Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.12347
Description:hypothetical protein FLJ20047
Best-Of-UniGene (BOU) SequenceNM_017639
Genomic Coordiantes Displayed:Bases 232000 to 253000 of contig Hs4_22902_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.12347.jpeg
Best sense EST/protein match:NM_017639 matched ref|NP_060109.1| (NM_017639) hypothetical protein FLJ20047 [Homo sapiens] (E = 0.0)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10

This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

  U69189 cDNA clone 23123 brain Protein similarity
  R40030 cDNA clone IMAGE:27403 brain 3' read 1.2 kb
  R38657 cDNA clone IMAGE:23123 brain 3' read 0.8 kb
  F10567 cDNA clone c3ha05 brain 3' read
  Z39815 cDNA clone c1ka02 brain 3' read
  R13971 cDNA clone IMAGE:27403 brain 5' read 1.2 kbProtein similarity
  T75280 cDNA clone IMAGE:23123 brain 5' read 0.8 kbProtein similarity
  F06758 cDNA clone c1ka02 brain Protein similarity
  F12969 cDNA clone c3ha05 brain Protein similarity