Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.102497
Description:paxillin
Best-Of-UniGene (BOU) SequenceNM_002859
Genomic Coordiantes Displayed:Bases 1644000 to 1686000 of contig Hs12_9932_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.102497.jpeg
Best sense EST/protein match:AL134282 matched ref|XP_045802.1| (XM_045802) paxillin [Homo sapiens] (E = e-107)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BF125023 cDNA clone IMAGE:4025377 melanotic melanoma 5' read Protein similarity
  BE391399 cDNA clone IMAGE:3606013 endometrium, adenocarcinoma cell line 5' read Protein similarityPolyadenylation signal
  AV704689 cDNA clone ADBCAF05 adrenal gland 5' read Protein similarity
  BI712990 cDNA clone (no-name) purified pancreatic islet 5' read Protein similarity
  AV706385 cDNA clone ADBCTA02 adrenal gland 5' read Protein similarityPolyadenylation signal
  AV707514 cDNA clone ADBBVD05 adrenal gland 5' read Protein similarity
  BE730287 cDNA clone IMAGE:3832976 melanotic melanoma 5' read Protein similarity
  BG333647 cDNA clone IMAGE:4577313 melanotic melanoma 5' read Protein similarity
  BE277433 cDNA clone IMAGE:3547129 melanotic melanoma 5' read Protein similarity
  BE390078 cDNA clone IMAGE:3607127 endometrium, adenocarcinoma cell line 5' read Protein similarity
  AA305167 cDNA clone ATCC:128857 5' read
  BE385665 cDNA clone IMAGE:3616567 melanotic melanoma 5' read Protein similarity
  BG334314 cDNA clone IMAGE:4578583 melanotic melanoma 5' read Protein similarity
  BE388531 cDNA clone IMAGE:3603720 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BE389961 cDNA clone IMAGE:3607514 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BG421314 cDNA clone IMAGE:4590174 renal cell adenocarcinoma 5' read Protein similarity
  AA001216 cDNA clone IMAGE:427742 pool 5' read 0.7 kb
  AA702469 cDNA clone IMAGE:448104 pool 3' read Protein similarityPolyadenylation signal
  BI791580 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarityPolyadenylation signal
  AA088370 cDNA clone IMAGE:511105 5' read Polyadenylation signal
  AA158835 cDNA clone IMAGE:591099 5' read Polyadenylation signal
  BG764156 cDNA clone IMAGE:4862180 melanotic melanoma, high mdr (cell line) 5' read
  AI248974 cDNA clone IMAGE:1850307 pool 3' read 0.7 kbProtein similarityPolyadenylation signal
  AA002185 cDNA clone IMAGE:427729 pool 3' read 0.6 kbProtein similarityPolyadenylation signal
  BG758909 cDNA clone IMAGE:4853452 primary b-cells from tonsils (cell line) 5' read

SENSE ESTs

  AI858634 cDNA clone IMAGE:2427425 uterus 3' read 0.8 kbPolyadenylation signal
  BI258892 cDNA clone IMAGE:5109917 choriocarcinoma 5' read
  BE907319 cDNA clone IMAGE:3901879 epithelioid carcinoma 5' read
  BF340647 cDNA clone IMAGE:4185263 glioblastoma with egfr amplification 5' read Polyadenylation signal
  BG779341 cDNA clone IMAGE:4805750 adenocarcinoma 5' read
  AW152599 cDNA clone IMAGE:2624027 stomach 3' read Polyadenylation signal
  AI077893 cDNA clone IMAGE:1665872 3' read 1.2 kbPolyadenylation signal
  AI952781 cDNA clone IMAGE:2491132 uterus 3' read 0.6 kbPolyadenylation signal
