*********** *Regulon 1 * *********** CT/CT_sum_all004_100.ace 3 CT259 6 CT259 yhfO CT684 3 yfhO_1 CT684 CT686 CT775 2 aas pbpB 3 pbpB CT683 pgm 1 tyrP_2 tyrP_1 yfhO_2 CT720 recA 2 cmk recJ tdh recA rs2 2 rs2 tsf pyrH rrf frr yaeL 1 yaeL yaeS 2 yaeS cdsA cmk ytgA 3 yaeL yaeM CT/CT_sum_all004_300.ace 3 CT259 4 CT259 yhfO CT646 2 recA CT684 2 yfhO_1 CT684 CT686 CT775 3 aas pbpB 4 pbpB CT683 pgm 1 tyrP_2 tyrP_1 yfhO_2 CT720 recA 2 cmk recJ tdh recA rs2 2 rs2 tsf pyrH rrf frr yaeS 1 yaeS cdsA cmk ytgA 2 yaeL yaeM CT/CT_sum_all004_300.ace 2 CT259 3 CT259 yhfO CT646 3 recA CT684 2 yfhO_1 CT684 CT686 CT775 2 aas pbpB 5 pbpB CT683 pgm 1 tyrP_2 tyrP_1 yfhO_2 CT720 recA 4 cmk recJ tdh recA rs2 1 rs2 tsf pyrH rrf frr yaeL 1 yaeL *********** *Regulon 2 * *********** CT/CT_operons001_300.ace 6 CT065 1 lepA CT460 1 truA infA 3 rpoA rpsK rpsM rplQ infA rpsD dmsB2 mutL 1 pyrF ndk gspD gspE gspF pepP rl3 1 rl17 rpoA rs11 rs13 secY rs5 rl5 rl14 rl6 rs3 rs19 rl2 rl16 rl4 rl3 rs17 rs8 rl22 rl18 rl15 rl24 rl23 rl36 2 rs14 rs1 1 rs1 infB nusA ribF truB rbfA rs12 1 rs7 rs12 fusA rs10 rs13 1 rl17 rpoA rs11 rs13 rs15 1 pnp rs15 rs7 1 rs7 fusA rs10 tufA 1 rl7 rl1 rl11 nusG tufA rl10 yaeI 1 truA CT/CT_sum_all001_300.ace 7 CT065 2 lepA CT460 1 truA CT853 1 map adk 3 adk infA 2 rpoA rpsK rpsM rplQ infA rpsD dmsB2 mutL 2 pyrF ndk gspD gspE gspF pepP rl3 1 rl17 rpoA rs11 rs13 secY rs5 rl5 rl14 rl6 rs3 rs19 rl2 rl16 rl4 rl3 rs17 rs8 rl22 rl18 rl15 rl24 rl23 rl36 2 rs14 rs1 1 rs1 infB nusA ribF truB rbfA rs12 1 rs7 rs12 fusA rs10 rs15 3 pnp rs15 rs4 2 rs4 *********** *Regulon 3 * *********** CT/CT_operons005_300.ace 7 CT343 1 pdhA/B CT230 1 CT230 CT330 2 dxs CT552 3 lpdA CT556 1 lpdA brnQ 1 brnQ lpdA fmu 1 lpdA lpdA 1 aq_737 lpdA pdhA 2 pdhA pdhB pdhC ribC 4 galF ycaH sucB_2 gltT sucA 3 sucA sucB_1 sucB_2 1 sucB_2 tktB 1 tktB tpiS 2 xseA dxs CT/CT_sum_all006_100.ace 7 rs21 1 pdhA/B CT230 3 CT230 CT330 1 dxs dnaX_2 lpdA 2 aq_737 lpdA pdhA 1 pdhA pdhB pdhC ribC 3 galF ycaH sucB_2 gltT yjfH sucA 3 sucA sucB_1 sucB_2 1 sucB_2 tpiS 2 xseA dxs dnaX_2 *********** *Regulon 4 * *********** CT/CT_operons021_100.ace 3 