*********** *Regulon 1 * *********** CY/CY_operons080_100.ace 1 transposase 13 transposase CY/CY_operons080_100.ace 2 transposase 14 transposase CY/CY_operons080_100.ace 3 transposase 17 transposase CY/CY_operons080_300.ace 5 transposase 8 transposase CY/CY_sum_all106_100.ace 2 transposase 13 transposase CY/CY_sum_all106_300.ace 1 transposase 12 transposase CY/CY_sum_all106_300.ace 2 transposase 13 transposase *********** *Regulon 2 * *********** CY/CY_operons002_300.ace 1 sensory 1 sensory nitrate/nitrite regulatory mtfB UDPglucose 1 UDPglucose hypothetical agp 1 agp dapF 1 degT epsB 1 epsB ftsH 1 leuC ftsH hypothetical glgA 2 glgA glgB malM ldhA aq_729 dTDP-6-deoxy-L-mannose-dehydrogenase hypothetical 9 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP regulatory 2 cheA sensory regulatory mcpA pilJ hypothetical mannose-1-phosphate mtfB rfbD 1 rfbD hypothetical CY/CY_sum_all002_300.ace 1 sensory 1 sensory nitrate/nitrite regulatory mtfB hypothetical UDPglucose 1 UDPglucose hypothetical agp 1 agp dapF 1 degT epsB 1 epsB ftsH 1 leuC ftsH hypothetical glgA 2 glgA glgB malM ldhA aq_729 dTDP-6-deoxy-L-mannose-dehydrogenase hypothetical 9 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS regulatory 2 cheA sensory regulatory mcpA pilJ hypothetical mannose-1-phosphate mtfB rfbD 1 rfbD hypothetical CY/CY_operons008_300.ace 1 sensory 1 sensory nitrate/nitrite regulatory mtfB hypothetical cbbA 1 hypothetical cefD 2 cefD glycogen 2 cdsA hypothetical 8 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS nifS 1 nifS hypothetical pyrH 1 pyrH rrf frr rps2 1 tsf rps2 CY/CY_sum_all010_300.ace 1 sensory 1 sensory nitrate/nitrite regulatory mtfB hypothetical cbbA 1 hypothetical cefD 2 cefD glycogen 2 cdsA hypothetical 8 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS nifS 1 nifS hypothetical pyrH 1 pyrH rrf frr rps2 1 tsf rps2 CY/CY_sum_all001_100.ace 11 narL_sensory 1 narL sensory nitrate/nitrite regulatory mtfB hypothetical sensory 1 sensory nitrate/nitrite regulatory mtfB hypothetical PatA 3 regulatory PatA mcpA hypothetical PleD 2 PleD hypothetical 3 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS pleD 1 pleD regulatory 4 cheA sensory regulatory mcpA pilJ hypothetical mannose-1-phosphate mtfB thl 1 thl transcriptional 1 transcriptional CY/CY_sum_all001_300.ace 12 narL_sensory 1 narL sensory nitrate/nitrite regulatory mtfB hypothetical sensory 1 sensory nitrate/nitrite regulatory mtfB hypothetical PatA 3 regulatory PatA mcpA hypothetical PleD 2 PleD des6 2 hypothetical fraH 1 pleD ftsY 1 sensory hypothetical 11 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS hypothetical_hypothetical 1 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS kdtB 2 cheA ppc 2 regulatory regulatory 3 cheA sensory regulatory mcpA pilJ hypothetical mannose-1-phosphate mtfB thl 1 thl transcriptional 2 transcriptional CY/CY_sum_all001_300.ace 1 sensory 2 sensory nitrate/nitrite regulatory mtfB hypothetical accD 2 purF argT hisQ hisJ hisM accD dut ptsN_1 ptsN_2 sensory chromosome 1 sensory ftsY 1 sensory glnA 1 glnA sensory hypothetical 10 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD galE rfbG rfbB yefA mannose-1-phosphate dTDP-6-deoxy-L-mannose-dehydrogenase rfbC rfbF UDPglucose spsA dpm1 rfbE spsC degT icsA rfbU ABC rfbJ glucosyltransferase rfbP frr pyrH nifS phy 1 phy hypothetical pleD 1 pleD psaC 1 ompR regulatory 3 cheA sensory regulatory mcpA pilJ hypothetical mannose-1-phosphate mtfB rehydrin 1 LumQ htrA thl 1 thl *********** *Regulon 3 * *********** CY/CY_operons080_300.ace 1 hypothetical 1 transposase transposase 12 transposase CY/CY_operons080_300.ace 2 hypothetical 1 transposase transposase 12 transposase CY/CY_sum_all106_100.ace 3 hypothetical 1 transposase transposase 15 transposase *********** *Regulon 4 * *********** CY/CY_operons001_100.ace 12 narL_sensory 1 narL sensory nitrate/nitrite regulatory sensory 2 sensory nitrate/nitrite regulatory PatA 3 regulatory PatA mcpA hypothetical PleD 2 PleD cheY 1 cheA cheY hypothetical 6 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD lim 1 phoP regulatory 4 cheA sensory regulatory mcpA pilJ hypothetical short-chain 1 LumQ transcriptional 1 transcriptional CY/CY_operons001_300.ace 8 sensory 2 sensory nitrate/nitrite regulatory PatA 3 regulatory PatA mcpA hypothetical PleD 2 PleD hypothetical 12 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD hypothetical_hypothetical 1 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD lim 1 phoP livH 1 LumQ htrA ppc 2 regulatory protein 1 protein regulatory 4 cheA sensory regulatory mcpA pilJ hypothetical transcriptional 1 transcriptional CY/CY_operons001_300.ace 10 narL_sensory 1 narL sensory nitrate/nitrite regulatory sensory 2 sensory nitrate/nitrite regulatory PatA 3 regulatory PatA mcpA hypothetical PleD 2 PleD chemotaxis 1 cheY chemotaxis des6 2 hypothetical ftsY 2 sensory hypothetical 12 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD hypothetical_hypothetical 1 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD kdtB 2 cheA pleD 1 pleD ppc 2 regulatory regulatory 4 cheA sensory regulatory mcpA pilJ hypothetical thl 1 thl transcriptional 2 transcriptional *********** *Regulon 5 * *********** CY/CY_operons001_300.ace 1 sensory 2 sensory nitrate/nitrite regulatory accD 2 purF argT hisQ hisJ hisM accD dut ptsN_1 ptsN_2 sensory chromosome 1 sensory ftsY 1 sensory glnA 1 glnA sensory hypothetical 10 sensory LumQ ycf27 cheA phoP copR regulatory patA hypothetical mcpA pilJ thl htrA hhoB pleD PleD phy 1 phy hypothetical pleD 1 pleD psaC 1 ompR regulatory 3 cheA sensory regulatory mcpA pilJ hypothetical rehydrin 1 LumQ htrA thl 1 thl *********** *Regulon 6 * *********** CY/CY_sum_all106_100.ace 1 transposase 12 sensory UDPglucose spsA hypothetical spsC transposase