Report: Hs.250905

Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:	UniGene Cluster Hs.250905
Description:	hypothetical protein
Best-Of-UniGene (BOU) Sequence	AK056019
Genomic Coordiantes Displayed:	Bases 1638558 to 1649685 of contig Hs15_24836_24
BOU Orientation Along Contig:	RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mapping	Hs.250905.jpeg
Best sense EST/protein match:	No protein match with an e-value of less than 1e-10
Best antisense EST/protein match:	BF038947 matched ref\|NP_057538.1\| (NM_016454) hypothetical protein [Homo sapiens] (E = 2e-88)

This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs

AV736888 cDNA clone CBCAMH05 cord blood 5' read Protein similarity

AA172157 cDNA clone IMAGE:610415 5' read

BG423684 cDNA clone IMAGE:4589304 renal cell adenocarcinoma 5' read

BG112272 cDNA clone IMAGE:4370139 osteosarcoma, cell line 5' read

BF694975 cDNA clone IMAGE:4245142 muscle (skeletal) 5' read Protein similarity

AV744681 cDNA clone CBCANA11 cord blood 5' read

BG571042 cDNA clone IMAGE:4714233 placenta 5' read

BI552558 cDNA clone IMAGE:5273778 hippocampus, cell line 5' read

AA315664 cDNA clone ATCC:111386 5' read

BG702822 cDNA clone IMAGE:4817167 hippocampus, cell line 5' read Protein similarity

BF693558 cDNA clone IMAGE:4246335 muscle (skeletal) 5' read

AA318271 cDNA clone ATCC:118752 eye 5' read

BF691494 cDNA clone IMAGE:4332736 melanotic melanoma, high mdr 5' read

BG714819 cDNA clone IMAGE:4799555 hypothalamus, cell line 5' read Protein similarity

BG437399 cDNA clone IMAGE:4622595 large cell carcinoma 5' read

BG180832 cDNA clone IMAGE:4428905 adenocarcinoma, cell line 5' read

AW673568 cDNA clone IMAGE:2900467 placenta 5' read

BE782447 cDNA clone IMAGE:3870713 retinoblastoma 5' read Protein similarity

AA357562 cDNA clone ATCC:161889 prostate 5' read

BF038947 cDNA clone IMAGE:3865028 adenocarcinoma 5' read

BI458395 cDNA clone IMAGE:5278145 hypothalamus, cell line 5' read

BF035976 cDNA clone IMAGE:3861540 adenocarcinoma 5' read

BF032909 cDNA clone IMAGE:3859670 adenocarcinoma 5' read Protein similarity

BG570352 cDNA clone IMAGE:4717341 lung 5' read

BI458241 cDNA clone IMAGE:5278389 hypothalamus, cell line 5' read

BE314040 cDNA clone IMAGE:3161718 neuroblastoma 5' read

BG707804 cDNA clone IMAGE:4793797 hypothalamus, cell line 5' read

BG577051 cDNA clone IMAGE:4708168 mammary adenocarcinoma, cell line 5' read Protein similarity

BI226894 cDNA clone IMAGE:5096018 burkitt lymphoma 5' read

W78937 cDNA clone IMAGE:415724 pool 5' read

BG707869 cDNA clone IMAGE:4793796 hypothalamus, cell line 5' read

BI226682 cDNA clone IMAGE:5096042 burkitt lymphoma 5' read Protein similarity

W51970 cDNA clone IMAGE:325306 5' read 1.1 kb

BE541137 cDNA clone IMAGE:3450018 placenta 5' read

BE538694 cDNA clone IMAGE:3450909 placenta 5' read

BI906733 cDNA clone IMAGE:5213511 leukocyte 5' read

BG829694 cDNA clone IMAGE:4899182 epithelioid carcinoma cell line 5' read Protein similarity

BI829724 cDNA clone IMAGE:5171589 medulla 5' read

BI824367 cDNA clone IMAGE:5181932 pooled brain, lung, testis 5' read

BG541272 cDNA clone IMAGE:4694777 lung 5' read

BE742720 cDNA clone IMAGE:3835869 adenocarcinoma cell line 5' read Protein similarity

