Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.118738
Description:KIAA0800 gene product
Best-Of-UniGene (BOU) SequenceNM_014703
Genomic Coordiantes Displayed:Bases 138000 to 152000 of contig Hs3_22650_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.118738.jpeg
Best sense EST/protein match:AU132143 matched pir||T12529 hypothetical protein DKFZp434P113.1 - human (fragment) (E = e-139)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI628198 cDNA clone IMAGE:2279849 uterus 3' read
  AI628176 cDNA clone IMAGE:2279825 uterus 3' read 1.3 kb
  H05598 cDNA clone IMAGE:43396 brain 3' read 1.9 kbPolyadenylation signal
  F15768 cDNA clone NOTAVAIL00238
  Z39174 cDNA clone c12h09 brain 3' read Polyadenylation signal
  BE868682 cDNA clone IMAGE:3849867 adenocarcinoma 5' read
  BE350542 cDNA clone IMAGE:3146805 2 pooled wilms' tumors, one primary and one metastatic to 3' read Polyadenylation signal
  AA192622 cDNA clone IMAGE:628112 muscle 3' read
  BI494625 cDNA clone IMAGE:2539172 ear 5' read Polyadenylation signal
  BE779689 cDNA clone IMAGE:3868561 retinoblastoma 5' read
  BM021378 cDNA clone (no-name) islets of langerhans 5' read
  BI758616 cDNA clone IMAGE:5197453 brain 5' read
  BG170138 cDNA clone IMAGE:4424842 hypernephroma, cell line 5' read
  BG253605 cDNA clone IMAGE:4472696 adenocarcinoma, cell line 5' read
  Z43082 cDNA clone c12h09 brain
  AA205100 cDNA clone IMAGE:647107 5' read
  AA369886 cDNA clone ATCC:174452 prostate 5' read
  BE782301 cDNA clone IMAGE:3872995 retinoblastoma 5' read
  H12959 cDNA clone IMAGE:43396 brain 5' read 1.9 kb
  BG028769 cDNA clone IMAGE:4387743 osteosarcoma, cell line 5' read Protein similarity
  AA337479 cDNA clone ATCC:139292 uterus 5' read

SENSE ESTs

  BI459121 cDNA clone IMAGE:5265455 testis, cell line 5' read
  BG756622 cDNA clone IMAGE:4853730 primary b-cells from tonsils (cell line) 5' read
  BG496191 cDNA clone IMAGE:4658984 mucoepidermoid carcinoma 5' read Protein similarity
  BE616060 cDNA clone IMAGE:3611461 adenocarcinoma 5' read Protein similarity
  BG392800 cDNA clone IMAGE:4538754 embryonal carcinoma, cell line 5' read Protein similarity
  AU132143 cDNA clone NT2RP3003870 5' read Protein similarity
  AL039782 cDNA clone DKFZp434A1912 testis 5' read Protein similarity
  AA317198 cDNA clone ATCC:117657 eye 5' read Protein similarity
  BG258628 cDNA clone IMAGE:4511002 embryonal carcinoma, cell line 5' read Protein similarity
  AV687667 cDNA clone GKCENH12 hepatocellular carcinoma 5' read Protein similarity
  AA383358 cDNA clone ATCC:187545 testis 5' read Protein similarity
  BF217296 cDNA clone IMAGE:4104416 glioblastoma 5' read Protein similarity
  BG027861 cDNA clone IMAGE:4389727 osteosarcoma, cell line 5' read Protein similarity
  AL039328 cDNA clone DKFZp434E0210 testis 5' read Protein similarity
  BE897065 cDNA clone IMAGE:3924485 melanotic melanoma 5' read Protein similarity
  BE271872 cDNA clone IMAGE:3141045 adenocarcinoma cell line 5' read Protein similarity
  BE898098 cDNA clone IMAGE:3925182 melanotic melanoma 5' read Protein similarity
  C03586 cDNA clone 3NHC1832 heart Protein similarity
  C04195 cDNA clone 3NHC2874 heart Protein similarity
  BG286755 cDNA clone IMAGE:4500097 transitional cell papilloma, cell line 5' read Protein similarity
  AL042454 cDNA clone DKFZp434E1121 testis 5' read Protein similarity
  BG178839 cDNA clone IMAGE:4429626 adenocarcinoma, cell line 5' read Protein similarity
  BG501487 cDNA clone IMAGE:4670225 adenocarcinoma 5' read Protein similarity
  BF030875 cDNA clone IMAGE:3827297 hypernephroma 5' read Protein similarity
  AW148953 cDNA clone IMAGE:2617360 kidney 3' read
  AU153735 cDNA clone NT2RP3003870 3' read
  AI539852 cDNA clone IMAGE:2204199 uterus 3' read 0.5 kb
  AI872858 cDNA clone IMAGE:2441237 uterus 3' read 2.0 kb
  BE616616 cDNA clone IMAGE:3610915 adenocarcinoma 5' read
  BE616005 cDNA clone IMAGE:3611771 adenocarcinoma 5' read
  BE615900 cDNA clone IMAGE:3611667 adenocarcinoma 5' read
  BE615599 cDNA clone IMAGE:3610916 adenocarcinoma 5' read
  AI620544 cDNA clone IMAGE:2258763 stomach 3' read 1.2 kb
  AW151440 cDNA clone IMAGE:2613757 uterus 3' read
  AW173517 cDNA clone IMAGE:2656604 uterus 3' read
  AI537219 cDNA clone IMAGE:2187038 stomach 3' read
  BG388616 cDNA clone IMAGE:4522243 embryonal carcinoma, cell line 5' read
  BG230639 cDNA clone IMAGE:4143521 lymphocyte 3' read Polyadenylation signal
  AI561328 cDNA clone IMAGE:2212013 uterus 3' read 2.1 kbPolyadenylation signal
  AW244029 cDNA clone IMAGE:2570087 five pooled sarcomas, including myxoid liposarcoma, solitary 3' read Polyadenylation signal