Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.154762
Description:HIV-1 rev binding protein 2
Best-Of-UniGene (BOU) SequenceNM_007043
Genomic Coordiantes Displayed:Bases 89000 to 96000 of contig Hs12_9613_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.154762.jpeg
Best sense EST/protein match:AU117301 matched ref|NP_008974.1| (NM_007043) HIV-1 rev binding protein 2; Rev interacting protein (E = e-143)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BE767352 cDNA clone (no-name) nervous_tumor
  BE767355 cDNA clone (no-name) nervous_tumor
  AI608602 cDNA clone IMAGE:2266589 normal gingiva (cell line from primary keratinocytes) 3' read 1.8 kb
  AW339555 cDNA clone IMAGE:2918965 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read
  AA599948 cDNA clone IMAGE:1090523 bone 3' read 1.8 kb
  N98760 cDNA clone IMAGE:310347 3' read 1.7 kb
  AI874150 cDNA clone IMAGE:2439123 uterus 3' read 2.1 kbPolyadenylation signal
  AA374904 cDNA clone ATCC:179314 5' read
  C16490 cDNA clone GEN331B08 aorta 5' read
  BG169638 cDNA clone IMAGE:4427568 hypernephroma, cell line 5' read
  BE887388 cDNA clone IMAGE:3911117 leiomyosarcoma 5' read
  AV682744 cDNA clone GKBAKB11 hepatocellular carcinoma 5' read
  D79625 cDNA clone GEN293B06 aorta 5' read
  AI921251 cDNA clone IMAGE:2456075 pancreas 3' read 1.5 kb
  AW512243 cDNA clone IMAGE:2805611 uterus 3' read
  AV681630 cDNA clone GKBAKF04 hepatocellular carcinoma 5' read Protein similarity
  AW339082 cDNA clone IMAGE:2878101 pancreas 3' read
  AW340813 cDNA clone IMAGE:2878125 pancreas 3' read
  AV682252 cDNA clone GKBAKE04 hepatocellular carcinoma 5' read Protein similarity
  AW275251 cDNA clone IMAGE:2824650 three pooled meningiomas 3' read Polyadenylation signal
  BG752423 cDNA clone IMAGE:4874427 normal pigmented retinal epithelium 5' read
  BG751038 cDNA clone IMAGE:4873351 normal pigmented retinal epithelium 5' read
  AV712828 cDNA clone DCABAD09 5' read
  W52272 cDNA clone IMAGE:325365 5' read 1.5 kb
  BG678900 cDNA clone IMAGE:4749864 squamous cell carcinoma 5' read
  AA373312 cDNA clone ATCC:177674 5' read
  AW263309 cDNA clone IMAGE:2757643 three pooled meningiomas 3' read Polyadenylation signal
  W52273 cDNA clone IMAGE:325365 3' read 1.5 kbPolyadenylation signal
  AI148275 cDNA clone IMAGE:1680578 3' read 0.7 kbPolyadenylation signal
  AA902949 cDNA clone IMAGE:1516767 smooth muscle 3' read 1.0 kbPolyadenylation signal
  BG282853 cDNA clone IMAGE:4518231 adenocarcinoma, cell line 5' read
  AU159420 cDNA clone THYRO1001615 thyroid gland 3' read Polyadenylation signal
  BG258175 cDNA clone IMAGE:4510122 embryonal carcinoma, cell line 5' read Protein similarity
  AI086682 cDNA clone IMAGE:1679443 3' read 1.0 kbPolyadenylation signal
  AI699851 cDNA clone IMAGE:2288307 uterus 3' read 1.4 kbPolyadenylation signal
  AI679612 cDNA clone IMAGE:2256881 stomach 3' read 1.7 kbPolyadenylation signal
  AW571614 cDNA clone IMAGE:2839386 uterus 3' read Polyadenylation signal
  AI753081 cDNA clone HBMSC_cr04g10 bone 3' read Polyadenylation signal
  AI753128 cDNA clone HBMSC_cr05f03 bone 3' read Protein similarityPolyadenylation signal

SENSE ESTs