BG826953 cDNA clone IMAGE:4903741 rhabdomyosarcoma 5' read

BI791837 cDNA clone (no-name) purified pancreatic islet 5' read

BF032414 cDNA clone IMAGE:3856583 adenocarcinoma 5' read

BG334816 cDNA clone IMAGE:4577546 melanotic melanoma 5' read Protein similarity

BG743766 cDNA clone IMAGE:4777000 skin 5' read

BI752493 cDNA clone IMAGE:5198298 brain 5' read

BG254436 cDNA clone IMAGE:4477209 adenocarcinoma, cell line 5' read

BG622000 cDNA clone IMAGE:4768079 placenta 5' read Protein similarity

BG741183 cDNA clone IMAGE:4777121 skin 5' read

BE539530 cDNA clone IMAGE:3446671 placenta 5' read

BI669021 cDNA clone IMAGE:5314370 hypothalamus, cell line 5' read

BI668885 cDNA clone IMAGE:5314308 hypothalamus, cell line 5' read Protein similarity

BI668188 cDNA clone IMAGE:5314929 hypothalamus, cell line 5' read

BE743216 cDNA clone IMAGE:3835246 adenocarcinoma cell line 5' read

BG479378 cDNA clone IMAGE:4649597 choriocarcinoma 5' read

BG717676 cDNA clone IMAGE:4830146 testis, cell line 5' read Protein similarity

BI667808 cDNA clone IMAGE:5312850 hypothalamus, cell line 5' read

BE892229 cDNA clone IMAGE:3920438 melanotic melanoma 5' read

BG715330 cDNA clone IMAGE:4799530 hypothalamus, cell line 5' read

BI666886 cDNA clone IMAGE:5311230 hypothalamus, cell line 5' read Protein similarity

BE789190 cDNA clone IMAGE:3882797 large cell carcinoma 5' read

BG714956 cDNA clone IMAGE:4799531 hypothalamus, cell line 5' read

BI600575 cDNA clone IMAGE:5287523 hypothalamus, cell line 5' read

AA196875 cDNA clone IMAGE:629161 muscle 5' read 0.8 kb Protein similarity

AA334127 cDNA clone ATCC:135796 whole embryo 5' read

T49176 cDNA clone IMAGE:70720 placenta 5' read

AI887986 cDNA clone IMAGE:2437137 uterus 3' read 1.2 kb

BI713597 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarity Polyadenylation signal

BI830192 cDNA clone IMAGE:5164743 medulla 5' read

AA596005 cDNA clone IMAGE:1088794 larynx 3' read 1.1 kb

AA826825 cDNA clone IMAGE:1174810 prostate 3' read 1.9 kb

AI023435 cDNA clone IMAGE:1652321 pool 3' read 0.7 kb Polyadenylation signal

AI040779 cDNA clone IMAGE:1656453 pool 3' read 1.1 kb

AI248121 cDNA clone IMAGE:1850480 pool 3' read 1.1 kb

AI653847 cDNA clone IMAGE:2277890 uterus 3' read 0.6 kb

AI805721 cDNA clone IMAGE:2276742 uterus 3' read 1.0 kb Polyadenylation signal

AI888675 cDNA clone IMAGE:2447344 stomach 3' read 1.4 kb Protein similarity

AI925582 cDNA clone IMAGE:2457179 stomach 3' read 1.1 kb

AW731715 cDNA clone IMAGE:2900467 placenta 3' read

BI762415 cDNA clone IMAGE:5189206 pooled colon, kidney, stomach 5' read

BG027384 cDNA clone IMAGE:4390849 osteosarcoma, cell line 5' read Polyadenylation signal