  AI301356 cDNA clone IMAGE:1899515 kidney 3' read 0.5 kbPolyadenylation signal
  AA812380 cDNA clone IMAGE:1174693 prostate 3' read 1.6 kbPolyadenylation signal
  BE536926 cDNA clone IMAGE:3451019 placenta 5' read
  AI452577 cDNA clone IMAGE:2142246 stomach 3' read 1.4 kbPolyadenylation signal
  AI085189 cDNA clone IMAGE:1665966 3' read 1.0 kbPolyadenylation signal
  BE962079 cDNA clone IMAGE:3845939 adenocarcinoma 3' read Polyadenylation signal
  AW873766 cDNA clone IMAGE:3120818 neuroblastoma 3' read Polyadenylation signal
  T32707 cDNA clone ATCC:103347 heart 3' read Polyadenylation signal
  AA946624 cDNA clone IMAGE:1588633 kidney 3' read 0.7 kbPolyadenylation signal
  AA622694 cDNA clone IMAGE:1118381 lung 3' read 1.2 kbPolyadenylation signal
  AI281548 cDNA clone IMAGE:1968414 lymph 3' read 2.0 kbPolyadenylation signal
  BE903887 cDNA clone IMAGE:3896878 epithelioid carcinoma 5' read
  AA583133 cDNA clone IMAGE:1086454 germ cell 3' read 1.7 kbPolyadenylation signal
  BE220775 cDNA clone IMAGE:3170417 malignant melanoma, metastatic to lymph node 3' read Polyadenylation signal
  BE049310 cDNA clone IMAGE:2836195 pancreas 3' read Polyadenylation signal
  AI520731 cDNA clone IMAGE:2129717 pancreas 3' read 0.9 kbPolyadenylation signal
  AI282919 cDNA clone IMAGE:1960518 esophagus 3' read 0.8 kbPolyadenylation signal
  AA094510 cDNA clone (no-name) heart 5' read
  AI453781 cDNA clone IMAGE:2142385 stomach 3' read 0.5 kbPolyadenylation signal
  W85933 cDNA clone IMAGE:416153 pool 3' read 0.8 kb
  AA057736 cDNA clone IMAGE:510574 3' read 1.1 kbPolyadenylation signal
  BE677418 cDNA clone IMAGE:3279626 dorsal root ganglia 3' read Polyadenylation signal
  AI623972 cDNA clone IMAGE:2229592 pancreas 3' read 0.6 kbPolyadenylation signal
  AI568029 cDNA clone IMAGE:2226167 pancreas 3' read 3.6 kbPolyadenylation signal
  AW029543 cDNA clone IMAGE:2543520 stomach 3' read 0.6 kbPolyadenylation signal
  AW152547 cDNA clone IMAGE:2623959 stomach 3' read Polyadenylation signal
  AI432528 cDNA clone IMAGE:2120556 pancreas 3' read 1.0 kbPolyadenylation signal
  BE906566 cDNA clone IMAGE:3904090 epithelioid carcinoma 5' read
  AW302589 cDNA clone IMAGE:2827259 three pooled meningiomas 3' read Polyadenylation signal
  BE541852 cDNA clone IMAGE:3450608 placenta 5' read
  AI719227 cDNA clone IMAGE:2318649 aorta 3' read
  AW276466 cDNA clone IMAGE:2760061 two pooled squamous cell carcinomas 3' read Polyadenylation signal
  AI744239 cDNA clone IMAGE:2217671 ovary 3' read Polyadenylation signal
  AW117978 cDNA clone IMAGE:2612249 uterus 3' read Polyadenylation signal
  AA578640 cDNA clone IMAGE:980060 lung 3' read 1.4 kbPolyadenylation signal
  AA582786 cDNA clone IMAGE:1085854 germ cell 3' read 1.0 kbPolyadenylation signal
  AA633004 cDNA clone IMAGE:1143357 lung 3' read Polyadenylation signal
  AI039975 cDNA clone IMAGE:1663417 3' read 0.8 kb
  AW662420 cDNA clone IMAGE:2973457 colon 3' read Polyadenylation signal
  AI953973 cDNA clone IMAGE:2549740 normal epithelium 3' read 0.6 kbPolyadenylation signal
  AI815236 cDNA clone IMAGE:2420982 pancreas 3' read 0.9 kbPolyadenylation signal