  BI966126 cDNA clone (no-name) islets of langerhans 5' read
  BG675368 cDNA clone IMAGE:4755235 skin 5' read Protein similarity
  BF796618 cDNA clone IMAGE:4343163 lymphoma, cell line 5' read Protein similarity
  BM021971 cDNA clone (no-name) islets of langerhans 5' read
  AA640961 cDNA clone IMAGE:1173561 prostate 3' read Polyadenylation signal
  BF665176 cDNA clone IMAGE:4281190 primitive neuroectoderm 5' read
  AA878648 cDNA clone IMAGE:1492881 kidney 3' read 0.6 kbPolyadenylation signal
  BI495430 cDNA clone IMAGE:2539705 ear 5' read
  BE893936 cDNA clone IMAGE:3922658 melanotic melanoma 5' read
  BF030073 cDNA clone IMAGE:3827077 hypernephroma 5' read
  BI090572 cDNA clone IMAGE:4997227 placenta 5' read
  BE884924 cDNA clone IMAGE:3908271 leiomyosarcoma 5' read
  BF211927 cDNA clone IMAGE:4047577 from chronic myelogenous leukemia 5' read
  BI086895 cDNA clone IMAGE:4991884 placenta 5' read
  AW192333 cDNA clone IMAGE:2677534 pancreas 3' read Protein similarityPolyadenylation signal
  AW514342 cDNA clone IMAGE:2915381 two pooled squamous cell carcinomas 3' read Protein similarity
  BG565231 cDNA clone IMAGE:4711415 liver 5' read Protein similarity
  AW468526 cDNA clone IMAGE:2921402 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read Protein similarity
  AW051058 cDNA clone IMAGE:2557353 uterus 3' read Polyadenylation signal
  AI625124 cDNA clone IMAGE:2231728 uterus 3' read 1.4 kb
  AW085817 cDNA clone IMAGE:2588507 esophagus 3' read Protein similarity
  AW873014 cDNA clone IMAGE:3120016 neuroblastoma 3' read
  BE895369 cDNA clone IMAGE:3920095 melanotic melanoma 5' read Protein similarity
  BE907240 cDNA clone IMAGE:3902504 epithelioid carcinoma 5' read Protein similarity
  BI088501 cDNA clone IMAGE:4994214 placenta 5' read Protein similarity
  AI949199 cDNA clone IMAGE:2471816 stomach 3' read 1.1 kb
  AA583831 cDNA clone IMAGE:1088607 larynx 3' read 0.5 kbProtein similarity
  BF210189 cDNA clone IMAGE:4097642 from chronic myelogenous leukemia 5' read
  AI986171 cDNA clone IMAGE:2562740 malignant melanoma, metastatic to lymph node 3' read 1.7 kbProtein similarity
  BF693977 cDNA clone IMAGE:4246718 muscle (skeletal) 5' read Protein similarity
  BI910949 cDNA clone IMAGE:5218093 leukocyte 5' read Protein similarity
  BI260534 cDNA clone IMAGE:5108824 choriocarcinoma 5' read Protein similarity
  BG475674 cDNA clone IMAGE:4639327 melanotic melanoma 5' read Protein similarity
  BG531011 cDNA clone IMAGE:4698789 embryonal carcinoma 5' read Protein similarity
  BG531221 cDNA clone IMAGE:4699331 embryonal carcinoma 5' read Protein similarity
  BI088206 cDNA clone IMAGE:4992949 placenta 5' read Protein similarity
  BE542275 cDNA clone IMAGE:3453483 placenta 5' read Protein similarity
  BF576762 cDNA clone IMAGE:4288884 muscle (skeletal) 5' read Protein similarity
  BG779209 cDNA clone IMAGE:4806951 adenocarcinoma 5' read Protein similarity
  AU117301 cDNA clone HEMBA1001101 whole embryo, mainly head 5' read Protein similarity
  BG721612 cDNA clone IMAGE:4827704 testis, cell line 5' read Protein similarity
  BF697945 cDNA clone IMAGE:4286694 primitive neuroectoderm 5' read Protein similarity
