*********** *Regulon 1 * *********** HY/HY_operons004_300.ace 1 dnaA 1 dnaA dnaN 1 recF dnaN gyrB dniR 1 jhp1479 fliN 1 pepQ yscC lepB folD 1 folD lepB jhp0303 1 argS jhp0449 1 dnaN gyrB jhp0462 1 era jhp0599 5 rnc jhp0600 2 rnc jhp0639 2 gyrA jhp1383 2 serS tmk jhp1384 1 serS tmk jhp1481 2 jhp1481 jhp1479 ksgA 2 ksgA ppiA 1 jhp1343 rpmH thdF rplI 1 era rpmH 1 jhp1343 rpmH thdF HY/HY_operons004_100.ace 1 dnaA 1 dnaA dnaN 1 recF dnaN gyrB dniR 1 jhp1479 folD 1 folD lepB jhp0303 1 argS jhp0462 1 era jhp0599 3 rnc jhp0600 2 rnc jhp0639 2 gyrA jhp0773 1 jhp0773 jhp0774 jhp1383 2 serS tmk jhp1481 2 jhp1481 jhp1479 ksgA 3 ksgA ppiA 1 jhp1343 rpmH thdF rplI 1 era rpmH 1 jhp1343 rpmH thdF *********** *Regulon 2 * *********** HY/HY_operons035_100.ace 6 jhp0342 6 msbA jhp0547 1 bioF jhp0547 jhp0582 1 jhp0582 jhp0715 2 amiA jhp0823 1 fecE jhp1129 2 jhp1129 msbA 1 ycaH msbA pyrH 1 pyrH rrf frr amiA HY/HY_sum_all037_100.ace 3 jhp0342 3 msbA jhp0547 2 bioF jhp0547 jhp0715 1 amiA jhp0823 2 fecE jhp1129 2 jhp1129 msbA 1 ycaH msbA pyrH 1 pyrH rrf frr amiA *********** *Regulon 3 * *********** HY/HY_sum_all011_100.ace 7 jhp0046 4 jhp0045 jhp0245_jhp0246 1 jhp0244 jhp0248 jhp0246 jhp0247 jhp0628 2 jhp0629 jhp0673 2 gpt jhp1271 1 jhp1271 jhp1284 1 jhp1285 jhp1284 res_1 1 mod_1 res_1 *********** *Regulon 4 * *********** HY/HY_operons017_100.ace 5 bioA 3 ytcP bioA bioB 2 ytcP bioB icfA 1 kdsA jhp0026 2 bioD jhp0290 3 hemL jhp0546 1 bioF jhp0547 3 bioF jhp0599 3 aroC jhp1175 1 aroE pheS 2 pgsA2 aroA recA 2 cmk recJ tdh recA aroK *********** *Regulon 5 * *********** HY/HY_operons009_300.ace 7 carB 1 carB guaC 1 guaC jhp0772 2 guaB jhp0854 2 carB jhp0973 1 guaA jhp0974 1 guaA jhp0977 2 guaA jhp1155 3 carA jhp1205 2 trpC trpG trpA trpB trpE trpD pyrB 2 pyrB trpE 4 trpE trpD trpC trpG trpA trpB *********** *Regulon 6 * *********** HY/HY_operons030_300.ace 3 atpD 1 valS atpD atpI atpK pknD jhp1054 exbD_1 atpX 1 jhp1054 exbD_1 exbB_2 3 exbB_2 exbD_2 tonB_2 fmt 1 rl17 rpoA rs11 rs13 secY rs5 rl5 rl14 rl6 rs3 rs19 rl2 rl16 rl4 rs8 rs17 rl3 rl18 rl15 rl24 rl22 rl23 fmt jhp1054 exbD_1 jhp1054 2 jhp1054 jhp1071 3 jhp1054 exbD_1 ppiA 1 argD pabA exbB_3 exbD_3 *********** *Regulon 7 * *********** HY/HY_operons021_100.ace 4 deaD 5 mtr deaD folE_2 1 ispA folE_2 jhp0237 1 xseA jhp0324 2 dxs jhp0999 2 jhp0999 jhp1323 1 jhp1323 ksgA 3 ksgA gcaD jhp1323 napA 2 ispB recR 3 recR htpX ispA folE_1 folE_2 *********** *Regulon 8 * *********** HY/HY_sum_all001_100.ace 2 cheV_2 1 adk jhp0324 5 dxs lepA jhp0368 2 infB jhp0379 jhp0429 3 