Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.11355
Description:thymopoietin
Best-Of-UniGene (BOU) SequenceNM_003276
Genomic Coordiantes Displayed:Bases 948000 to 1102000 of contig Hs12_9838_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.11355.jpeg
Best sense EST/protein match:AU129593 matched pir||G01161 thymopoietin alpha - human (E = e-116)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BF792977 cDNA clone IMAGE:4346115 adrenal cortex carcinoma, cell line 5' read
  BG257506 cDNA clone IMAGE:4508770 embryonal carcinoma, cell line 5' read
  AA641234 cDNA clone IMAGE:1173692 prostate 3' read
  BE908245 cDNA clone IMAGE:3902308 epithelioid carcinoma 5' read
  BF791439 cDNA clone IMAGE:4343753 adrenal cortex carcinoma, cell line 5' read
  AI033441 cDNA clone IMAGE:1654423 pool 3' read 0.7 kbPolyadenylation signal
  BI459483 cDNA clone IMAGE:5266100 testis, cell line 5' read
  N56134 cDNA clone J7726 heart 5' read
  BE733263 cDNA clone IMAGE:3844252 choriocarcinoma 5' read
  BI831361 cDNA clone IMAGE:5166562 medulla 5' read
  BG479345 cDNA clone IMAGE:4649875 choriocarcinoma 5' read
  BG335914 cDNA clone IMAGE:4542466 choriocarcinoma 5' read
  BI553771 cDNA clone IMAGE:5261861 hippocampus, cell line 5' read Protein similarity
  BF128986 cDNA clone IMAGE:4054249 primary b-cells from tonsils (cell line) 5' read
  BI828425 cDNA clone IMAGE:5170172 medulla 5' read Protein similarity
  BG023858 cDNA clone IMAGE:4394881 duodenal adenocarcinoma, cell line 5' read
  BI562620 cDNA clone IMAGE:5298997 testis, cell line 5' read Protein similarity
  BI831557 cDNA clone IMAGE:5166333 medulla 5' read Protein similarity
  BI850509 cDNA clone IMAGE:4394881 duodenal adenocarcinoma, cell line 5' read
  BI559714 cDNA clone IMAGE:5295165 testis, cell line 5' read Protein similarity
  BG771430 cDNA clone IMAGE:4837059 testis, cell line 5' read Protein similarity
  BG829717 cDNA clone IMAGE:4899332 epithelioid carcinoma cell line 5' read Protein similarity
  BI254906 cDNA clone IMAGE:5113269 choriocarcinoma 5' read Protein similarity
  BE731763 cDNA clone IMAGE:3842948 choriocarcinoma 5' read Protein similarity
  BI223596 cDNA clone IMAGE:5104792 choriocarcinoma 5' read
  AA554467 cDNA clone IMAGE:1015064 colon 3' read 0.9 kb

SENSE ESTs

  BG494760 cDNA clone IMAGE:4671779 mucoepidermoid carcinoma 5' read
  BG337236 cDNA clone IMAGE:4552693 leiomyosarcoma cell line 5' read Protein similarity
  BG339441 cDNA clone IMAGE:4555431 leiomyosarcoma cell line 5' read Protein similarity
  BG336999 cDNA clone IMAGE:4552429 leiomyosarcoma cell line 5' read Protein similarity
  BF132774 cDNA clone IMAGE:4101817 mucoepidermoid carcinoma 5' read
  BF966465 cDNA clone IMAGE:4375844 hippocampus, cell line 5' read Protein similarity
  AU128237 cDNA clone NT2RP2003038 5' read Protein similarity
  BI910029 cDNA clone IMAGE:5216939 leukocyte 5' read Protein similarity
  R61657 cDNA clone IMAGE:42522 brain 5' read 0.7 kbProtein similarity
  AU142415 cDNA clone Y79AA1000295 5' read Protein similarity
  BG257737 cDNA clone IMAGE:4508359 embryonal carcinoma, cell line 5' read Protein similarity
  BI859519 cDNA clone IMAGE:5394305 mammary adenocarcinoma, cell line 5' read Protein similarity
  T80487 cDNA clone IMAGE:24604 brain 5' read 0.9 kb
  AI081687 cDNA clone IMAGE:1653193 pool 3' read 0.6 kbProtein similarity
  BE886841 cDNA clone IMAGE:3909626 leiomyosarcoma 5' read Protein similarity
  BE866926 cDNA clone IMAGE:3846805 adenocarcinoma 5' read
