Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.2210
Description:thyroid hormone receptor interactor 3
Best-Of-UniGene (BOU) SequenceAL133017
Genomic Coordiantes Displayed:Bases 766778 to 800709 of contig Hs17_10952_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.2210.jpeg
Best sense EST/protein match:AL133017 matched gb|AAH08900.1|AAH08900 (BC008900) hypothetical protein FLJ22865 [Homo sapiens] (E = e-175)
Best antisense EST/protein match:AI878991 matched ref|XP_058858.1| (XM_058858) thyroid hormone receptor interactor 3 [Homo sapiens] (E = 5e-87)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BG105424 cDNA clone IMAGE:4422618 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BF029341 cDNA clone IMAGE:3997458 carcinoma, cell line 5' read Protein similarity
  BF206804 cDNA clone IMAGE:4101766 neuroblastoma 5' read Protein similarity
  BG105225 cDNA clone IMAGE:4422595 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BG032116 cDNA clone IMAGE:4394171 mammary adenocarcinoma, cell line 5' read Protein similarity
  W85774 cDNA clone IMAGE:416081 pool 5' read 0.8 kbProtein similarity
  BM128035 cDNA clone (no-name) islets of langerhans 5' read
  BE567124 cDNA clone IMAGE:3683495 carcinoma, cell line 5' read Protein similarity
  BF244329 cDNA clone IMAGE:4080764 glioblastoma 5' read Protein similarity
  BM127987 cDNA clone (no-name) islets of langerhans 5' read
  BI914689 cDNA clone IMAGE:5243739 brain 5' read Protein similarity
  AA216123 cDNA clone (no-name) heart 5' read Protein similarity
  AU121818 cDNA clone MAMMA1001036 mammary gland 5' read Protein similarity
  AA356378 cDNA clone ATCC:158515 5' read Protein similarity
  BI862413 cDNA clone IMAGE:5406437 mammary adenocarcinoma, cell line 5' read Protein similarity
  BI767446 cDNA clone IMAGE:5206657 pooled lung and spleen 5' read Protein similarity
  BE728914 cDNA clone IMAGE:3832115 melanotic melanoma 5' read Protein similarity
  AA361402 cDNA clone ATCC:165569 lymph 5' read Protein similarity
  BF038896 cDNA clone IMAGE:3865084 adenocarcinoma 5' read Protein similarity
  AV682409 cDNA clone GKBACC01 hepatocellular carcinoma 5' read Protein similarity
  BI754761 cDNA clone IMAGE:5195853 brain 5' read Protein similarity
  AA365130 cDNA clone ATCC:169854 brain 5' read Protein similarity
  BE260293 cDNA clone IMAGE:3503712 neuroblastoma 5' read Protein similarity
  AV682817 cDNA clone GKBAFC11 hepatocellular carcinoma 5' read Protein similarity
  BI598307 cDNA clone IMAGE:5287751 hypothalamus, cell line 5' read Protein similarity
  BI559922 cDNA clone IMAGE:5295330 testis, cell line 5' read Protein similarity
  BE264535 cDNA clone IMAGE:3536876 small cell carcinoma 5' read Protein similarity
  AA382938 cDNA clone ATCC:187170 testis 5' read Protein similarity
  BI549989 cDNA clone IMAGE:5264003 hippocampus, cell line 5' read Protein similarity
  BI438342 cDNA clone (no-name) purified pancreatic islet 5' read Protein similarity
  BI253498 cDNA clone IMAGE:5112589 choriocarcinoma 5' read Protein similarity
  BI225607 cDNA clone IMAGE:5093550 burkitt lymphoma 5' read Protein similarity
  BE302780 cDNA clone IMAGE:2906253 melanotic melanoma 5' read Protein similarity
  BI223359 cDNA clone IMAGE:5105910 choriocarcinoma 5' read Protein similarity
  AV716210 cDNA clone DCBCDH05 5' read Protein similarity
  BI198394 cDNA clone IMAGE:4896965 neuroblastoma 5' read Protein similarity
  BI196498 cDNA clone IMAGE:4891152 neuroblastoma 5' read Protein similarity
  BE866681 cDNA clone IMAGE:3961653 carcinoma, cell line 5' read Protein similarity
