Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.20225
Description:tuftelin-interacting protein
Best-Of-UniGene (BOU) SequenceNM_012143
Genomic Coordiantes Displayed:Bases 6080000 to 6220000 of contig Hs22_11677_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.20225.jpeg
Best sense EST/protein match:AL045582 matched ref|NP_036275.1| (NM_012143) tuftelin-interacting protein; similar to (E = e-119)
Best antisense EST/protein match:BE792125 matched emb|CAB62929.1| (Z99714) bK1048E9.3 (novel protein) [Homo sapiens] (E = e-109)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BG336373 cDNA clone IMAGE:4542722 choriocarcinoma 5' read
  BG763699 cDNA clone IMAGE:4861277 melanotic melanoma, high mdr (cell line) 5' read
  BE280171 cDNA clone IMAGE:3504882 choriocarcinoma 5' read Protein similarity
  BG769890 cDNA clone IMAGE:4877820 melanotic melanoma, high mdr (cell line) 5' read
  BG530539 cDNA clone IMAGE:4697860 embryonal carcinoma 5' read
  BG705243 cDNA clone IMAGE:4820477 hippocampus, cell line 5' read
  BG703008 cDNA clone IMAGE:4818314 hippocampus, cell line 5' read
  BE906899 cDNA clone IMAGE:3900190 epithelioid carcinoma 5' read
  BE893834 cDNA clone IMAGE:3920974 melanotic melanoma 5' read
  BE792125 cDNA clone IMAGE:3936215 small cell carcinoma 5' read
  BE891468 cDNA clone IMAGE:3920168 melanotic melanoma 5' read
  BG618064 cDNA clone IMAGE:4766821 liver 5' read Protein similarity
  AA247940 cDNA clone (no-name) heart 5' read Protein similarity
  AA385849 cDNA clone ATCC:190102 thyroid 5' read Protein similarity
  BF571186 cDNA clone IMAGE:4252745 melanotic melanoma, high mdr 5' read
  W90315 cDNA clone IMAGE:418038 pool 5' read 1.0 kbProtein similarity
  BG437131 cDNA clone IMAGE:4620594 large cell carcinoma 5' read Protein similarity
  BG764419 cDNA clone IMAGE:4861904 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BF793348 cDNA clone IMAGE:4346897 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BG029339 cDNA clone IMAGE:4387315 osteosarcoma, cell line 5' read Protein similarity
  F37834 cDNA clone NOTAVAIL06900 muscle Protein similarity
  AA310430 cDNA clone ATCC:156529 5' read Protein similarity
  W90531 cDNA clone IMAGE:418038 pool 3' read 1.0 kb
  BE349040 cDNA clone IMAGE:3149972 malignant melanoma, metastatic to lymph node 3' read Protein similarity
  BG390205 cDNA clone IMAGE:4524152 embryonal carcinoma, cell line 5' read Protein similarity
  H05385 cDNA clone IMAGE:44118 brain 5' read
  AA324120 cDNA clone ATCC:124875 brain 5' read
  AA303652 cDNA clone ATCC:115245 aorta 5' read
  BF978851 cDNA clone IMAGE:4308289 melanotic melanoma, high mdr 5' read
  BF977745 cDNA clone IMAGE:4307320 melanotic melanoma, high mdr 5' read
  BF571101 cDNA clone IMAGE:4252405 melanotic melanoma, high mdr 5' read
  BF691567 cDNA clone IMAGE:4333668 melanotic melanoma, high mdr 5' read
  BF571294 cDNA clone IMAGE:4252060 melanotic melanoma, high mdr 5' read
  AA702583 cDNA clone IMAGE:447466 pool 3' read Polyadenylation signal
  H05386 cDNA clone IMAGE:44118 brain 3' read Polyadenylation signal
  BF571338 cDNA clone IMAGE:4252074 melanotic melanoma, high mdr 5' read Protein similarity
  AW518865 cDNA clone IMAGE:2876643 pancreas 3' read Protein similarityPolyadenylation signal
  BG231758 cDNA clone IMAGE:4143584 lymphocyte 3' read Protein similarityPolyadenylation signal
  AA676626 cDNA clone IMAGE:454978 pool 3' read Protein similarityPolyadenylation signal
  AI081958 cDNA clone IMAGE:1681789 3' read 1.1 kbPolyadenylation signal

SENSE ESTs

  AL045583 cDNA clone DKFZp434N015 testis 3' read Protein similarityPolyadenylation signal
  AI932520 cDNA clone IMAGE:2454248 pancreas 3' read 0.7 kbProtein similarityPolyadenylation signal
  BI088107 cDNA clone IMAGE:4992246 placenta 5' read
  AW473872 cDNA clone IMAGE:2882762 uterus 3' read Protein similarityPolyadenylation signal
  AI857854 cDNA clone IMAGE:2425728 uterus 3' read 0.6 kbProtein similarityPolyadenylation signal
  AW959118 cDNA clone (no-name) Protein similarity
  BF718270 cDNA clone S81204.NIH46-R epidermis 3' read Protein similarityPolyadenylation signal
  BF718618 cDNA clone S90413.NIH129-R.ab1 epidermis 3' read Protein similarityPolyadenylation signal
  AI023671 cDNA clone IMAGE:1651921 pool 3' read 1.3 kbProtein similarityPolyadenylation signal
