTCCGTTA 0 66 0 AAGGATGCAGCAGGAGAGGGCAAGGGAGGAGAACA 0 104 1 AAGGGAGGAGAACAGGAAGGAGCACCGGTAGTAGT 0 125 1 ATTTCGGATACAGGAGAGGGAATTGATGCCCGAAA 1 40 1 AAGGTGATTAAAGAACATGGCGGTGACATCAGTGT 1 148 1 CCCCGTCCAACAGTAGAGGACACACTGATGTCACC 1 169 0 CATACGAGTAAAGAATAAGGAAATGCG 1 283 1 AAGAAGAACTCACCACCACGCCGCGCCCTTGCATG 2 53 1 ACCGGAAGAAAACTGGCGCGCCGAGTGTACCAAAG 2 98 0 CATGTACTATCAGCACACCGCGCACACTT 3 4 0 GTGTAAGTGTACGTGGCGGGCACAGGTGAAGAGGG 3 68 1 ATAAACTCGTAACCATATCGCTGTGTGCTGCTTTT 3 104 1 CCAAACCCCTACCGACACAGCCCGGGTTAAAAGCA 3 132 0 GGGTTTGGGTACGCGCAGGGACGTGGAGGGACTCA 3 159 1 GCAGATAAAAACGAGCAACGCCGCTGCTGTAAAAA 3 248 0 GTAAGTTAATCACTAAAAGGCTGTCAACGAGATGG 4 20 1 AAAGGCTGTCAACGAGATGGCCTTTCCCCACCGTT 4 35 1 TGCTTTTTCAAAGAAGATCGCAAACGGTGGGGAAA 4 57 0 *** *** *** * MAP Score: 11.4505 Motif 7 AGGCTCCTGGGTACGAGCGTGCATTTCTT 0 1 1 TGAGCGAGAAGGATGCAGCAGGAGAGGGCAAGGGAGGA 0 96 1 GAGAGGGCAAGGGAGGAGAACAGGAAGGAGCACCGGTA 0 117 1 TGATACTGATGTGGTCAGTTTGTTTATG 1 0 0 TCAGTATTTCGGATACAGGAGAGGGAATTGATGCCCGA 1 35 1 ATGCAAGGGCGCGGCGTGGTGGTGAGTTCTTCTTCTTT 2 49 0 TGTACCAAAGGCACCCAGGTCATGCAAGGGCGCGGCGT 2 70 0 GAAAACTGGCGCGCCGAGTGTACCAAAGGCACCCAGGT 2 88 0 AGTGTGCGCGGTGTGCTGATAGTACATGCAGGGAGCAG 3 11 1 AGTACATGCAGGGAGCAGTTTGTGCACGGTAGGCAGCG 3 31 1 TTTGTGCACGGTAGGCAGCGTGTAAGTGTACGTGGCGG 3 49 1 TGTACGTGGCGGGCACAGGTGAAGAGGGGATAAACTCG 3 75 1 CTTTTAACCCGGGCTGTGTCGGTAGGGGTTTGGGTACG 3 134 1 GTTTGGGTACGCGCAGGGACGTGGAGGGACTCATGAAC 3 161 1 CCTCGTTTGTGTGTGGGGTACATGCGGTATGCCGCAGT 3 209 1 AAAGAAGATCGCAAACGGTGGGGAAAGGCCATCTCGTT 4 45 0 *** *** * * * * MAP Score: 10.469 Motif 8 TGGGTGCCTTTGGTACACTCGGCGCGCCAGTTTT 2 91 1 AAGTGTGCGCGGTGTGCTGATAGTAC 3 2 1 GGTGTGCTGATAGTACATGCAGGGAGCAGTTTGT 3 20 1 AGGGAGCAGTTTGTGCACGGTAGGCAGCGTGTAA 3 40 1 CAGCGTGTAAGTGTACGTGGCGGGCACAGGTGAA 3 64 1 GTAGGGGTTTGGGTACGCGCAGGGACGTGGAGGG 3 155 1 TTTGTGTGTGGGGTACATGCGGTATGCCGCAGTT 3 214 1 