Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.109150
Description:SH3-domain binding protein 5 (BTK-associated)
Best-Of-UniGene (BOU) SequenceAL133111
Genomic Coordiantes Displayed:Bases 2190000 to 2225000 of contig Hs3_5925_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.109150.jpeg
Best sense EST/protein match:AL133111 matched ref|XP_072295.1| (XM_072295) hypothetical protein XP_072295 [Homo sapiens] (E = 2e-33)
Best antisense EST/protein match:BF970716 matched ref|NP_004835.1| (NM_004844) similar to SH3-domain binding protein 5 (E = e-116)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BI666590 cDNA clone IMAGE:5310883 hypothalamus, cell line 5' read Protein similarity
  BE735056 cDNA clone IMAGE:3843265 choriocarcinoma 5' read Protein similarity
  BI857861 cDNA clone IMAGE:5397439 mammary adenocarcinoma, cell line 5' read
  BI226693 cDNA clone IMAGE:5096046 burkitt lymphoma 5' read Protein similarity
  BI602813 cDNA clone IMAGE:5294848 hypothalamus, cell line 5' read Protein similarity
  BG762647 cDNA clone IMAGE:4859843 melanotic melanoma, high mdr (cell line) 5' read
  BG699252 cDNA clone IMAGE:4811716 hippocampus, cell line 5' read Protein similarity
  BG479234 cDNA clone IMAGE:4649772 choriocarcinoma 5' read Protein similarity
  BI596479 cDNA clone IMAGE:5285670 hypothalamus, cell line 5' read Protein similarity
  BE735288 cDNA clone IMAGE:3843860 choriocarcinoma 5' read Protein similarity
  BG482566 cDNA clone IMAGE:4653207 choriocarcinoma 5' read
  BI597228 cDNA clone IMAGE:5302249 hypothalamus, cell line 5' read Protein similarity
  BE732002 cDNA clone IMAGE:3841593 choriocarcinoma 5' read Protein similarity
  BE280996 cDNA clone IMAGE:3504959 choriocarcinoma 5' read Protein similarity
  BI118210 cDNA clone IMAGE:5014647 small cell carcinoma 5' read Protein similarity
  BG437880 cDNA clone IMAGE:4622044 large cell carcinoma 5' read Protein similarity
  BF125120 cDNA clone IMAGE:4025288 melanotic melanoma 5' read Protein similarity
  BE389042 cDNA clone IMAGE:3606455 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BF792169 cDNA clone IMAGE:4344897 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BI116333 cDNA clone IMAGE:5017362 small cell carcinoma 5' read Protein similarity
  BG475051 cDNA clone IMAGE:4620157 melanotic melanoma 5' read Protein similarity
  BG108620 cDNA clone IMAGE:4423080 melanotic melanoma 5' read Protein similarity
  BG761357 cDNA clone IMAGE:4858448 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BM048382 cDNA clone IMAGE:5452134 carcinoma, cell line 5' read
  BG475957 cDNA clone IMAGE:4639481 melanotic melanoma 5' read Protein similarity
  BI334433 cDNA clone IMAGE:5140757 choriocarcinoma 5' read Protein similarity
  BF975561 cDNA clone IMAGE:4336994 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BG775248 cDNA clone IMAGE:4761350 carcinoma, cell line 5' read Protein similarity
  BF027027 cDNA clone IMAGE:3954015 melanotic melanoma 5' read Protein similarity
  BG030766 cDNA clone IMAGE:4392086 mammary adenocarcinoma, cell line 5' read Protein similarity
  BE409691 cDNA clone IMAGE:3636225 choriocarcinoma 5' read Protein similarity
  BE902757 cDNA clone IMAGE:3958223 choriocarcinoma 5' read Protein similarity
  BE901328 cDNA clone IMAGE:3957528 choriocarcinoma 5' read Protein similarity
  BG478679 cDNA clone IMAGE:4643731 melanotic melanoma 5' read Protein similarity
  BG282395 cDNA clone IMAGE:4544880 melanotic melanoma 5' read Protein similarity
  BE277007 cDNA clone IMAGE:3050805 melanotic melanoma 5' read Protein similarity
  BE302470 cDNA clone IMAGE:2905309 melanotic melanoma 5' read Protein similarity
  H08660 cDNA clone IMAGE:45742 brain 5' read 1.7 kbProtein similarity