  AI076113 cDNA clone IMAGE:1673287 pool 3' read Protein similarity
  BI458996 cDNA clone IMAGE:5265557 testis, cell line 5' read Protein similarity
  BG718794 cDNA clone IMAGE:4828956 testis, cell line 5' read Protein similarity
  AA678255 cDNA clone IMAGE:431999 pool 3' read Protein similarity
  AL135621 cDNA clone DKFZp762H134 melanoma (mewo cell line) 5' read Protein similarity
  AA777347 cDNA clone IMAGE:448648 pool 3' read Protein similarity
  AA314931 cDNA clone ATCC:113075 5' read Protein similarity
  AV685036 cDNA clone GKCAID10 hepatocellular carcinoma 5' read Protein similarity
  AI624091 cDNA clone IMAGE:2231190 uterus 3' read 0.7 kbProtein similarity
  BG283015 cDNA clone IMAGE:4518890 adenocarcinoma, cell line 5' read Protein similarity
  AU128395 cDNA clone NT2RP2003350 5' read Protein similarity
  AA676998 cDNA clone IMAGE:454083 pool 3' read Protein similarity
  BI089494 cDNA clone IMAGE:4996089 placenta 5' read Protein similarity
  BG492817 cDNA clone IMAGE:4655673 mucoepidermoid carcinoma 5' read Protein similarity
  AA095709 cDNA clone (no-name) heart 5' read Protein similarity
  AL597130 cDNA clone DKFZp313H0611 5' read Protein similarity
  AL597131 cDNA clone DKFZp313H0711 5' read Protein similarity
  AU129593 cDNA clone NT2RP2005846 5' read Protein similarity
  BF978381 cDNA clone IMAGE:4307825 melanotic melanoma, high mdr 5' read Protein similarity
  BF570854 cDNA clone IMAGE:4243205 melanotic melanoma, high mdr 5' read Protein similarity
  BE787042 cDNA clone IMAGE:3879232 large cell carcinoma 5' read Protein similarity
  BF983366 cDNA clone IMAGE:4396524 duodenal adenocarcinoma, cell line 5' read Protein similarity
  BM011916 cDNA clone IMAGE:5458565 neuroblastoma, cell line 5' read Protein similarity
  BG256583 cDNA clone IMAGE:4478457 embryonal carcinoma, cell line 5' read Protein similarity
  AA360418 cDNA clone ATCC:164569 lymph 5' read Protein similarity
  BF246698 cDNA clone IMAGE:4075390 glioblastoma 5' read Protein similarity
  BG337110 cDNA clone IMAGE:4552413 leiomyosarcoma cell line 5' read Protein similarity
  BE747696 cDNA clone IMAGE:3927521 adenocarcinoma cell line 5' read Protein similarity
  BI333814 cDNA clone IMAGE:5141333 choriocarcinoma 5' read Protein similarity
  BI334803 cDNA clone IMAGE:5140949 choriocarcinoma 5' read Protein similarity
  BF242050 cDNA clone IMAGE:4108635 from acute myelogenous leukemia 5' read Protein similarity
  BF035156 cDNA clone IMAGE:3857900 adenocarcinoma 5' read Protein similarity
  BG778888 cDNA clone IMAGE:4807343 adenocarcinoma 5' read Protein similarity
  BF184012 cDNA clone IMAGE:4063806 from chronic myelogenous leukemia 5' read Protein similarity
  BE545568 cDNA clone IMAGE:3456417 choriocarcinoma 5' read Protein similarity
  BE566945 cDNA clone IMAGE:3683226 carcinoma, cell line 5' read Protein similarity
  BF185543 cDNA clone IMAGE:4045067 from acute myelogenous leukemia 5' read Protein similarity
  BE778936 cDNA clone IMAGE:3868544 retinoblastoma 5' read
  BI091048 cDNA clone IMAGE:4996641 placenta 5' read
  AA306426 cDNA clone ATCC:160754 5' read
  AA310464 cDNA clone ATCC:156495 5' read
  BM005745 cDNA clone IMAGE:5433300 hepatocellular carcinoma, cell line 5' read
  BF571706 cDNA clone IMAGE:4243624 melanotic melanoma, high mdr 5' read
  BF184271 cDNA clone IMAGE:4063928 from chronic myelogenous leukemia 5' read
  BE866655 cDNA clone IMAGE:3961885 carcinoma, cell line 5' read