TGACAATAGATTGTTCCCCGAGGGCGTGCAATCA 4 93 1 * ** * *** *** MAP Score: 8.70856 Motif 9 CAGTGCTCCGTTACACTCGGCCGTGTGTCA 0 49 0 CCCTAACCCCGTACCTTCAGTTTTAGTAGT 1 103 0 GGTGCCTTTGGTACACTCGGCGCGCCAGTT 2 93 1 AAGTGTGCGCGGTGTGCTGATA 3 2 1 TGTGCTGATAGTACATGCAGGGAGCAGTTT 3 22 1 AGGGAGCAGTTTGTGCACGGTAGGCAGCGT 3 40 1 CCACGTACACTTACACGCTGCCTACCGTGC 3 54 0 CAGCGTGTAAGTGTACGTGGCGGGCACAGG 3 64 1 AGGGGTTTGGGTACGCGCAGGGACGTGGAG 3 157 1 TTTACCTCGTTTGTGTGTGGGGTACATGCG 3 205 1 TGTGTGTGGGGTACATGCGGTATGCCGCAG 3 216 1 CCCCGAGGGCGTGCAATCAGATACAATCAG 4 108 1 ********** MAP Score: 8.45167 Motif 10 CGTGCATTTCTTGAGCGCGTGTTGACACACGGCC 0 27 1 TGAGCGAGAAGGATGCAGCAGGAGAGGGCAAGGG 0 96 1 CAGCAGGAGAGGGCAAGGGAGGAGAACAGGAAGG 0 111 1 GAGAACAGGAAGGAGCACCGGTAGTAGTTG 0 132 1 TTTCGGATACAGGAGAGGGAATTGATGCCCGAAA 1 41 1 CTAAAACTGAAGGTACGGGGTTAGGGTTAACCTT 1 107 1 TCCTCTACTGTTGGACGGGGTACGTGTTTTACTC 1 184 1 GGTCATGCAAGGGCGCGGCGTGGTGGTGAGTTCT 2 57 0 TGGGTGCCTTTGGTACACTCGGCGCGCCAGTTTT 2 91 1 AAGTGTGCGCGGTGTGCTGATAGTAC 3 2 1 AGTACATGCAGGGAGCAGTTTGTGCACGGTAGGC 3 31 1 CAGCGTGTAAGTGTACGTGGCGGGCACAGGTGAA 3 64 1 GTAGGGGTTTGGGTACGCGCAGGGACGTGGAGGG 3 155 1 *** ***** * * MAP Score: 6.70125 Motif 11 CTGGGTACGAGCGTGCATTTCTTGAGCGCGTGTTGACACA 0 16 1 ACATCAGTGTGTCCTCTACTGTTGGACGGGGTACGTGTTT 1 173 1 TGCATGACCTGGGTGCCTTTGGTACACTCGGCGCGCCAGT 2 82 1 GGTACACTCGGCGCGCCAGTTTTCTTCCGGTTTAGTGCCC 2 102 1 AGTACATGCAGGGAGCAGTTTGTGCACGGTAGGCAGCGTG 3 31 1 CCATATCGCTGTGTGCTGCTTTTAACCCGGGCTGTGTCGG 3 116 1 ACATGCGGTATGCCGCAGTTTTTTTACAGCAGCGGCGTTG 3 228 1 ACAGCAGCGGCGTTGCTCGTTTTTATCTGCTGCTCTGGTC 3 253 1 * * ** * ** * ** MAP Score: 5.08305 Motif 12 AGGCTCCTGGGTACGAGCGTGCATTT 0 6 1 CGTGCATTTCTTGAGCGCGTGTTGACACAC 0 27 1 TAACGGAGCACTGTGCCTTGTGCTAGTCCC 0 66 1 TCCTCTACTGTTGGACGGGGTACGTGTTTT 1 184 1 CATGCAAGGGCGCGGCGTGGTGGTGAGTTC 2 58 0 CTTGCATGACCTGGGTGCCTTTGGTACACT 2 80 1 CTTTGGTACACTCGGCGCGCCAGTTTTCTT 