Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.250697
Description:ras-like protein
Best-Of-UniGene (BOU) SequenceBC013135
Genomic Coordiantes Displayed:Bases 3388600 to 3487618 of contig Hs2_5222_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.250697.jpeg
Best sense EST/protein match:AV705840 matched ref|NP_036381.1| (NM_012249) ras-like protein [Homo sapiens] (E = e-103)
Best antisense EST/protein match:AU150290 matched ref|NP_002634.1| (NM_002643) phosphatidylinositol glycan, class F [Homo sapiens] (E = 2e-50)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BE253861 cDNA clone IMAGE:3353503 retinoblastoma 5' read Protein similarity
  AU150290 cDNA clone NT2RP2002299 3' read Protein similarityPolyadenylation signal
  W47018 cDNA clone IMAGE:324617 5' read Protein similarity
  AA677620 cDNA clone IMAGE:460276 pool 3' read Protein similarity
  AI683540 cDNA clone IMAGE:2274672 uterus 3' read 1.4 kbProtein similarityPolyadenylation signal
  AI565050 cDNA clone IMAGE:2214992 uterus 3' read 4.4 kbProtein similarityPolyadenylation signal
  AI702054 cDNA clone IMAGE:2209408 uterus 3' read 2.9 kbProtein similarity
  T35681 cDNA clone ATCC:107047 small intestine 5' read
  BI496299 cDNA clone IMAGE:2540135 ear 5' read
  AW337556 cDNA clone IMAGE:2847951 lymph 3' read
  BI496396 cDNA clone IMAGE:2540421 ear 3' read Protein similarityPolyadenylation signal
  AA991913 cDNA clone IMAGE:1611330 germ cell 3' read 1.6 kbPolyadenylation signal
  BI496298 cDNA clone IMAGE:2540135 ear 3' read Protein similarity
  BM052902 cDNA clone (no-name) islets of langerhans 5' read Polyadenylation signal
  AI248810 cDNA clone IMAGE:1849735 pool 3' read Protein similarityPolyadenylation signal
  BE041692 cDNA clone IMAGE:3039251 uterus 3' read Polyadenylation signal
  BI467017 cDNA clone (no-name) purified pancreatic islet 5' read Protein similarity
  BI439807 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarity
  BI324845 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarity

SENSE ESTs

  BF977053 cDNA clone IMAGE:4305999 melanotic melanoma, high mdr 5' read
  AI347721 cDNA clone IMAGE:1916810 kidney 3' read 0.7 kb
  BF978958 cDNA clone IMAGE:4306641 melanotic melanoma, high mdr 5' read
  AA319497 cDNA clone ATCC:120047 adrenal gland 5' read
  BG548794 cDNA clone IMAGE:4704412 lung 5' read
  AI801739 cDNA clone IMAGE:2185982 stomach 3' read 1.0 kbPolyadenylation signal
  AW132081 cDNA clone IMAGE:2613395 uterus 3' read Polyadenylation signal
  D62916 cDNA clone GEN339G04 aorta 5' read
  AI087182 cDNA clone IMAGE:1679677 3' read 1.2 kb
  BF692777 cDNA clone IMAGE:4244440 muscle (skeletal) 5' read
  BG529448 cDNA clone IMAGE:4686940 embryonal carcinoma 5' read
  BF693203 cDNA clone IMAGE:4245470 muscle (skeletal) 5' read
  T25720 cDNA clone CDDIRY66 3' read Polyadenylation signal
  AI824772 cDNA clone IMAGE:2322817 pancreas 3' read 1.4 kb
  AA857506 cDNA clone IMAGE:1475072 head and neck 3' read 1.8 kb
  AI824554 cDNA clone IMAGE:2275057 uterus 3' read 1.2 kb
  BI756613 cDNA clone IMAGE:5199546 brain 5' read
  AA366030 cDNA clone ATCC:170690 brain 5' read
  AA975134 cDNA clone IMAGE:1555913 smooth muscle 3' read 0.6 kb
  W49807 cDNA clone IMAGE:325202 3' read 1.8 kb
  BG654438 cDNA clone (no-name) purified pancreatic islet 3' read
  R45201 cDNA clone IMAGE:35172 brain 3' read 1.5 kbPolyadenylation signal