CT398 2 CT398 CT793 1 dnaG fliA 2 yedO yecS fliY fliA rl13 3 rs9 rl13 rpoD 2 himA rpsA folP rpoD CT/CT_sum_all021_100.ace 1 CT398 2 CT398 CT793 1 dnaG fliA 2 yedO yecS fliY fliA rl13 6 rs9 rl13 rpoD 3 himA rpsA folP rpoD rs9 1 rs9 *********** *Regulon 5 * *********** CT/CT_profile003_100.ace 2 CT165 2 trpR amn 1 amn mrsA 4 dut ptsN_1 ptsN_2 mrsA glmS tyrP_1 rl28 2 rl28 rl33 5 rs9 rl13 CPn0249 rl33 trpR 1 trpR tyrP_1 1 tyrP_2 tyrP_1 CT/CT_profile003_100.ace 3 CT165 1 trpR CT168 1 trpR amn 3 amn mrsA 4 dut ptsN_1 ptsN_2 mrsA glmS tyrP_1 rl28 2 rl28 rl33 6 rs9 rl13 CPn0249 rl33 *********** *Regulon 6 * *********** CT/CT_sum_all011_100.ace 1 CT165 1 trpR CT168 1 trpR CT214 3 CT211 mrsA 3 dut ptsN_1 ptsN_2 mrsA glmS tyrP_1 tyrP_2 pssA 1 ybfP pssA yigN CT825 ribC 2 galF ycaH sucB_2 gltT yjfH rl28 2 rl28 rl33 5 rs9 rl13 CPn0249 rl33 trpR 1 trpR CT/CT_sum_all011_300.ace 2 CT165 1 trpR mrsA 2 dut ptsN_1 ptsN_2 mrsA glmS tyrP_1 tyrP_2 pssA 1 ybfP pssA yigN CT825 ribC 2 galF ycaH sucB_2 gltT yjfH rl33 5 rs9 rl13 CPn0249 rl33 yscU 5 yscU lcrD rl28 malQ *********** *Regulon 7 * *********** CT/CT_operons003_100.ace 5 CT191 2 gyrA_1 gyrB_1 tdk CT251 2 dnaA_1 CT251 CT256 1 CT256 CT257 CT355 2 kgsA CT426 2 ubiE CT472 2 CT473 dnaN 2 recF dnaN thdF 1 thdF nth yaeS 2 yaeS argS cmk ycfH 1 ycfH *********** *Regulon 8 * *********** CT/CT_operons013_300.ace 3 CT043 1 glgX CT865 3 glgB glgA 4 glgA glgB malM ldhA aq_729 glgC 5 glgC glgP 2 mpg glgA glgB glgP malM ldhA aq_729 mrsA 2 dut ptsN_1 ptsN_2 mrsA glmS sycE 1 rl28 malQ yscU 3 yscU lcrD rl28 malQ *********** *Regulon 9 * *********** CT/CT_sum_all027_100.ace 1 CT645 3 yohI gltX 3 gltX pcnB_1 6 yphC pcnB_1 rsbV_2 2 miaA *********** *Regulon 10 * *********** CT/CT_operons011_300.ace 1 CT142 3 CT145 CT145 1 CT145 CT259 4 CT259 CT355 2 def CT538 2 fmt CT552 3 lpdA fmu CT663 1 pkn5 atpE 1 valS atpA atpB atpD atpI atpK pknD atpK 1 valS atpK pknD def 2 def fmu 2 lpdA fmu lpxC 1 rl17 rpoA rs11 rs13 secY rs5 rl5 rl14 rl6 rs3 rs19 rl2 rl16 rl4 rs8 rs17 rl3 rl18 rl15 rl24 rl22 rl23 lpxA fabZ fmt yciA 1 yciA rl17 rpoA rs11 rs13 secY rs5 rl5 rl14 rl6 rs3 rs19 rl2 