  AW673562 cDNA clone IMAGE:2900470 placenta 5' read Protein similarity
  BE409044 cDNA clone IMAGE:3637797 choriocarcinoma 5' read Protein similarity
  BE900831 cDNA clone IMAGE:3957278 choriocarcinoma 5' read Protein similarity
  BG928362 cDNA clone (no-name) cartilage Protein similarity
  BI254342 cDNA clone IMAGE:5115848 choriocarcinoma 5' read Protein similarity
  BE730708 cDNA clone IMAGE:3845462 choriocarcinoma 5' read
  AA356441 cDNA clone ATCC:158579 5' read Protein similarity
  BI829799 cDNA clone IMAGE:5171250 medulla 5' read Protein similarity
  AV708453 cDNA clone ADCAXD05 adrenal gland 5' read Protein similarity
  BF970716 cDNA clone IMAGE:4361928 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BF176367 cDNA clone (no-name) blood Protein similarity
  AA347460 cDNA clone ATCC:103387 heart 5' read Protein similarity
  BI260777 cDNA clone IMAGE:5110258 choriocarcinoma 5' read Protein similarity
  AW129054 cDNA clone IMAGE:2615562 brain 3' read Protein similarity
  BG758098 cDNA clone IMAGE:4852598 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BE727935 cDNA clone IMAGE:3830082 melanotic melanoma 5' read Protein similarity
  AV704621 cDNA clone ADBCJH01 adrenal gland 5' read Protein similarity
  BE729486 cDNA clone IMAGE:3926219 melanotic melanoma 5' read Protein similarity
  BG281286 cDNA clone IMAGE:4544076 melanotic melanoma 5' read Protein similarity
  BG333122 cDNA clone IMAGE:4548627 large cell carcinoma 5' read Protein similarity
  BG480985 cDNA clone IMAGE:4652795 choriocarcinoma 5' read Protein similarity
  R25676 cDNA clone IMAGE:35156 brain 5' read 1.3 kbProtein similarity
  BE734753 cDNA clone IMAGE:3842104 choriocarcinoma 5' read
  AW178597 cDNA clone (no-name) head_neck
  AV705806 cDNA clone ADBCRH01 adrenal gland 5' read Protein similarity
  AV709953 cDNA clone ADCAQG12 adrenal gland 5' read Protein similarity
  BI334256 cDNA clone IMAGE:5139905 choriocarcinoma 5' read Protein similarity
  BI829954 cDNA clone IMAGE:5171759 medulla 5' read Protein similarity
  AA311134 cDNA clone ATCC:157111 5' read Protein similarity
  AV702860 cDNA clone ADBBVF01 adrenal gland 5' read Protein similarity
  BI084160 cDNA clone IMAGE:5014401 epidermoid carcinoma, cell line 5' read Protein similarity
  BI084952 cDNA clone IMAGE:5014401 epidermoid carcinoma, cell line 3' read Protein similarity
  AV703512 cDNA clone ADBCNF06 adrenal gland 5' read Protein similarity
  AA328330 cDNA clone ATCC:130009 whole embryo 5' read Protein similarity
  BM011352 cDNA clone IMAGE:5457993 neuroblastoma, cell line 5' read Protein similarity
  BE393454 cDNA clone IMAGE:3631732 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BE207387 cDNA clone IMAGE:2905309 melanotic melanoma 3' read
  AI654304 cDNA clone IMAGE:2216041 ovary 3' read 1.0 kb
  AI034076 cDNA clone IMAGE:1656095 pool 3' read
  AW675771 cDNA clone IMAGE:2900343 placenta 3' read
  AW339640 cDNA clone IMAGE:2919104 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read Protein similarity
  AW089359 cDNA clone IMAGE:2592639 brain 3' read
  H08661 cDNA clone IMAGE:45742 brain 3' read 1.7 kb
  BM012876 cDNA clone IMAGE:5459906 neuroblastoma, cell line 5' read Protein similarity
  AI866258 cDNA clone IMAGE:2426208 uterus 3' read 1.5 kb
  BM012094 cDNA clone IMAGE:5458928 neuroblastoma, cell line 5' read Protein similarity
  BG682790 cDNA clone IMAGE:4761957 neuroblastoma, cell line 5' read Protein similarity
  BM011449 cDNA clone IMAGE:5458002 neuroblastoma, cell line 5' read Protein similarity
  T53777 cDNA clone IMAGE:68985 placenta 5' read 0.5 kb
  AW662735 cDNA clone IMAGE:2974339 colon 3' read
  AW731709 cDNA clone IMAGE:2900470 placenta 3' read
  AI933009 cDNA clone IMAGE:2459481 stomach 3' read 1.8 kb