  AI911861 cDNA clone IMAGE:2324848 pancreas 3' read 0.8 kb
  AA305934 cDNA clone ATCC:160096 5' read
  AI270757 cDNA clone IMAGE:1963959 ovary 3' read 0.9 kb
  BG105769 cDNA clone IMAGE:4422288 adrenal cortex carcinoma, cell line 5' read
  AA703936 cDNA clone IMAGE:1119856 bone 3' read
  AW023680 cDNA clone IMAGE:2487769 ear 5' read
  BG169251 cDNA clone IMAGE:4424294 hypernephroma, cell line 5' read
  AA319786 cDNA clone ATCC:120365 adrenal gland 5' read
  AA094342 cDNA clone (no-name) heart 5' read
  BE894691 cDNA clone IMAGE:3921249 melanotic melanoma 5' read
  BG168869 cDNA clone IMAGE:4415447 hypernephroma, cell line 5' read
  C04078 cDNA clone 3NHC2659 heart
  BE897886 cDNA clone IMAGE:3925214 melanotic melanoma 5' read
  D31543 cDNA clone (no-name) lung 5' read
  AV716499 cDNA clone DCBAKA06 5' read
  AA091296 cDNA clone (no-name) heart 5' read
  BF348067 cDNA clone IMAGE:4158005 anaplastic oligodendroglioma with 1p/19q loss 5' read
  D45259 cDNA clone (no-name) brain
  BG540679 cDNA clone IMAGE:4694940 lung 5' read
  BF240034 cDNA clone IMAGE:4134013 from chronic myelogenous leukemia 5' read
  BF530380 cDNA clone IMAGE:4214613 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BG612916 cDNA clone IMAGE:4771704 embryonal carcinoma 5' read
  W46200 cDNA clone IMAGE:323838 5' read 1.0 kb
  AA329386 cDNA clone ATCC:131186 whole embryo 5' read
  BF575528 cDNA clone IMAGE:4288179 muscle (skeletal) 5' read
  BG570544 cDNA clone IMAGE:4717735 lung 5' read
  BE328391 cDNA clone IMAGE:3144837 2 pooled wilms' tumors, one primary and one metastatic to 3' read
  AI926667 cDNA clone IMAGE:2458680 stomach 3' read
  BE891377 cDNA clone IMAGE:3919783 melanotic melanoma 5' read
  BG031130 cDNA clone IMAGE:4393436 mammary adenocarcinoma, cell line 5' read
  AW027841 cDNA clone IMAGE:2533973 stomach 3' read
  AW080740 cDNA clone IMAGE:2587749 esophagus 3' read
  W52178 cDNA clone IMAGE:325341 3' read 1.1 kb
  AW473986 cDNA clone IMAGE:2883008 uterus 3' read
  AI925678 cDNA clone IMAGE:2457085 stomach 3' read 2.0 kb
  BE046360 cDNA clone IMAGE:3026651 juvenile granulosa tumor 3' read
  AA176436 cDNA clone IMAGE:611613 muscle 3' read 0.5 kb
  AI634356 cDNA clone IMAGE:2232872 kidney 3' read 0.7 kb
  AW148927 cDNA clone IMAGE:2617302 kidney 3' read
  BG620115 cDNA clone IMAGE:4732023 placenta 5' read
  BF670447 cDNA clone IMAGE:4290707 muscle (skeletal) 5' read
  AA370257 cDNA clone ATCC:174761 prostate 5' read
  BF577093 cDNA clone IMAGE:4290497 muscle (skeletal) 5' read
  AI677825 cDNA clone IMAGE:2324983 pancreas 3' read 2.4 kb
  BF340046 cDNA clone IMAGE:4184925 glioblastoma with egfr amplification 5' read
  H89174 cDNA clone IMAGE:253492 ear 5' read 0.7 kb
  BF572827 cDNA clone IMAGE:4243773 melanotic melanoma, high mdr 5' read
  BF213289 cDNA clone IMAGE:4070111 from acute myelogenous leukemia 5' read
  AA089814 cDNA clone (no-name) heart 5' read
  BG427863 cDNA clone IMAGE:4614876 kidney 5' read
  BE787533 cDNA clone IMAGE:3882456 large cell carcinoma 5' read
  AA248615 cDNA clone (no-name) heart 5' read
  BF674910 cDNA clone IMAGE:4273125 prostate 5' read
  BF679753 cDNA clone IMAGE:4295529 prostate 5' read Protein similarity
  AI302975 cDNA clone IMAGE:1901830 kidney 3' read 1.2 kbProtein similarityPolyadenylation signal
  BG655056 cDNA clone (no-name) purified pancreatic islet 5' read Protein similarity