BG253548 cDNA clone IMAGE:4472469 adenocarcinoma, cell line 5' read

T49177 cDNA clone IMAGE:70720 placenta 3' read Protein similarity

W85704 cDNA clone IMAGE:415724 pool 3' read

W86916 cDNA clone IMAGE:416510 pool 3' read Polyadenylation signal

BI914186 cDNA clone IMAGE:5246293 brain 5' read

BG572103 cDNA clone IMAGE:4719906 placenta 5' read Protein similarity

AI337597 cDNA clone IMAGE:1998413 brain 3' read 1.1 kb

AW198076 cDNA clone IMAGE:2705431 pancreas 3' read Polyadenylation signal

AI243065 cDNA clone IMAGE:1848588 pool 3' read 0.8 kb

AA369618 cDNA clone ATCC:174246 placenta 5' read

AI290159 cDNA clone IMAGE:1991718 uterus 3' read 1.1 kb

AA873579 cDNA clone IMAGE:1472154 kidney 3' read 1.0 kb Polyadenylation signal

AW075805 cDNA clone IMAGE:2573613 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read

AA171950 cDNA clone IMAGE:610415 3' read

AI023392 cDNA clone IMAGE:1651555 3' read 1.1 kb

W48824 cDNA clone IMAGE:325306 3' read 1.1 kb Polyadenylation signal

AA962756 cDNA clone IMAGE:1573422 kidney 3' read 0.9 kb

BG610780 cDNA clone IMAGE:4737889 adenocarcinoma 5' read

AI969476 cDNA clone IMAGE:2563115 malignant melanoma, metastatic to lymph node 3' read 1.1 kb

AI969465 cDNA clone IMAGE:2563114 malignant melanoma, metastatic to lymph node 3' read 1.1 kb Polyadenylation signal

AA903426 cDNA clone IMAGE:1517155 smooth muscle 3' read 1.0 kb

SENSE ESTs

R44296	cDNA clone IMAGE:34568	brain	3' read	1.0 kb
BG574607	cDNA clone IMAGE:4705512	mammary adenocarcinoma, cell line	5' read
AA694329	cDNA clone IMAGE:433942	pool	3' read
AL040044	cDNA clone DKFZp434O0512	testis	5' read
AA343085	cDNA clone ATCC:144648	spleen	3' read
AI865068	cDNA clone IMAGE:2411608	lymph	3' read	1.7 kb
D60476	cDNA clone GEN111G04	brain	3' read
AA702245	cDNA clone IMAGE:447514	pool	3' read
AI247984	cDNA clone IMAGE:1849323	pool	3' read	0.8 kb
AI248717	cDNA clone IMAGE:1850220	pool	3' read	0.5 kb
AA011569	cDNA clone IMAGE:429658	pool	3' read	0.9 kb
AI719553	cDNA clone IMAGE:2332526	colon	3' read
BG744870	cDNA clone IMAGE:4849637	natural killer cells, cell line	3' read
AV695255	cDNA clone GKCGDE08	hepatocellular carcinoma	5' read
N86804	cDNA clone L0905	heart	5' read
BG675766	cDNA clone IMAGE:4747103	squamous cell carcinoma	5' read
D80851	cDNA clone GEN111G04	brain	5' read
AV693053	cDNA clone GKCGDC06	hepatocellular carcinoma	5' read
AV684670	cDNA clone GKCGAG04	hepatocellular carcinoma	5' read
R23545	cDNA clone IMAGE:34568	brain	5' read	1.0 kb
BG818848	cDNA clone IMAGE:4914843	anaplastic oligodendroglioma with 1p/19q loss	5' read
BE896189	cDNA clone IMAGE:3923661	melanotic melanoma	5' read
BE783715	cDNA clone IMAGE:3874251	retinoblastoma	5' read
BG744301	cDNA clone IMAGE:4849637	natural killer cells, cell line	5' read