  BF035292 cDNA clone IMAGE:3860685 adenocarcinoma 5' read
  BF184388 cDNA clone IMAGE:4063744 from chronic myelogenous leukemia 5' read
  BF183971 cDNA clone IMAGE:4063721 from chronic myelogenous leukemia 5' read
  BE739405 cDNA clone IMAGE:3826024 hypernephroma 3' read
  BF698802 cDNA clone IMAGE:4283293 primitive neuroectoderm 5' read
  BG026123 cDNA clone IMAGE:4386752 osteosarcoma, cell line 5' read
  BI496690 cDNA clone IMAGE:2538302 ear 5' read
  AW272611 cDNA clone IMAGE:2800949 colon 3' read Polyadenylation signal
  AI309940 cDNA clone IMAGE:1913992 kidney 3' read 2.4 kb
  BG291906 cDNA clone IMAGE:4515301 transitional cell papilloma, cell line 5' read Polyadenylation signal
  AI609109 cDNA clone IMAGE:2267167 normal gingiva (cell line from immortalized keratinocytes) 3' read 2.0 kbPolyadenylation signal
  T25858 cDNA clone CDDIR133 3' read Polyadenylation signal
  AA563903 cDNA clone IMAGE:1014056 colon 3' read 1.0 kb
  AW769336 cDNA clone IMAGE:3005822 colon 3' read Polyadenylation signal
  BE042474 cDNA clone IMAGE:3038136 colon 3' read Polyadenylation signal
  BE535570 cDNA clone IMAGE:3446226 placenta 5' read
  BE893413 cDNA clone IMAGE:3921875 melanotic melanoma 5' read
  AW302530 cDNA clone IMAGE:2827147 three pooled meningiomas 3' read Polyadenylation signal
  AI973254 cDNA clone IMAGE:2491454 uterus 3' read Polyadenylation signal
  AI431450 cDNA clone IMAGE:2120732 lymph 3' read 0.8 kbPolyadenylation signal
  AW439125 cDNA clone IMAGE:2778719 uterus 3' read Polyadenylation signal
  BI496689 cDNA clone IMAGE:2538302 ear 3' read Polyadenylation signal
  AI499486 cDNA clone IMAGE:2177854 uterus 3' read 2.5 kbPolyadenylation signal
  BF185310 cDNA clone IMAGE:4064596 from chronic myelogenous leukemia 5' read Protein similarity
  BE748221 cDNA clone IMAGE:3838354 from acute myelogenous leukemia 5' read Protein similarity
  BG391171 cDNA clone IMAGE:4536623 embryonal carcinoma, cell line 5' read Protein similarity
  BF132370 cDNA clone IMAGE:3930861 mucoepidermoid carcinoma 5' read
  BG613670 cDNA clone IMAGE:4770729 embryonal carcinoma 5' read Protein similarity
  AW515144 cDNA clone IMAGE:2809146 uterus 3' read Protein similarity
  AI248956 cDNA clone IMAGE:1850289 pool 3' read Protein similarity
  BG402764 cDNA clone IMAGE:4525591 transitional cell papilloma, cell line 5' read Protein similarity
  AA653163 cDNA clone IMAGE:1127717 kidney 3' read 0.6 kb
  R60990 cDNA clone IMAGE:42522 brain 3' read 0.7 kbProtein similarity
  H15244 cDNA clone IMAGE:49582 brain 3' read 0.9 kbProtein similarity
  H29456 cDNA clone IMAGE:49849 brain 3' read 1.7 kbProtein similarity
  BF984972 cDNA clone IMAGE:4399702 duodenal adenocarcinoma, cell line 5' read Protein similarity
  H29325 cDNA clone IMAGE:52632 brain 3' read 1.8 kb
  R37730 cDNA clone IMAGE:26693 brain 3' read 0.9 kbProtein similarity
  BG616175 cDNA clone IMAGE:4773470 embryonal carcinoma 5' read Protein similarity
  BG250153 cDNA clone IMAGE:4470639 adenocarcinoma, cell line 5' read Protein similarity
  BE780331 cDNA clone IMAGE:3871685 retinoblastoma 5' read
  BF698838 cDNA clone IMAGE:4283351 primitive neuroectoderm 5' read
  AV711962 cDNA clone DCAABC06 5' read
  BF794972 cDNA clone IMAGE:4340176 lymphoma, cell line 5' read
  BG779295 cDNA clone IMAGE:4805949 adenocarcinoma 5' read
  BG291593 cDNA clone IMAGE:4514878 transitional cell papilloma, cell line 5' read
  BG259715 cDNA clone IMAGE:4510746 embryonal carcinoma, cell line 5' read