  BE378194 cDNA clone IMAGE:3609975 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BF125867 cDNA clone IMAGE:4025875 melanotic melanoma 5' read Protein similarity
  AV726907 cDNA clone HTCCEC03 hypothalamus 5' read Protein similarity
  BG913516 cDNA clone IMAGE:4943223 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BG913512 cDNA clone IMAGE:4943365 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BG719558 cDNA clone IMAGE:4822301 testis, cell line 5' read Protein similarity
  BE409038 cDNA clone IMAGE:3637699 choriocarcinoma 5' read Protein similarity
  BG717533 cDNA clone IMAGE:4821669 testis, cell line 5' read Protein similarity
  AV763423 cDNA clone MDSAJA07 bone marrow 5' read Protein similarity
  BG701193 cDNA clone IMAGE:4813610 hippocampus, cell line 5' read Protein similarity
  AI878991 cDNA clone IMAGE:2518449 frontal lobe 5' read Protein similarity
  BG700573 cDNA clone IMAGE:4813633 hippocampus, cell line 5' read Protein similarity
  BE971435 cDNA clone IMAGE:3934782 muscle (skeletal) 5' read Protein similarity
  AV763441 cDNA clone MDSAJA11 bone marrow 5' read Protein similarity
  BF207021 cDNA clone IMAGE:4100878 neuroblastoma 5' read Protein similarity
  BE513647 cDNA clone IMAGE:3634813 burkitt lymphoma 5' read Protein similarity
  BG500634 cDNA clone IMAGE:4669658 adenocarcinoma 5' read Protein similarity
  BG429500 cDNA clone IMAGE:4615524 kidney 5' read Protein similarity
  BG337224 cDNA clone IMAGE:4552737 leiomyosarcoma cell line 5' read Protein similarity
  BE535275 cDNA clone IMAGE:3445394 placenta 5' read Protein similarity
  AL040958 cDNA clone DKFZp434L1515 testis 5' read Protein similarity
  BI829706 cDNA clone IMAGE:5171441 medulla 5' read Protein similarity
  BG285215 cDNA clone IMAGE:4539487 adenocarcinoma, cell line 5' read Protein similarity
  BF793758 cDNA clone IMAGE:4346640 adrenal cortex carcinoma, cell line 5' read Protein similarityPolyadenylation signal
  AW190826 cDNA clone IMAGE:2677346 pancreas 3' read Protein similarity
  AW467213 cDNA clone IMAGE:2918313 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read Protein similarityPolyadenylation signal
  AI308866 cDNA clone IMAGE:1914633 kidney 3' read 0.7 kbPolyadenylation signal
  AI879491 cDNA clone IMAGE:2518449 frontal lobe 3' read Protein similarity
  AW572013 cDNA clone IMAGE:2850679 lymph 3' read Polyadenylation signal
  W85935 cDNA clone IMAGE:416081 pool 3' read 0.8 kbPolyadenylation signal
  AW439077 cDNA clone IMAGE:2778579 uterus 3' read Polyadenylation signal
  BE253046 cDNA clone IMAGE:3357229 retinoblastoma 5' read Protein similarity
  BE973762 cDNA clone IMAGE:3950871 prostate 5' read Protein similarity
  BI467271 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarityPolyadenylation signal
  AI033835 cDNA clone IMAGE:1656517 pool 3' read 0.4 kbPolyadenylation signal
  AA382937 cDNA clone ATCC:187170 testis 3' read Polyadenylation signal
  AW084656 cDNA clone IMAGE:2569793 five pooled sarcomas, including myxoid liposarcoma, solitary 3' read Protein similarityPolyadenylation signal
  AI680152 cDNA clone IMAGE:2264565 uterus 3' read Polyadenylation signal
  BE221669 cDNA clone IMAGE:3171294 malignant melanoma, metastatic to lymph node 3' read Polyadenylation signal
  AI689585 cDNA clone IMAGE:2276301 uterus 3' read 2.7 kb
  AW591791 cDNA clone IMAGE:2850420 lymph 3' read Polyadenylation signal
  AI566458 cDNA clone IMAGE:2222669 pancreas 3' read 0.8 kbPolyadenylation signal
  BM127738 cDNA clone (no-name) islets of langerhans 3' read Polyadenylation signal
  BM127770 cDNA clone (no-name) islets of langerhans 3' read Polyadenylation signal