  AL121333 cDNA clone DKFZp762P246 melanoma (mewo cell line) 5' read
  AI953815 cDNA clone IMAGE:2548956 three pooled meningiomas 3' read 0.8 kbPolyadenylation signal
  AU153713 cDNA clone NT2RP3003813 3' read Polyadenylation signal
  BF347546 cDNA clone IMAGE:4156031 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BF347540 cDNA clone IMAGE:4156029 anaplastic oligodendroglioma with 1p/19q loss 5' read Polyadenylation signal
  BF347615 cDNA clone IMAGE:4156030 anaplastic oligodendroglioma with 1p/19q loss 5' read Polyadenylation signal
  BF347389 cDNA clone IMAGE:4156053 anaplastic oligodendroglioma with 1p/19q loss 5' read
  F31229 cDNA clone s4000111B02 muscle
  BE302037 cDNA clone IMAGE:3048682 placenta 3' read Polyadenylation signal
  AI709025 cDNA clone IMAGE:2332367 colon 3' read Polyadenylation signal
  AW675449 cDNA clone IMAGE:2899918 placenta 3' read Polyadenylation signal
  BG236365 cDNA clone IMAGE:4142436 lymphocyte 3' read Polyadenylation signal
  AW249649 cDNA clone IMAGE:2819784 small cell carcinoma 3' read Polyadenylation signal
  BE744292 cDNA clone IMAGE:3837216 adenocarcinoma cell line 5' read
  BF129289 cDNA clone IMAGE:4054076 primary b-cells from tonsils (cell line) 3' read Protein similarity
  BG286904 cDNA clone IMAGE:4500358 transitional cell papilloma, cell line 5' read
  BG288915 cDNA clone IMAGE:4512975 transitional cell papilloma, cell line 5' read
  BG289093 cDNA clone IMAGE:4512928 transitional cell papilloma, cell line 5' read
  AA336170 cDNA clone ATCC:137933 testis 5' read
  BE336928 cDNA clone IMAGE:3030712 adenocarcinoma cell line 5' read
  AA302293 cDNA clone ATCC:114460 aorta 5' read
  BG254841 cDNA clone IMAGE:4477338 adenocarcinoma, cell line 5' read
  BI086484 cDNA clone IMAGE:4991389 placenta 5' read
  BG029908 cDNA clone IMAGE:4391484 mammary adenocarcinoma, cell line 5' read
  BF128630 cDNA clone IMAGE:4054076 primary b-cells from tonsils (cell line) 5' read
  BG610867 cDNA clone IMAGE:4737871 adenocarcinoma 5' read
  BF662835 cDNA clone IMAGE:4308360 primary b-cells from tonsils (cell line) 5' read
  BF664499 cDNA clone IMAGE:4309884 primary b-cells from tonsils (cell line) 5' read
  BE877082 cDNA clone IMAGE:3887207 large cell carcinoma, undifferentiated 5' read
  BF663480 cDNA clone IMAGE:4297738 primary b-cells from tonsils (cell line) 5' read
  BE018429 cDNA clone IMAGE:3048682 placenta 5' read
  AA367110 cDNA clone ATCC:171789 pancreas 5' read
  BI870406 cDNA clone IMAGE:5405797 adenocarcinoma, cell line 5' read
  AA057735 cDNA clone IMAGE:510574 5' read 1.1 kb
  BE727989 cDNA clone IMAGE:3830295 melanotic melanoma 5' read
  BE389642 cDNA clone IMAGE:3605148 endometrium, adenocarcinoma cell line 5' read
  BE727779 cDNA clone IMAGE:3833428 melanotic melanoma 5' read
  BG767426 cDNA clone IMAGE:4871260 melanotic melanoma, high mdr (cell line) 5' read
  BM010380 cDNA clone IMAGE:5444710 amelanotic melanoma, cell line 5' read
  BI160565 cDNA clone IMAGE:5018604 epithelioid carcinoma cell line 5' read
  BG830887 cDNA clone IMAGE:4909594 epithelioid carcinoma cell line 5' read