jhp0432 nrdB 3 truA nusA 2 mtr nusA rbfA truB ribF infB nusG 1 nusG rplA rplK rpoB rpoC rplJ rplL rl11 rl1 rl7 rl10 rpsG rpsL fusA rplA 1 rplA rpoB rpoC rplJ rplL rpsG rpsL fusA rplJ 1 rpoB rpoC rplJ rplL rpsG rpsL fusA rplL 1 rpoB rpoC rplL rpsG rpsL fusA rpsJ 1 rplB rpsS rpsC rplC rplD rplP rpsQ rplV rpsJ rplW map rplE rplN rpsE rplF rpsH secY rplQ rpoA rpsK rpsM rplO rplX rplR rpsN infA rpsD rpsL 1 rpsG rpsL fusA selA 2 nusA tufA 3 tufA nusG rl11 rl1 rl7 rpoB rpoC rl10 rpmG *********** *Regulon 9 * *********** HY/HY_operons039_100.ace 6 jhp0879 5 jhp0879 jhp0996 2 priA jhp1043 2 uvrB jhp1448 1 mfd pcrA 3 mfd recG 1 recG uvrA 1 uvrA dnaX_2 uvrB 1 uvrB *********** *Regulon 10 * *********** HY/HY_sum_all044_300.ace 5 htrA 1 LumQ htrA jhp0402 jhp0402 2 jhp0402 jhp0406 4 jhp0402 jhp0772 2 guaB atpB jhp0770 jhp0842 2 jhp0844 jhp0847 jhp1365 1 polA jhp1383 4 polA jhp1384 3 polA lig 2 lig pcrA 3 mfd pcrA polA 1 rho polA ppk 1 jhp0402 pyrD 1 jhp0402 *********** *Regulon 11 * *********** HY/HY_sum_all002_300.ace 6 aroD 1 b1695 jhp0390 flhF atpB 1 valS atpB atpD atpI atpK pknD cdh 2 flgE flgB 1 fliF flgB flgC fliE cheA flgG_1 1 flgG_1 flgG_2 1 flgG_2 flgI 2 ispB proS flgI flhA_rpsO 1 minD1 flhA flhF cheA rpsD fliA mtr phpA rpsO jhp0390 fliN 1 pepQ fliN pkn5 fliP 1 fliP cheA ilvC 2 ilvC minD jhp0160 1 fliR jhp0193 1 jhp0193 jhp0324 2 dxs lepA fliF fliG jhp0699 1 ftsY jhp0749 1 motA motB jhp0772 1 guaB atpB jhp0842 1 jhp0844 jhp0843 1 jhp0844 jhp1071 1 jhp1054 exbD_1 atpD atpG atpA atpC jhp1067 jhp1066 kgtP 1 kgtP flgG_1 rho 3 rho ribC 1 galF ycaH sucB_2 gltT yjfH flhB_2 rpsP 1 rplS trmD rpsP valS 2 maf valS pknD rplS trmD rpsP ffh ydiE 2 ydiE *********** *Regulon 12 * *********** HY/HY_sum_all017_300.ace 5 apt 1 jhp0516 pepA fliN 3 pepQ fliN pkn5 jhp0516 pepA folD rpi folD 1 jhp0516 pepA folD rpi jhp1257 4 jhp1256 jhp1385 1 rplY pth nadE 3 regulatory hypothetical nadE rplU 1 yhbE rplU rpmA *********** *Regulon 13 * *********** HY/HY_profile008_100.ace 2 dld 2 jhp1142 folE_2 2 ispA folE_2 napA 3 ispB proS ndk 2 ndk pyrG 4 zwf pyrG tpi 1 ndk *********** *Regulon 14 * *********** HY/HY_operons024_100.ace 4 dnaJ_1 4 jhp0398 jhp0365 1 queA jhp0656 3 dnaX jhp0816 1 ruvA panB 1 panB ruvB queA recR 3 recR htpX ispA folE_1 folE_2 ruvC 2 ndk ruvC *********** *Regulon 15 * *********** HY/HY_sum_all025_100.ace 6 fliN 1 pepQ fliN pkn5 jhp0516 pepA folD rpi lepB folD 2 jhp0516 pepA folD rpi lepB gltX_1 2 gltX_1 gltX_2 1 gltX_2 jhp0303 1 argS jhp0305 1 argS jhp0462 1 era jhp0599 3 aroC rnc ksgA 4 ksgA gcaD jhp1323