  AW474952 cDNA clone IMAGE:2881935 stomach 3' read Protein similarityPolyadenylation signal
  BE207565 cDNA clone IMAGE:2906253 melanotic melanoma 3' read Polyadenylation signal
  AV692343 cDNA clone GKCDNG03 hepatocellular carcinoma 5' read
  AA989438 cDNA clone IMAGE:1606213 kidney 3' read 0.5 kb
  F07754 cDNA clone c2gg10 brain
  Z43294 cDNA clone c18d04 brain
  Z40838 cDNA clone c2gg10 brain 3' read Polyadenylation signal
  F02724 cDNA clone c18d04 brain 3' read Polyadenylation signal

SENSE ESTs

  H15805 cDNA clone IMAGE:48713 brain 3' read 2.2 kb
  AA004273 cDNA clone IMAGE:429241 pool 3' read Polyadenylation signal
  BE901223 cDNA clone IMAGE:3958571 choriocarcinoma 5' read Polyadenylation signal
  AI302293 cDNA clone IMAGE:1902934 kidney 3' read 0.6 kb
  AA677972 cDNA clone IMAGE:430760 pool 3' read
  AV709284 cDNA clone ADCAIF06 adrenal gland 5' read Polyadenylation signal
  AA977374 cDNA clone IMAGE:1588957 kidney 3' read 0.8 kb
  AI540615 cDNA clone IMAGE:2176617 uterus 3' read 2.6 kbPolyadenylation signal
  AA552691 cDNA clone IMAGE:1013614 colon 3' read 1.6 kb
  AA888152 cDNA clone IMAGE:1492116 kidney 3' read 0.6 kb
  AA938635 cDNA clone IMAGE:1574064 kidney 3' read 1.6 kb
  AI867088 cDNA clone IMAGE:2291000 tumor, 5 pooled (see description) 3' read 1.4 kb
  AI347827 cDNA clone IMAGE:1916897 kidney 3' read 0.6 kb
  AA158737 cDNA clone IMAGE:591531 3' read 2.3 kb
  AW074429 cDNA clone IMAGE:2574315 juvenile granulosa tumor 3' read Polyadenylation signal
  AA641286 cDNA clone IMAGE:1174077 prostate 3' read
  AW005609 cDNA clone IMAGE:2565025 stomach 3' read 1.9 kbPolyadenylation signal
  AW005600 cDNA clone IMAGE:2565026 stomach 3' read 0.8 kbPolyadenylation signal
  AW028389 cDNA clone IMAGE:2541244 stomach 3' read 2.4 kbPolyadenylation signal
  BE465496 cDNA clone IMAGE:3151671 malignant melanoma, metastatic to lymph node 3' read Polyadenylation signal
  BI085866 cDNA clone IMAGE:5013631 astrocytoma grade iv, cell line 3' read
  BE621607 cDNA clone IMAGE:3895644 epithelioid carcinoma 3' read
  BG677412 cDNA clone IMAGE:4750185 squamous cell carcinoma 5' read
  BI223377 cDNA clone IMAGE:5105916 choriocarcinoma 5' read
  BG678768 cDNA clone IMAGE:4749959 squamous cell carcinoma 5' read
  BI837872 cDNA clone IMAGE:5222828 pooled pancreas and spleen 5' read
  AA007287 cDNA clone IMAGE:429241 pool 5' read
  BE871805 cDNA clone IMAGE:3852523 adenocarcinoma 5' read
  BG576305 cDNA clone IMAGE:4706090 mammary adenocarcinoma, cell line 5' read
  BG744691 cDNA clone IMAGE:4849391 natural killer cells, cell line 3' read
  BE730520 cDNA clone IMAGE:3844730 choriocarcinoma 5' read
  BE548809 cDNA clone IMAGE:3457949 choriocarcinoma 5' read
  BE789285 cDNA clone IMAGE:3883861 large cell carcinoma 5' read
  BE548314 cDNA clone IMAGE:3461311 choriocarcinoma 5' read
  BE788550 cDNA clone IMAGE:3878854 large cell carcinoma 5' read
  BE047638 cDNA clone IMAGE:2291000 tumor, 5 pooled (see description) 5' read 1.4 kb
  BG819037 cDNA clone IMAGE:4932024 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BG676852 cDNA clone IMAGE:4748676 squamous cell carcinoma 5' read
  BM020622 cDNA clone IMAGE:5419033 astrocytoma grade iv, cell line 5' read Protein similarity
  BI758724 cDNA clone IMAGE:5194570 brain 5' read
  BF968765 cDNA clone IMAGE:4358464 adrenal cortex carcinoma, cell line 5' read Protein similarity
  AA159854 cDNA clone IMAGE:591531 5' read 2.3 kbProtein similarity
  BG323524 cDNA clone IMAGE:4560114 renal cell adenocarcinoma 5' read Protein similarity
  AA161059 cDNA clone IMAGE:591520 5' read 2.2 kbProtein similarity
  AA161002 cDNA clone IMAGE:591448 5' read 2.2 kbProtein similarity