  AI453796 cDNA clone IMAGE:2142908 stomach 3' read 1.9 kbProtein similarityPolyadenylation signal
  AI358316 cDNA clone IMAGE:1989519 uterus 3' read 3.0 kbProtein similarityPolyadenylation signal
  AI288035 cDNA clone IMAGE:1980234 kidney 3' read 1.1 kbProtein similarityPolyadenylation signal
  BF698393 cDNA clone IMAGE:4287352 primitive neuroectoderm 5' read Protein similarity
  H17931 cDNA clone IMAGE:50849 brain 3' read 3.6 kbProtein similarityPolyadenylation signal
  AL045582 cDNA clone DKFZp434N015 testis 5' read Protein similarity
  AI744272 cDNA clone IMAGE:2217742 ovary 3' read Protein similarityPolyadenylation signal
  AL041423 cDNA clone DKFZp434D1217 testis 3' read Protein similarityPolyadenylation signal
  AA310510 cDNA clone ATCC:156604 5' read Protein similarity
  BM041842 cDNA clone IMAGE:5556573 wilms' tumor, cell line 3' read
  BF690100 cDNA clone IMAGE:4298429 melanotic melanoma, high mdr (cell line) 3' read Protein similarity
  AA334682 cDNA clone ATCC:136603 whole embryo 5' read Protein similarity
  BG236124 cDNA clone IMAGE:4141715 lymphocyte 3' read Protein similarityPolyadenylation signal
  AW275287 cDNA clone IMAGE:2824762 three pooled meningiomas 3' read Protein similarityPolyadenylation signal
  AA976336 cDNA clone IMAGE:1589577 kidney 3' read 2.1 kbProtein similarityPolyadenylation signal
  AL040566 cDNA clone DKFZp434J1714 testis 5' read Protein similarity
  BE741326 cDNA clone IMAGE:3947968 adenocarcinoma cell line 5' read Protein similarity
  BG281120 cDNA clone IMAGE:4544019 melanotic melanoma 5' read Protein similarity
  BF689871 cDNA clone IMAGE:4298429 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BE388563 cDNA clone IMAGE:3604068 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BE277249 cDNA clone IMAGE:3051102 melanotic melanoma 5' read Protein similarity
  BE728674 cDNA clone IMAGE:3833607 melanotic melanoma 5' read Protein similarity
  BE388921 cDNA clone IMAGE:3604588 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BE304486 cDNA clone IMAGE:2988059 adenocarcinoma cell line 5' read Protein similarity
  BF025877 cDNA clone IMAGE:3952955 melanotic melanoma 5' read Protein similarity
  BE391511 cDNA clone IMAGE:3606848 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BE389753 cDNA clone IMAGE:3604660 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BF027410 cDNA clone IMAGE:3955259 melanotic melanoma 5' read Protein similarity
  BF246066 cDNA clone IMAGE:4073811 glioblastoma 5' read Protein similarity
  R18799 cDNA clone IMAGE:32959 brain 5' read 2.3 kbProtein similarity
  BE273607 cDNA clone IMAGE:3506709 renal cell adenocarcinoma 5' read Protein similarity
  BE311431 cDNA clone IMAGE:3506099 renal cell adenocarcinoma 5' read Protein similarity
  BG469648 cDNA clone IMAGE:4661929 adenocarcinoma cell line 5' read Protein similarity
  BE279146 cDNA clone IMAGE:3140015 choriocarcinoma 5' read Protein similarity
  BE729576 cDNA clone IMAGE:3926106 melanotic melanoma 5' read Protein similarity
  BE292803 cDNA clone IMAGE:2988036 adenocarcinoma cell line 5' read Protein similarity
  BE385340 cDNA clone IMAGE:3618229 melanotic melanoma 5' read Protein similarity
  BI767205 cDNA clone IMAGE:5209845 pooled lung and spleen 5' read Protein similarity
  BG722691 cDNA clone IMAGE:4826953 testis, cell line 5' read Protein similarity
  BG422037 cDNA clone IMAGE:4587344 renal cell adenocarcinoma 5' read Protein similarity
  BG422926 cDNA clone IMAGE:4588656 renal cell adenocarcinoma 5' read Protein similarity
  BE893131 cDNA clone IMAGE:3922206 melanotic melanoma 5' read Protein similarity
  BG771480 cDNA clone IMAGE:4836839 testis, cell line 5' read Protein similarity
  BE277189 cDNA clone IMAGE:3051032 melanotic melanoma 5' read Protein similarity
  BG760666 cDNA clone IMAGE:4840615 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  AL041422 cDNA clone DKFZp434D1217 testis 5' read Protein similarity
  BG323244 cDNA clone IMAGE:4559846 renal cell adenocarcinoma 5' read Protein similarity
  BG389599 cDNA clone IMAGE:4522687 embryonal carcinoma, cell line 5' read Protein similarity
  AL045018 cDNA clone DKFZp434F214 testis 5' read Protein similarity
  BG420052 cDNA clone IMAGE:4592072 renal cell adenocarcinoma 5' read
  AL039939 cDNA clone DKFZp434I2312 testis 5' read
  AU098977 cDNA clone HEP10693 Protein similarity