  BG829916 cDNA clone IMAGE:4899605 epithelioid carcinoma cell line 5' read
  AA359580 cDNA clone ATCC:163694 lung 5' read
  BG681238 cDNA clone IMAGE:4753892 squamous cell carcinoma 5' read
  BG681152 cDNA clone IMAGE:4753604 squamous cell carcinoma 5' read
  BG611696 cDNA clone IMAGE:4738548 adenocarcinoma 5' read
  AA319537 cDNA clone ATCC:120108 adrenal gland 5' read
  BE882593 cDNA clone IMAGE:3908818 leiomyosarcoma 5' read
  AA347152 cDNA clone ATCC:103347 heart 5' read
  W85932 cDNA clone IMAGE:416153 pool 5' read 0.8 kb
  BG830263 cDNA clone IMAGE:4906841 epithelioid carcinoma cell line 5' read
  BE910266 cDNA clone IMAGE:3905473 epithelioid carcinoma 5' read
  BF241488 cDNA clone IMAGE:4104995 from acute myelogenous leukemia 5' read
  BG332595 cDNA clone IMAGE:4551381 large cell carcinoma 5' read
  BG422192 cDNA clone IMAGE:4585541 renal cell adenocarcinoma 5' read
  BI092669 cDNA clone IMAGE:4999575 placenta 5' read
  BF238976 cDNA clone IMAGE:4132905 from chronic myelogenous leukemia 5' read
  BG331085 cDNA clone IMAGE:4549312 large cell carcinoma 5' read
  BE871758 cDNA clone IMAGE:3852361 adenocarcinoma 5' read
  AW672701 cDNA clone IMAGE:2899918 placenta 5' read
  AA375325 cDNA clone ATCC:179757 5' read
  BE905917 cDNA clone IMAGE:3897693 epithelioid carcinoma 5' read
  BG478387 cDNA clone IMAGE:4642158 melanotic melanoma 5' read Protein similarity
  BE539745 cDNA clone IMAGE:3448445 placenta 5' read
  BE906380 cDNA clone IMAGE:3900342 epithelioid carcinoma 5' read
  BI224601 cDNA clone IMAGE:5104736 choriocarcinoma 5' read
  BE261262 cDNA clone IMAGE:3501672 neuroblastoma 5' read
  BI116744 cDNA clone IMAGE:5016897 small cell carcinoma 5' read
  BG107951 cDNA clone IMAGE:4365900 osteosarcoma, cell line 5' read
  BI199309 cDNA clone IMAGE:4895072 neuroblastoma 5' read
  BE563165 cDNA clone IMAGE:3689473 adenocarcinoma 5' read
  BE736784 cDNA clone IMAGE:3640531 adenocarcinoma 5' read
  BE563097 cDNA clone IMAGE:3689474 adenocarcinoma 5' read
  BG283990 cDNA clone IMAGE:4519986 adenocarcinoma, cell line 5' read
  BM014131 cDNA clone IMAGE:5416009 mammary adenocarcinoma, cell line 5' read
  BI859490 cDNA clone IMAGE:5394297 mammary adenocarcinoma, cell line 5' read
  AW245192 cDNA clone IMAGE:2819784 small cell carcinoma 5' read Protein similarity
  BE540336 cDNA clone IMAGE:3449478 placenta 5' read
  AU139785 cDNA clone PLACE1011326 placenta 5' read Protein similarity
  BE207179 cDNA clone IMAGE:2824158 small cell carcinoma 5' read Protein similarity
  BE905084 cDNA clone IMAGE:3898852 epithelioid carcinoma 5' read Protein similarity
  BE784639 cDNA clone IMAGE:3876883 large cell carcinoma 5' read Protein similarity
  BF346018 cDNA clone IMAGE:4154074 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BG831389 cDNA clone IMAGE:4908529 epithelioid carcinoma cell line 5' read Protein similarity
  BG765231 cDNA clone IMAGE:4863803 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  AL134282 cDNA clone DKFZp547I154 brain 5' read Protein similarity
  BE906663 cDNA clone IMAGE:3900263 epithelioid carcinoma 5' read Protein similarity