AV736888	cDNA clone CBCAMH05	cord blood	5' read
AA172157	cDNA clone IMAGE:610415		5' read
BG423684	cDNA clone IMAGE:4589304	renal cell adenocarcinoma	5' read
BG112272	cDNA clone IMAGE:4370139	osteosarcoma, cell line	5' read
BF694975	cDNA clone IMAGE:4245142	muscle (skeletal)	5' read
AV744681	cDNA clone CBCANA11	cord blood	5' read
BG571042	cDNA clone IMAGE:4714233	placenta	5' read
BI552558	cDNA clone IMAGE:5273778	hippocampus, cell line	5' read
AA315664	cDNA clone ATCC:111386		5' read
BG702822	cDNA clone IMAGE:4817167	hippocampus, cell line	5' read
BF693558	cDNA clone IMAGE:4246335	muscle (skeletal)	5' read
AA318271	cDNA clone ATCC:118752	eye	5' read
BF691494	cDNA clone IMAGE:4332736	melanotic melanoma, high mdr	5' read
BG714819	cDNA clone IMAGE:4799555	hypothalamus, cell line	5' read
BG437399	cDNA clone IMAGE:4622595	large cell carcinoma	5' read
BG180832	cDNA clone IMAGE:4428905	adenocarcinoma, cell line	5' read
AW673568	cDNA clone IMAGE:2900467	placenta	5' read
BE782447	cDNA clone IMAGE:3870713	retinoblastoma	5' read
AA357562	cDNA clone ATCC:161889	prostate	5' read
BF038947	cDNA clone IMAGE:3865028	adenocarcinoma	5' read
BI458395	cDNA clone IMAGE:5278145	hypothalamus, cell line	5' read
BF035976	cDNA clone IMAGE:3861540	adenocarcinoma	5' read
BF032909	cDNA clone IMAGE:3859670	adenocarcinoma	5' read
BG570352	cDNA clone IMAGE:4717341	lung	5' read
BI458241	cDNA clone IMAGE:5278389	hypothalamus, cell line	5' read
BE314040	cDNA clone IMAGE:3161718	neuroblastoma	5' read
BG707804	cDNA clone IMAGE:4793797	hypothalamus, cell line	5' read
BG577051	cDNA clone IMAGE:4708168	mammary adenocarcinoma, cell line	5' read
BI226894	cDNA clone IMAGE:5096018	burkitt lymphoma	5' read
W78937	cDNA clone IMAGE:415724	pool	5' read
BG707869	cDNA clone IMAGE:4793796	hypothalamus, cell line	5' read
BI226682	cDNA clone IMAGE:5096042	burkitt lymphoma	5' read
W51970	cDNA clone IMAGE:325306		5' read	1.1 kb
BE541137	cDNA clone IMAGE:3450018	placenta	5' read
BE538694	cDNA clone IMAGE:3450909	placenta	5' read
BI906733	cDNA clone IMAGE:5213511	leukocyte	5' read
BG829694	cDNA clone IMAGE:4899182	epithelioid carcinoma cell line	5' read
BI829724	cDNA clone IMAGE:5171589	medulla	5' read
BI824367	cDNA clone IMAGE:5181932	pooled brain, lung, testis	5' read
BG541272	cDNA clone IMAGE:4694777	lung	5' read
BE742720	cDNA clone IMAGE:3835869	adenocarcinoma cell line	5' read
BG826953	cDNA clone IMAGE:4903741	rhabdomyosarcoma	5' read
BI791837	cDNA clone (no-name)	purified pancreatic islet	5' read
BF032414	cDNA clone IMAGE:3856583	adenocarcinoma	5' read
BG334816	cDNA clone IMAGE:4577546	melanotic melanoma	5' read
BG743766	cDNA clone IMAGE:4777000	skin	5' read
BI752493	cDNA clone IMAGE:5198298	brain	5' read
BG254436	cDNA clone IMAGE:4477209	adenocarcinoma, cell line	5' read
BG622000	cDNA clone IMAGE:4768079	placenta	5' read
BG741183	cDNA clone IMAGE:4777121	skin	5' read
BE539530	cDNA clone IMAGE:3446671	placenta	5' read
BI669021	cDNA clone IMAGE:5314370	hypothalamus, cell line	5' read
