Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.198037
Description:KIAA0599 protein
Best-Of-UniGene (BOU) SequenceAB011171
Genomic Coordiantes Displayed:Bases 1012423 to 1040682 of contig Hs14_26048_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.198037.jpeg
Best sense EST/protein match:BE792864 matched pir||T00267 hypothetical protein KIAA0599 - human (fragment) (E = e-106)
Best antisense EST/protein match:AJ346592 matched gb|AAH10434.1|AAH10434 (BC010434) Unknown (protein for MGC:15955) [Homo sapiens] (E = 3e-26)

This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

  BG223341 cDNA clone IMAGE:4170365 glioblastoma with probably tp53 mutation and without egfr 3' read Polyadenylation signal
  R60540 cDNA clone IMAGE:43170 brain 3' read Polyadenylation signal
  Z38361 cDNA clone c08f04 brain 3' read Polyadenylation signal
  AJ346592 cDNA clone (no-name) pectoral muscle (after mastectomy)