  BG492452 cDNA clone IMAGE:4655279 mucoepidermoid carcinoma 5' read
  AA330787 cDNA clone ATCC:132408 whole embryo 5' read
  BG499964 cDNA clone IMAGE:4667722 adenocarcinoma 5' read
  BG563942 cDNA clone IMAGE:4712679 liver 5' read
  BF699666 cDNA clone IMAGE:4284091 primitive neuroectoderm 5' read
  AA214686 cDNA clone (no-name) 5' read
  BI258586 cDNA clone IMAGE:5109146 choriocarcinoma 5' read Protein similarity
  BG676381 cDNA clone IMAGE:4747973 squamous cell carcinoma 5' read Protein similarity
  AA315317 cDNA clone ATCC:110252 5' read
  BG771395 cDNA clone IMAGE:4840072 adenocarcinoma 5' read
  BE748433 cDNA clone IMAGE:3838798 from acute myelogenous leukemia 5' read
  BI089957 cDNA clone IMAGE:4998536 placenta 5' read
  AA362037 cDNA clone ATCC:166195 lymph 5' read
  BF304841 cDNA clone IMAGE:4122116 rhabdomyosarcoma 5' read
  AA334012 cDNA clone ATCC:135841 whole embryo 5' read
  AA321985 cDNA clone ATCC:122479 brain 5' read
  BF104013 cDNA clone IMAGE:4041691 embryonal carcinoma 5' read
  BE567479 cDNA clone IMAGE:3683042 carcinoma, cell line 5' read
  BE788546 cDNA clone IMAGE:3878948 large cell carcinoma 5' read
  BG614538 cDNA clone IMAGE:4773288 embryonal carcinoma 5' read
  BG110440 cDNA clone IMAGE:4366405 osteosarcoma, cell line 5' read
  BG752184 cDNA clone IMAGE:4875003 normal pigmented retinal epithelium 5' read
  BE748952 cDNA clone IMAGE:3838798 from acute myelogenous leukemia 3' read
  BG613517 cDNA clone IMAGE:4772555 embryonal carcinoma 5' read
  AA316743 cDNA clone ATCC:113550 5' read
  AW021765 cDNA clone IMAGE:2484777 ear 5' read
  BE748520 cDNA clone IMAGE:3838354 from acute myelogenous leukemia 3' read
  BI858913 cDNA clone IMAGE:5398309 mammary adenocarcinoma, cell line 5' read
  BI861677 cDNA clone IMAGE:5398333 mammary adenocarcinoma, cell line 5' read
  AA329646 cDNA clone ATCC:131378 whole embryo 5' read
  BF210995 cDNA clone IMAGE:4097877 from chronic myelogenous leukemia 5' read
  AA327938 cDNA clone ATCC:129589 whole embryo 5' read
  BF218310 cDNA clone IMAGE:4094388 glioblastoma 5' read
  AI749195 cDNA clone IMAGE:2374498 colon 3' read
  AA777529 cDNA clone IMAGE:448402 pool 3' read Polyadenylation signal
  AI979210 cDNA clone IMAGE:2493201 uterus 3' read 2.4 kbPolyadenylation signal
  AW474781 cDNA clone IMAGE:2852403 lymph 3' read Polyadenylation signal
  AV681835 cDNA clone GKBAJA01 hepatocellular carcinoma 5' read
  AI753563 cDNA clone HBMSC_cr12c05 bone 3' read Polyadenylation signal
  BE677204 cDNA clone IMAGE:3279415 dorsal root ganglia 3' read Polyadenylation signal
  AI749805 cDNA clone IMAGE:2356212 aorta 3' read Polyadenylation signal
  N66265 cDNA clone IMAGE:285204 ear 3' read Polyadenylation signal
  AI347536 cDNA clone IMAGE:1916571 kidney 3' read 1.0 kbPolyadenylation signal
  AI289097 cDNA clone IMAGE:1991749 uterus 3' read 1.2 kbPolyadenylation signal
  H87991 cDNA clone IMAGE:252607 ear 5' read 0.4 kb
  AW192437 cDNA clone IMAGE:2681307 pancreas 3' read Polyadenylation signal
  AI610537 cDNA clone IMAGE:2187992 stomach 3' read 0.4 kbPolyadenylation signal
  H87924 cDNA clone IMAGE:252656 ear 5' read 0.5 kb
  H88320 cDNA clone IMAGE:252656 ear 3' read 0.5 kb
  BI492115 cDNA clone IMAGE:2483872 ear 3' read Polyadenylation signal
  AW021168 cDNA clone IMAGE:2483872 ear 5' read Polyadenylation signal
  AW519135 cDNA clone IMAGE:2877184 pancreas 3' read Polyadenylation signal
  AW105550 cDNA clone IMAGE:2595508 ovary 3' read Polyadenylation signal