  BE618457 cDNA clone IMAGE:3866323 retinoblastoma 5' read Protein similarity
  BE618678 cDNA clone IMAGE:3866323 retinoblastoma 3' read Protein similarity
  BI761053 cDNA clone IMAGE:5188823 pooled colon, kidney, stomach 5' read Protein similarity
  BG534517 cDNA clone IMAGE:4663358 lung 5' read Protein similarity
  BG535294 cDNA clone IMAGE:4687688 lung 5' read Protein similarity
  BE873625 cDNA clone IMAGE:3853875 adenocarcinoma 5' read Protein similarity
  BG400925 cDNA clone IMAGE:4593255 kidney 5' read Protein similarity
  BE380146 cDNA clone IMAGE:3510860 carcinoma, cell line 5' read Protein similarity
  BE385926 cDNA clone IMAGE:3617478 melanotic melanoma 5' read Protein similarity
  BI094152 cDNA clone IMAGE:4998893 placenta 5' read Protein similarity
  BI463912 cDNA clone IMAGE:5268517 testis, cell line 5' read Protein similarity
  BE386739 cDNA clone IMAGE:3616126 melanotic melanoma 5' read Protein similarity
  BE866609 cDNA clone IMAGE:3961921 carcinoma, cell line 5' read Protein similarity
  BF215888 cDNA clone IMAGE:4093781 glioblastoma 5' read Protein similarity
  BF239727 cDNA clone IMAGE:4134221 from chronic myelogenous leukemia 5' read Protein similarity
  BF694625 cDNA clone IMAGE:4245974 muscle (skeletal) 5' read Protein similarity
  BF696629 cDNA clone IMAGE:4281513 primitive neuroectoderm 5' read Protein similarity
  BF966158 cDNA clone IMAGE:4375283 hippocampus, cell line 5' read Protein similarity
  BF972132 cDNA clone IMAGE:4329064 leiomyosarcoma cell line 5' read Protein similarity
  AA471137 cDNA clone (no-name) 5' read Protein similarity
  BG496602 cDNA clone IMAGE:4659009 mucoepidermoid carcinoma 5' read Protein similarity
  BF207505 cDNA clone IMAGE:4081744 carcinoma, cell line 5' read Protein similarity
  BE565387 cDNA clone IMAGE:3685682 carcinoma, cell line 5' read Protein similarity
  BF132801 cDNA clone IMAGE:4102015 mucoepidermoid carcinoma 5' read Protein similarity
  BE870665 cDNA clone IMAGE:3851734 adenocarcinoma 5' read Protein similarity
  BF541392 cDNA clone IMAGE:4068193 hypernephroma 5' read Protein similarity
  BG534325 cDNA clone IMAGE:4663381 lung 5' read Protein similarity
  BE380075 cDNA clone IMAGE:3511055 carcinoma, cell line 5' read Protein similarity
  BG539470 cDNA clone IMAGE:4692551 lung 5' read Protein similarity
  BF665798 cDNA clone IMAGE:4281393 primitive neuroectoderm 5' read Protein similarity
  BG720943 cDNA clone IMAGE:4825080 testis, cell line 5' read Protein similarity
  BE734833 cDNA clone IMAGE:3844928 choriocarcinoma 5' read Protein similarity
  BI465238 cDNA clone IMAGE:5270505 testis, cell line 5' read Protein similarity
  AA315794 cDNA clone ATCC:111514 5' read Protein similarity
  BI551949 cDNA clone IMAGE:5274616 hippocampus, cell line 5' read Protein similarity
  BF028421 cDNA clone IMAGE:3996076 carcinoma, cell line 5' read Protein similarity
  BF696831 cDNA clone IMAGE:4282360 primitive neuroectoderm 5' read Protein similarity
  BI459561 cDNA clone IMAGE:5266458 testis, cell line 5' read Protein similarity
  AL038119 cDNA clone DKFZp566O231 kidney 5' read Protein similarity
  N87893 cDNA clone K0623 heart 5' read Protein similarity