Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.283061
Description:hypothetical protein PRO1438
Best-Of-UniGene (BOU) SequenceNM_018600
Genomic Coordiantes Displayed:Bases 52800 to 96200 of contig Hs12_9607_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.283061.jpeg
Best sense EST/protein match:No protein match with an e-value of less than 1e-10
Best antisense EST/protein match:BG612817 matched ref|XP_006694.2| (XM_006694) lymphoid-restricted membrane protein [Homo sapiens] (E = 2e-34)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BG506063 cDNA clone IMAGE:4072509 embryonal carcinoma 5' read Protein similarity
  BG393447 cDNA clone IMAGE:4541016 embryonal carcinoma, cell line 5' read Protein similarity
  BG612817 cDNA clone IMAGE:4771913 embryonal carcinoma 5' read Protein similarity
  BG389416 cDNA clone IMAGE:4522560 embryonal carcinoma, cell line 5' read Protein similarity
  BG389942 cDNA clone IMAGE:4524094 embryonal carcinoma, cell line 5' read Protein similarity
  BG531393 cDNA clone IMAGE:4697531 embryonal carcinoma 5' read
  BG502481 cDNA clone IMAGE:4657463 embryonal carcinoma 5' read Protein similarity
  BG389690 cDNA clone IMAGE:4523746 embryonal carcinoma, cell line 5' read Protein similarity
  BG257718 cDNA clone IMAGE:4508401 embryonal carcinoma, cell line 5' read Protein similarity
  BG534754 cDNA clone IMAGE:4663805 lung 5' read Protein similarity
  BG257757 cDNA clone IMAGE:4508269 embryonal carcinoma, cell line 5' read Protein similarity
  BI772812 cDNA clone IMAGE:5204153 pooled lung and spleen 5' read Protein similarity
  BG614665 cDNA clone IMAGE:4773063 embryonal carcinoma 5' read
  BG612828 cDNA clone IMAGE:4771896 embryonal carcinoma 5' read
  BG529932 cDNA clone IMAGE:4698805 embryonal carcinoma 5' read
  BG612890 cDNA clone IMAGE:4771914 embryonal carcinoma 5' read Protein similarity
  BG502997 cDNA clone IMAGE:4658344 embryonal carcinoma 5' read
  BG257495 cDNA clone IMAGE:4508576 embryonal carcinoma, cell line 5' read
  BG506211 cDNA clone IMAGE:4072524 embryonal carcinoma 5' read
  BG505192 cDNA clone IMAGE:4664175 embryonal carcinoma 5' read
  BG612699 cDNA clone IMAGE:4772169 embryonal carcinoma 5' read

SENSE ESTs