  BE896118 cDNA clone IMAGE:3923833 melanotic melanoma 5' read Protein similarity
  AV707552 cDNA clone ADBADB06 adrenal gland 5' read Protein similarity
  BF242492 cDNA clone IMAGE:4104710 from acute myelogenous leukemia 5' read Protein similarity
  R24938 cDNA clone IMAGE:35172 brain 5' read 1.5 kbProtein similarity
  AI523244 cDNA clone IMAGE:2127977 aorta 3' read Protein similarityPolyadenylation signal
  BF673227 cDNA clone IMAGE:4272280 prostate 5' read Protein similarity
  AL133947 cDNA clone DKFZp761O129 amygdala 5' read Protein similarity
  BG231991 cDNA clone IMAGE:4142907 lymphocyte 3' read Protein similarityPolyadenylation signal
  BF570691 cDNA clone IMAGE:4242835 melanotic melanoma, high mdr 5' read Protein similarity
  AI956122 cDNA clone IMAGE:2509439 pancreas 3' read 0.8 kbProtein similarityPolyadenylation signal
  AA541465 cDNA clone IMAGE:984008 prostate 3' read Protein similarityPolyadenylation signal
  BF978689 cDNA clone IMAGE:4308014 melanotic melanoma, high mdr 5' read Protein similarity
  BG167070 cDNA clone IMAGE:4454773 hypernephroma, cell line 5' read Protein similarity
  BG107816 cDNA clone IMAGE:4365685 osteosarcoma, cell line 5' read Protein similarity
  AA091310 cDNA clone (no-name) heart 5' read
  AU136479 cDNA clone PLACE1004356 placenta 5' read Protein similarity
  AU121947 cDNA clone MAMMA1001332 mammary gland 5' read Protein similarity
  BF978353 cDNA clone IMAGE:4307865 melanotic melanoma, high mdr 5' read Protein similarity
  W52177 cDNA clone IMAGE:325341 5' read 1.1 kbProtein similarity
  BF575979 cDNA clone IMAGE:4288022 muscle (skeletal) 5' read Protein similarity
  AU133408 cDNA clone NT2RP4002005 5' read Protein similarity
  BF338412 cDNA clone IMAGE:4182230 glioblastoma with egfr amplification 5' read Protein similarity
  BI457200 cDNA clone IMAGE:5258081 epithelioid carcinoma cell line 5' read Protein similarity
  AA100143 cDNA clone IMAGE:510901 5' read 1.5 kbProtein similarity
  BF574674 cDNA clone IMAGE:4271604 muscle (skeletal) 5' read Protein similarity
  BG539728 cDNA clone IMAGE:4692311 lung 5' read Protein similarity
  AA313329 cDNA clone ATCC:109476 5' read Protein similarity
  AV705840 cDNA clone ADBBOG12 adrenal gland 5' read Protein similarity
  BI599133 cDNA clone IMAGE:5288460 hypothalamus, cell line 5' read Protein similarity
  BF573737 cDNA clone IMAGE:4251634 melanotic melanoma, high mdr 5' read Protein similarity
  BI856667 cDNA clone IMAGE:5394438 mammary adenocarcinoma, cell line 5' read Protein similarity
  AL599218 cDNA clone DKFZp313H1425 5' read Protein similarity
  AA178883 cDNA clone IMAGE:611709 muscle 5' read 1.7 kbProtein similarity
  AL043108 cDNA clone DKFZp434C0823 testis 5' read Protein similarity
  BG927163 cDNA clone (no-name) cartilage Protein similarity
  W48807 cDNA clone IMAGE:325202 5' read 1.8 kbProtein similarity
  BI601552 cDNA clone IMAGE:5302382 hypothalamus, cell line 5' read Protein similarity
  BG900571 cDNA clone (no-name) cartilage Protein similarity
  BI859015 cDNA clone IMAGE:5396868 mammary adenocarcinoma, cell line 5' read Protein similarity
  BF105047 cDNA clone IMAGE:4042494 kidney 5' read Protein similarity
  BG036924 cDNA clone IMAGE:4375140 hypothalamus, cell line 5' read Protein similarity
  BG707978 cDNA clone IMAGE:4793733 hypothalamus, cell line 5' read Protein similarity
  BG389971 cDNA clone IMAGE:4524079 embryonal carcinoma, cell line 5' read