Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.12797
Description:DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16
Best-Of-UniGene (BOU) SequenceNM_003587
Genomic Coordiantes Displayed:Bases 46000 to 74000 of contig Hs6_27211_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.12797.jpeg
Best sense EST/protein match:AV711517 matched ref|XP_042378.1| (XM_042378) DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16 [Homo (E = e-103)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BI836395 cDNA clone IMAGE:5222211 pooled pancreas and spleen 5' read Protein similarity
  BG830183 cDNA clone IMAGE:4906815 epithelioid carcinoma cell line 5' read
  BI765223 cDNA clone IMAGE:5190744 pooled colon, kidney, stomach 5' read
  AI815953 cDNA clone IMAGE:2517631 frontal lobe 5' read
  BI763966 cDNA clone IMAGE:5189962 pooled colon, kidney, stomach 5' read
  BI910420 cDNA clone IMAGE:5217071 leukocyte 5' read
  BF303786 cDNA clone IMAGE:4120433 rhabdomyosarcoma 5' read
  BI518868 cDNA clone IMAGE:5211091 leukocyte 5' read
  AA312102 cDNA clone ATCC:159404 5' read
  BE314653 cDNA clone IMAGE:3509511 neuroblastoma 5' read Protein similarity
  BI092492 cDNA clone IMAGE:4997972 placenta 5' read
  AA488307 cDNA clone IMAGE:897300 kidney 5' read 3.4 kb
  BI915355 cDNA clone IMAGE:5248525 brain 5' read
  AA349249 cDNA clone ATCC:150347 adrenal gland 5' read
  BI837701 cDNA clone IMAGE:5225439 pooled pancreas and spleen 5' read
  BI764214 cDNA clone IMAGE:5186445 pooled colon, kidney, stomach 5' read
  BF668982 cDNA clone IMAGE:4280305 primitive neuroectoderm 5' read
  F31048 cDNA clone s4000102D02 muscle
  AI816043 cDNA clone IMAGE:2517631 frontal lobe 3' read Polyadenylation signal
  AW168224 cDNA clone IMAGE:2632830 uterus 3' read Polyadenylation signal
  F30444 cDNA clone s4000103F06 muscle
  H14576 cDNA clone IMAGE:48429 brain 3' read 1.6 kb
  AI969456 cDNA clone IMAGE:2563095 malignant melanoma, metastatic to lymph node 3' read 1.4 kbPolyadenylation signal
  BG108799 cDNA clone (no-name) retinal pigment epithelium sheets 5' read
  AI816949 cDNA clone IMAGE:2409721 lymph 3' read 0.5 kbPolyadenylation signal
  F17216 cDNA clone NOTAVAIL01740
  AW248002 cDNA clone IMAGE:2820043 small cell carcinoma 3' read Polyadenylation signal
  AI536982 cDNA clone IMAGE:2184756 stomach 3' read 0.7 kb

SENSE ESTs

  BE049374 cDNA clone IMAGE:2834769 pancreas 3' read Protein similarityPolyadenylation signal
  AI922626 cDNA clone IMAGE:2443231 uterus 3' read Protein similarityPolyadenylation signal
  AI433075 cDNA clone IMAGE:2120826 lymph 3' read 3.7 kbProtein similarityPolyadenylation signal
  AI985844 cDNA clone IMAGE:2493822 uterus 3' read 0.8 kb
  BE393203 cDNA clone IMAGE:3626497 endometrium, adenocarcinoma cell line 5' read
  BG678758 cDNA clone IMAGE:4749765 squamous cell carcinoma 5' read Protein similarity
  AA086412 cDNA clone IMAGE:561760 muscle 3' read Protein similarityPolyadenylation signal
  AI434717 cDNA clone IMAGE:2132902 lymph 3' read 1.4 kbProtein similarityPolyadenylation signal
  AW074164 cDNA clone IMAGE:2575721 2 pooled high-grade transitional cell tumors 3' read Protein similarityPolyadenylation signal
  BE348948 cDNA clone IMAGE:3144621 2 pooled wilms' tumors, one primary and one metastatic to 3' read Protein similarityPolyadenylation signal
  AA111831 cDNA clone IMAGE:561760 muscle 5' read Protein similarity
  AA304285 cDNA clone ATCC:115907 aorta 5' read Protein similarity
  AW074453 cDNA clone IMAGE:2582813 moderately differentiated adenocarcinoma 3' read Protein similarityPolyadenylation signal