  BF689848 cDNA clone IMAGE:4298469 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BM050910 cDNA clone IMAGE:5424420 normal pigmented retinal epithelium 5' read
  BM047953 cDNA clone IMAGE:5432575 carcinoma, cell line 5' read
  BE909557 cDNA clone IMAGE:3904639 epithelioid carcinoma 5' read Protein similarity
  BE890278 cDNA clone IMAGE:3916950 melanotic melanoma 5' read Protein similarity
  BI916004 cDNA clone IMAGE:5248446 brain 5' read Protein similarity
  BF034211 cDNA clone IMAGE:3860230 adenocarcinoma 5' read Protein similarity
  BI457248 cDNA clone IMAGE:5258286 epithelioid carcinoma cell line 5' read Protein similarity
  BE871300 cDNA clone IMAGE:3852934 adenocarcinoma 5' read Protein similarity
  AA091240 cDNA clone (no-name) heart 5' read Protein similarity
  BE253039 cDNA clone IMAGE:3357275 retinoblastoma 5' read
  BE255817 cDNA clone IMAGE:3350766 retinoblastoma 5' read
  BG403637 cDNA clone IMAGE:4526460 transitional cell papilloma, cell line 5' read Protein similarity
  BG770092 cDNA clone IMAGE:4878055 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BG437345 cDNA clone IMAGE:4622506 large cell carcinoma 5' read Protein similarity
  BE617148 cDNA clone IMAGE:3845879 adenocarcinoma 5' read Protein similarity
  BG490439 cDNA clone IMAGE:4637949 large cell carcinoma 5' read Protein similarity
  BG421274 cDNA clone IMAGE:4589920 renal cell adenocarcinoma 5' read Protein similarity
  BE616957 cDNA clone IMAGE:3845939 adenocarcinoma 5' read Protein similarity
  BI160583 cDNA clone IMAGE:5018466 epithelioid carcinoma cell line 5' read Protein similarity
  BG682170 cDNA clone IMAGE:4754392 squamous cell carcinoma 5' read Protein similarity
  BI906208 cDNA clone IMAGE:5212348 leukocyte 5' read Protein similarity
  BE252828 cDNA clone IMAGE:3353541 retinoblastoma 5' read Protein similarity
  AL046441 cDNA clone DKFZp434P187 testis 5' read Protein similarity
  BF310144 cDNA clone IMAGE:4137884 rhabdomyosarcoma 5' read Protein similarity
  AU132107 cDNA clone NT2RP3003813 5' read Protein similarity
  BG723072 cDNA clone IMAGE:4823214 testis, cell line 5' read Protein similarity
  BF685620 cDNA clone IMAGE:4303723 leiomyosarcoma cell line 5' read
  AU127891 cDNA clone NT2RP2002291 5' read Protein similarity
  BE907134 cDNA clone IMAGE:3902853 epithelioid carcinoma 5' read Protein similarity
  AU122497 cDNA clone MAMMA1002505 mammary gland 5' read Protein similarity
  BI821391 cDNA clone IMAGE:5178974 pooled brain, lung, testis 5' read Protein similarity
  BG281326 cDNA clone IMAGE:4544424 melanotic melanoma 5' read Protein similarity
  BE895754 cDNA clone IMAGE:3917824 melanotic melanoma 5' read Protein similarity
  BI194530 cDNA clone IMAGE:5091130 epithelioid carcinoma cell line 5' read
  BI559892 cDNA clone IMAGE:5295604 testis, cell line 5' read
  BE535326 cDNA clone IMAGE:3445408 placenta 5' read Protein similarity
  BI909876 cDNA clone IMAGE:5219521 leukocyte 5' read Protein similarity
  BE729232 cDNA clone IMAGE:3830367 melanotic melanoma 5' read Protein similarity
  BG718754 cDNA clone IMAGE:4828967 testis, cell line 5' read Protein similarity