  T32744 cDNA clone ATCC:103387 heart 3' read
  AW439218 cDNA clone IMAGE:2779354 uterus 3' read Protein similarity
  AA342940 cDNA clone ATCC:144422 spleen 3' read
  AW439709 cDNA clone IMAGE:2890213 uterus 3' read Protein similarity
  BE677688 cDNA clone IMAGE:3280237 dorsal root ganglia 3' read
  T54168 cDNA clone IMAGE:68985 placenta 3' read 0.5 kb
  AW071595 cDNA clone IMAGE:2568693 four pooled high-grade tumors, including two primary tumors 3' read 1.4 kb
  AA665964 cDNA clone IMAGE:1127084 kidney 3' read
  AW157770 cDNA clone IMAGE:2783161 frontal lobe 3' read Protein similarity
  R45644 cDNA clone IMAGE:35156 brain 3' read 1.3 kb
  H08717 cDNA clone IMAGE:45411 brain 3' read 2.9 kb
  AI690390 cDNA clone IMAGE:2276527 uterus 3' read 3.1 kb
  BG682998 cDNA clone IMAGE:4762044 neuroblastoma, cell line 5' read Protein similarity
  AV702193 cDNA clone ADBCOH04 adrenal gland 5' read Protein similarity
  AV703821 cDNA clone ADBAYE09 adrenal gland 5' read Protein similarity
  AV702533 cDNA clone ADBBTF07 adrenal gland 5' read Protein similarity
  AV707911 cDNA clone ADBCRC12 adrenal gland 5' read
  AI753049 cDNA clone HBMSC_cr04c08 bone 3' read
  BE387406 cDNA clone IMAGE:3615362 melanotic melanoma 5' read
  AA583317 cDNA clone IMAGE:1086101 germ cell 3' read 0.4 kbPolyadenylation signal
  BG707416 cDNA clone IMAGE:4795591 hypothalamus, cell line 5' read Protein similarity
  BE907050 cDNA clone IMAGE:3901772 epithelioid carcinoma 5' read
  AV703873 cDNA clone ADBAPC03 adrenal gland 5' read
  BG541913 cDNA clone IMAGE:4694138 lung 5' read
  BG484504 cDNA clone IMAGE:4618334 lung 5' read
  AA091515 cDNA clone (no-name) heart 5' read
  T39865 cDNA clone IMAGE:61277 spleen 5' read
  AV705537 cDNA clone ADBAJF08 adrenal gland 5' read
  BE384564 cDNA clone IMAGE:3618859 melanotic melanoma 5' read
  BG105193 cDNA clone IMAGE:4422729 adrenal cortex carcinoma, cell line 5' read
  D52298 cDNA clone GEN073G10 brain 5' read
  D53098 cDNA clone GEN098E08 brain 5' read
  AV709678 cDNA clone ADCAQF11 adrenal gland 5' read
  AV709055 cDNA clone ADCANH04 adrenal gland 5' read
  AV746045 cDNA clone NPAAEA07 pituitary 5' read
  AV745582 cDNA clone NPAAJB10 pituitary 5' read
  BI912965 cDNA clone IMAGE:5240720 brain 5' read
  BG775877 cDNA clone IMAGE:4761350 carcinoma, cell line 3' read
  AV727389 cDNA clone HTCCEF10 hypothalamus 5' read
  F22444 cDNA clone 037X3-19 muscle
  BI493199 cDNA clone IMAGE:2540667 ear 5' read
  C14585 cDNA clone GEN073G10 aorta 3' read Polyadenylation signal
  D53097 cDNA clone GEN098E08 brain 3' read Polyadenylation signal
  BF941066 cDNA clone IMAGE:3280450 dorsal root ganglia 3' read Polyadenylation signal
  C14755 cDNA clone GEN086E07 aorta 3' read Polyadenylation signal
  D51039 cDNA clone GEN008C01 brain 3' read Polyadenylation signal
  AI620592 cDNA clone IMAGE:2258841 stomach 3' read 1.1 kbPolyadenylation signal
  AW338082 cDNA clone IMAGE:2832969 pancreas 3' read Polyadenylation signal
  AW731795 cDNA clone IMAGE:2844066 3' read Polyadenylation signal
  BI495761 cDNA clone IMAGE:2539927 ear 5' read Polyadenylation signal
  BI495760 cDNA clone IMAGE:2539927 ear 3' read
  AW073057 cDNA clone IMAGE:2568700 four pooled high-grade tumors, including two primary tumors 3' read 1.4 kbPolyadenylation signal
  AV708964 cDNA clone ADCALH12 adrenal gland 5' read
  BG105579 cDNA clone IMAGE:4421837 adrenal cortex carcinoma, cell line 5' read
  BE729026 cDNA clone IMAGE:3830689 melanotic melanoma 5' read
  AW090616 cDNA clone IMAGE:2591903 brain 3' read Polyadenylation signal
  AV706371 cDNA clone ADBCNB12 adrenal gland 5' read

SENSE ESTs

  AI754162 cDNA clone HBMSC_cr21b11 bone 3' read Polyadenylation signal
  BI496471 cDNA clone IMAGE:2538334 ear 3' read Polyadenylation signal