BI668885	cDNA clone IMAGE:5314308	hypothalamus, cell line	5' read
BI668188	cDNA clone IMAGE:5314929	hypothalamus, cell line	5' read
BE743216	cDNA clone IMAGE:3835246	adenocarcinoma cell line	5' read
BG479378	cDNA clone IMAGE:4649597	choriocarcinoma	5' read
BG717676	cDNA clone IMAGE:4830146	testis, cell line	5' read
BI667808	cDNA clone IMAGE:5312850	hypothalamus, cell line	5' read
BE892229	cDNA clone IMAGE:3920438	melanotic melanoma	5' read
BG715330	cDNA clone IMAGE:4799530	hypothalamus, cell line	5' read
BI666886	cDNA clone IMAGE:5311230	hypothalamus, cell line	5' read
BE789190	cDNA clone IMAGE:3882797	large cell carcinoma	5' read
BG714956	cDNA clone IMAGE:4799531	hypothalamus, cell line	5' read
BI600575	cDNA clone IMAGE:5287523	hypothalamus, cell line	5' read
AA196875	cDNA clone IMAGE:629161	muscle	5' read	0.8 kb
AA334127	cDNA clone ATCC:135796	whole embryo	5' read
T49176	cDNA clone IMAGE:70720	placenta	5' read
AI887986	cDNA clone IMAGE:2437137	uterus	3' read	1.2 kb
BI713597	cDNA clone (no-name)	purified pancreatic islet	3' read
BI830192	cDNA clone IMAGE:5164743	medulla	5' read
AA596005	cDNA clone IMAGE:1088794	larynx	3' read	1.1 kb
AA826825	cDNA clone IMAGE:1174810	prostate	3' read	1.9 kb
AI023435	cDNA clone IMAGE:1652321	pool	3' read	0.7 kb
AI040779	cDNA clone IMAGE:1656453	pool	3' read	1.1 kb
AI248121	cDNA clone IMAGE:1850480	pool	3' read	1.1 kb
AI653847	cDNA clone IMAGE:2277890	uterus	3' read	0.6 kb
AI805721	cDNA clone IMAGE:2276742	uterus	3' read	1.0 kb
AI888675	cDNA clone IMAGE:2447344	stomach	3' read	1.4 kb
AI925582	cDNA clone IMAGE:2457179	stomach	3' read	1.1 kb
AW731715	cDNA clone IMAGE:2900467	placenta	3' read
BI762415	cDNA clone IMAGE:5189206	pooled colon, kidney, stomach	5' read
BG027384	cDNA clone IMAGE:4390849	osteosarcoma, cell line	5' read
BG253548	cDNA clone IMAGE:4472469	adenocarcinoma, cell line	5' read
T49177	cDNA clone IMAGE:70720	placenta	3' read
W85704	cDNA clone IMAGE:415724	pool	3' read
W86916	cDNA clone IMAGE:416510	pool	3' read
BI914186	cDNA clone IMAGE:5246293	brain	5' read
BG572103	cDNA clone IMAGE:4719906	placenta	5' read
AI337597	cDNA clone IMAGE:1998413	brain	3' read	1.1 kb
AW198076	cDNA clone IMAGE:2705431	pancreas	3' read
AI243065	cDNA clone IMAGE:1848588	pool	3' read	0.8 kb
AA369618	cDNA clone ATCC:174246	placenta	5' read
AI290159	cDNA clone IMAGE:1991718	uterus	3' read	1.1 kb
AA873579	cDNA clone IMAGE:1472154	kidney	3' read	1.0 kb
AW075805	cDNA clone IMAGE:2573613	myeloid cells, 18 pooled cml cases, bcr/abl rearrangement	3' read
AA171950	cDNA clone IMAGE:610415		3' read
AI023392	cDNA clone IMAGE:1651555		3' read	1.1 kb
W48824	cDNA clone IMAGE:325306		3' read	1.1 kb
AA962756	cDNA clone IMAGE:1573422	kidney	3' read	0.9 kb
BG610780	cDNA clone IMAGE:4737889	adenocarcinoma	5' read
AI969476	cDNA clone IMAGE:2563115	malignant melanoma, metastatic to lymph node	3' read	1.1 kb
AI969465	cDNA clone IMAGE:2563114	malignant melanoma, metastatic to lymph node	3' read	1.1 kb
AA903426	cDNA clone IMAGE:1517155	smooth muscle	3' read	1.0 kb