rl16 rl4 rs8 rs17 rl3 rl18 rl15 rl24 rl22 rl23 lpxA fabZ fmt *********** *Regulon 11 * *********** CT/CT_operons023_100.ace 3 CT460 2 truA yg6P cysS 3 cysS pgsA_2 3 pgsA_2 ribC 3 galF ycaH sucB_2 gltT yjfH yaeI 1 truA yg6P ygbB 2 ygbB *********** *Regulon 12 * *********** CT/CT_operons012_300.ace 3 CT079 2 folD CT382.1 3 hflX aroG 1 hflX artJ 1 hflX folD 1 folD rl21 2 rl27 rl21 yhbZ rsbV_2 1 miaA trxA 3 trxA ychF 4 ychF yhbZ 1 yhbZ *********** *Regulon 13 * *********** CT/CT_operons001_100.ace 4 CT460 2 truA adk 3 adk infA 1 rpoA rpsK rpsM rplQ infA rpsD dmsB2 tufA nusG rl11 rl1 rl7 rpoB rpoC rl10 lepA 2 lepA mutL 3 purA aidB pepP nusA 2 mtr nusA rbfA truB ribF infB rpoB 1 rpoB rpoC rs1 1 rs1 rbfA truB ribF nusA infB rs12 4 rs10 fusA rs7 rs12 rs15 2 pnp rs15 rs4 4 rs4 *********** *Regulon 14 * *********** CT/CT_sum_all003_300.ace 13 CT191 1 gyrA_1 gyrB_1 tdk CT251 1 dnaA_1 CT251 CT273 1 dnaA_2 CT330 1 dnaX_2 CT472 1 CT473 dnaA_2 1 dnaA_2 dnaX_2 1 dnaX_2 gapA 1 ndk gyrB_2 1 gyrB_2 gyrA_2 mgtE 1 gyrA_1 gyrB_1 tdk ndk 2 ndk rl3 1 rl17 rpoA rs11 rs13 secY rs5 rl5 rl14 rl6 rs3 rs19 rl2 rl16 rl4 rl3 rs17 rs8 rl22 rl18 rl15 rl24 rl23 ndk tgt 1 gyrA_1 gyrB_1 tdk thdF 1 thdF nth tpiS 1 dnaX_2 yaeS 3 yaeS argS cmk *********** *Regulon 15 * *********** CT/CT_operons004_300.ace 2 mraY 2 murC/ddlA mraY murD murG ftsW murF 5 murF murC/ddlA mraY murD murG ftsW CT700 1 secA_2 efp_2 1 efp_2 murE 4 murE pbpB 5 pbpB psdD 2 secA_2 yabC 1 pbp3 yabC *********** *Regulon 16 * *********** CT/CT_sum_all001_300.ace 2 CT065 2 lepA CT853 1 map CT854 1 map adk 1 adk lepA 1 lepA mutL 3 purA aidB pepP rpoB 1 rpoB rpoC rs1 1 rs1 rbfA truB ribF nusA infB rs12 4 rs10 fusA rs7 rs12 rs15 2 pnp rs15 rs4 4 rs4 *********** *Regulon 17 * *********** CT/CT_sum_all003_100.ace 10 CT191 2 gyrA_1 gyrB_1 tdk CT251 2 dnaA_1 CT251 CT355 1 def kgsA CT472 3 CT473 dnaA_2 1 dnaA_2 dnaN 1 dnaN recF gyrB_2 1 gyrB_2 gyrA_2 CPn0720 ndk 2 ndk thdF 2 yidY tnaB thdF rho yaeS 4 yaeS cdsA cmk *********** *Regulon 18 * *********** CT/CT_sum_all027_300.ace 5 CT406 3 pcnB_1 CT409 2 pcnB_1 CT645 4 yohI euo 3 gltX gltX 2 gltX rsbV_2 1 miaA