  AI566593 cDNA clone IMAGE:2224300 pancreas 3' read 4.1 kbProtein similarity
  BF690025 cDNA clone IMAGE:4298666 melanotic melanoma, high mdr (cell line) 3' read Protein similarity
  N98554 cDNA clone IMAGE:310070 3' read 1.2 kbProtein similarity
  AI311526 cDNA clone IMAGE:1915472 kidney 3' read 0.7 kbProtein similarityPolyadenylation signal
  R41287 cDNA clone IMAGE:29239 brain 3' read 1.2 kbProtein similarity
  R41628 cDNA clone IMAGE:29263 brain 3' read 1.3 kbProtein similarityPolyadenylation signal
  BG025440 cDNA clone IMAGE:4363155 lymphoma, cell line 5' read Protein similarity
  AW075339 cDNA clone IMAGE:2574118 juvenile granulosa tumor 3' read Protein similarityPolyadenylation signal
  BG339952 cDNA clone IMAGE:4555989 leiomyosarcoma cell line 5' read Protein similarity
  AA353883 cDNA clone ATCC:154111 5' read Protein similarity
  BG570047 cDNA clone IMAGE:4717852 lung 5' read Protein similarity
  BG767116 cDNA clone IMAGE:4870506 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BF759838 cDNA clone (no-name) colon Protein similarity
  BG027052 cDNA clone IMAGE:4388952 osteosarcoma, cell line 5' read Protein similarity
  BG035364 cDNA clone IMAGE:4413095 adenocarcinoma, cell line 5' read Protein similarity
  BG035192 cDNA clone IMAGE:4413119 adenocarcinoma, cell line 5' read Protein similarity
  W24140 cDNA clone IMAGE:310070 5' read 1.2 kbProtein similarity
  BI259214 cDNA clone IMAGE:5109545 choriocarcinoma 5' read Protein similarity
  AA361855 cDNA clone ATCC:166006 lymph 5' read Protein similarity
  R12893 cDNA clone IMAGE:29239 brain 5' read 1.2 kbProtein similarity
  R15177 cDNA clone IMAGE:29263 brain 5' read 1.3 kbProtein similarity
  BE797974 cDNA clone IMAGE:3938514 small cell carcinoma 5' read Protein similarity
  BG035990 cDNA clone IMAGE:4414224 adenocarcinoma, cell line 5' read Protein similarity
  AV711517 cDNA clone CuAAMC07 adrenal cortico adenoma for cushing's syndrome 5' read Protein similarity
  BI088407 cDNA clone IMAGE:4994209 placenta 5' read Protein similarity
  BG258882 cDNA clone IMAGE:4509782 embryonal carcinoma, cell line 5' read Protein similarity
  BF347817 cDNA clone IMAGE:4158559 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BF725559 cDNA clone bx18a02 iris 5' read Protein similarity
  AL045080 cDNA clone DKFZp434K034 testis 5' read Protein similarity
  BI194072 cDNA clone IMAGE:5089380 epithelioid carcinoma cell line 5' read Protein similarity
  AA337987 cDNA clone ATCC:139753 uterus 5' read Protein similarity
  BE391320 cDNA clone IMAGE:3606180 endometrium, adenocarcinoma cell line 5' read Protein similarity
  AL134956 cDNA clone DKFZp762D0611 melanoma (mewo cell line) 5' read Protein similarity
  BI560450 cDNA clone IMAGE:5297018 testis, cell line 5' read Protein similarity
  BE903373 cDNA clone IMAGE:3959079 choriocarcinoma 5' read Protein similarity
  BI758748 cDNA clone IMAGE:5194442 brain 5' read Protein similarity
  BE732055 cDNA clone IMAGE:3841610 choriocarcinoma 5' read Protein similarity
  BE903650 cDNA clone IMAGE:3957967 choriocarcinoma 5' read Protein similarity
  BI909297 cDNA clone IMAGE:5216247 leukocyte 5' read Protein similarity
  BF206925 cDNA clone IMAGE:4100320 neuroblastoma 5' read Protein similarity
  BE384762 cDNA clone IMAGE:3618066 melanotic melanoma 5' read Protein similarity
  AL121300 cDNA clone DKFZp762L066 melanoma (mewo cell line) 5' read Protein similarity
  BG333901 cDNA clone IMAGE:4576905 melanotic melanoma 5' read Protein similarity
  BF316890 cDNA clone IMAGE:4136069 neuroblastoma 5' read Protein similarity