2 98 1 AAGTGTGCGCGGTGTGCTGATA 3 2 1 AGGGAGCAGTTTGTGCACGGTAGGCAGCGT 3 40 1 CCCTCTTCACCTGTGCCCGCCACGTACACT 3 73 0 AACCATATCGCTGTGTGCTGCTTTTAACCC 3 114 1 TTAACCCGGGCTGTGTCGGTAGGGGTTTGG 3 137 1 CGGTAGGGGTTTGGGTACGCGCAGGGACGT 3 153 1 TTTACCTCGTTTGTGTGTGGGGTACATGCG 3 205 1 GTCATCCAAGTTCTGCGCGT 3 290 1 ********** MAP Score: 4.37024 Motif 13 AGGCTCCTGGGTACGAGCGTGCATTT 0 5 1 GTGTAACGGAGCACTGTGCCTTGTGCTAGTC 0 63 1 TGTGCTAGTCCCTGAGCGAGAAGGATGCAGC 0 84 1 GGCGGTGACATCAGTGTGTCCTCTACTGTTG 1 166 1 CTACTGTTGGACGGGGTACGTGTTTTACTCT 1 188 1 GAACTCACCACCACGCCGCGCCCTTGCATGA 2 58 1 CCTTGCATGACCTGGGTGCCTTTGGTACACT 2 79 1 CCTTTGGTACACTCGGCGCGCCAGTTTTCTT 2 97 1 CGGTTTAGTGCCCCAGTGAGTGAT 2 129 1 AAGTGTGCGCGGTGTGCTGATAGTACA 3 6 1 ACGTACACTTACACGCTGCCTACCGTGCACA 3 51 0 CTTCACCTGTGCCCGCCACGTACACTTACAC 3 68 0 CGTAACCATATCGCTGTGTGCTGCTTTTAAC 3 111 1 TGCTTTTAACCCGGGCTGTGTCGGTAGGGGT 3 132 1 TAGATTGTTCCCCGAGGGCGTGCAATCAGAT 4 99 1 ** ******** MAP Score: 3.71173 Motif 14 TTCTCCTCCCTTGCCCTCTCCTGCTGCATC 0 107 0 TCGGGCATCAATTCCCTCTCCTGTATCCGA 1 43 0 CGCTCAAGAAATGCACGCTCGTACCCAGGA 0 14 0 GTAAAACACGTACCCCGTCCAACAGTAGAG 1 186 0 TTGTATCTGATTGCACGCCCTCGGGGAACA 4 104 0 TTACGAGTTTATCCCCTCTTCACCTGTGCC 3 86 0 CTCCTTCCTGTTCTCCTCCCTTGCCCTCTC 0 117 0 CGCGTACCCAAACCCCTACCGACACAGCCC 3 144 0 GGTTAACCCTAACCCCGTACCTTCAGTTTT 1 109 0 TGTCAACGAGATGGCCTTTCCCCACCGTTT 4 41 1 TCATGAGTCCCTCCACGTCCCTGCGCGTAC 3 167 0 ********** MAP Score: 0.425736 Motif 15 ACAAGGCACAGTGCTCCGTTACACTCGGCCGTGTGTCAA 0 48 0 TACACTCGGCGCGCCAGTTTTCTTCCGGTTTAGTGCCCC 2 104 1 GTACATGCAGGGAGCAGTTTGTGCACGGTAGGCAGCGTG 3 32 1 CTACCGACACAGCCCGGGTTAAAAGCAGCACACAGCGAT 3 120 0 GGCTGTGTCGGTAGGGGTTTGGGTACGCGCAGGGACGTG 3 145 1 CATGCGGTATGCCGCAGTTTTTTTACAGCAGCGGCGTTG 3 229 1 CAGCAGCGGCGTTGCTCGTTTTTATCTGCTGCTCTGGTC 3 254 1 CTGTCAACGAGATGGCCTTTCCCCACCGTTTGCGATCTT 4 40 1 * ** **** * ** MAP Score: 0.228742