Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.283109
Description:low density lipoprotein receptor defect B complementing
Best-Of-UniGene (BOU) SequenceAB037802
Genomic Coordiantes Displayed:Bases 222876 to 277023 of contig Hs17_28532_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.283109.jpeg
Best sense EST/protein match:AB037802 matched dbj|BAA92619.1| (AB037802) KIAA1381 protein [Homo sapiens] (E = 0.0)
Best antisense EST/protein match:BI461227 matched ref|NP_116226.1| (NM_032837) hypothetical protein FLJ14775 [Homo sapiens] (E = 2e-46)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AV698890 cDNA clone GKCBUE08 hepatocellular carcinoma 5' read
  AW615028 cDNA clone IMAGE:2968765 2 pooled high-grade transitional cell tumors 3' read Polyadenylation signal
  AI926103 cDNA clone IMAGE:2458003 stomach 3' read Polyadenylation signal
  AI858114 cDNA clone IMAGE:2427630 uterus 3' read 2.0 kbProtein similarityPolyadenylation signal
  H05622 cDNA clone IMAGE:43315 brain 3' read 2.2 kbPolyadenylation signal
  AL042487 cDNA clone DKFZp434F0821 testis 3' read
  AW166976 cDNA clone IMAGE:2633586 uterus 3' read Polyadenylation signal
  R56281 cDNA clone IMAGE:41164 brain 3' read 2.0 kbPolyadenylation signal
  C04152 cDNA clone 3NHC2815 heart
  AW090518 cDNA clone IMAGE:2591503 brain 3' read
  AI634908 cDNA clone IMAGE:2294320 pancreas 3' read 2.3 kbPolyadenylation signal
  BG231705 cDNA clone IMAGE:4143300 lymphocyte 3' read
  BI562467 cDNA clone IMAGE:5298398 testis, cell line 5' read
  T58729 cDNA clone IMAGE:77469 liver 3' read 0.8 kb
  AA192896 cDNA clone IMAGE:627768 muscle 3' read 0.9 kb
  AA192821 cDNA clone IMAGE:627769 muscle 3' read 1.9 kb
  BM042792 cDNA clone IMAGE:5556862 melanotic melanoma, cell line 3' read
  BF038401 cDNA clone IMAGE:3863182 adenocarcinoma 5' read
  AA192708 cDNA clone IMAGE:627768 muscle 5' read 0.9 kb
  T58796 cDNA clone IMAGE:77469 liver 5' read 0.8 kb
  AA192715 cDNA clone IMAGE:627769 muscle 5' read 1.9 kb
  R29378 cDNA clone F1499D liver 5' read
  AW176293 cDNA clone (no-name) breast Protein similarity
  AL042486 cDNA clone DKFZp434F0821 testis 5' read Protein similarity
  AW630418 cDNA clone IMAGE:2968765 2 pooled high-grade transitional cell tumors 5' read
  BF531041 cDNA clone IMAGE:4215399 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BE253678 cDNA clone IMAGE:3351490 retinoblastoma 5' read Protein similarity
  BG773537 cDNA clone IMAGE:4837480 testis, cell line 5' read
  BI561513 cDNA clone IMAGE:5298483 testis, cell line 5' read
  BE255049 cDNA clone IMAGE:3351853 retinoblastoma 5' read
  BG718677 cDNA clone IMAGE:4828705 testis, cell line 5' read
  BF527352 cDNA clone IMAGE:4177665 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BI458656 cDNA clone IMAGE:5265836 testis, cell line 5' read Protein similarity
  BI461227 cDNA clone IMAGE:5272212 testis, cell line 5' read
  BG722739 cDNA clone IMAGE:4827015 testis, cell line 5' read
  BF170231 cDNA clone (no-name) blood

SENSE ESTs

  BG771645 cDNA clone IMAGE:4836813 testis, cell line 5' read
  BF966375 cDNA clone IMAGE:4375885 hippocampus, cell line 5' read
  BG700786 cDNA clone IMAGE:4814225 hippocampus, cell line 5' read
  BG699823 cDNA clone IMAGE:4813882 hippocampus, cell line 5' read
  BG702288 cDNA clone IMAGE:4816061 hippocampus, cell line 5' read
  BG716434 cDNA clone IMAGE:4799025 hypothalamus, cell line 5' read
  BI667005 cDNA clone IMAGE:5311265 hypothalamus, cell line 5' read
  BI818164 cDNA clone IMAGE:5173538 pooled brain, lung, testis 5' read
  BE410087 cDNA clone IMAGE:3636944 choriocarcinoma 5' read Protein similarity
  AW246210 cDNA clone IMAGE:2821581 small cell carcinoma 5' read Protein similarity
  BI818645 cDNA clone IMAGE:5174431 pooled brain, lung, testis 5' read
  BG897224 cDNA clone (no-name) cartilage
  BE409109 cDNA clone IMAGE:3635213 choriocarcinoma 5' read Protein similarity
  BI820888 cDNA clone IMAGE:5175102 pooled brain, lung, testis 5' read
  AW651704 cDNA clone IMAGE:2901131 choriocarcinoma 5' read Protein similarity
  BE410617 cDNA clone IMAGE:3638020 choriocarcinoma 5' read Protein similarity
  BE884918 cDNA clone IMAGE:3908365 leiomyosarcoma 5' read Protein similarity
  BE539847 cDNA clone IMAGE:3448383 placenta 5' read Protein similarity
  BE255647 cDNA clone IMAGE:3352770 retinoblastoma 5' read Protein similarity
  BE254601 cDNA clone IMAGE:3354154 retinoblastoma 5' read Protein similarity
  BE256853 cDNA clone IMAGE:3352942 retinoblastoma 5' read Protein similarity
  BG828279 cDNA clone IMAGE:4906345 rhabdomyosarcoma 5' read Protein similarity
  BI193621 cDNA clone IMAGE:5089948 epithelioid carcinoma cell line 5' read
  BE300475 cDNA clone IMAGE:2960392 rhabdomyosarcoma 5' read Protein similarity
  BI113820 cDNA clone IMAGE:5019996 rhabdomyosarcoma 5' read Protein similarity
  BE294291 cDNA clone IMAGE:3528260 rhabdomyosarcoma 5' read Protein similarity
  BI257235 cDNA clone IMAGE:5123038 choriocarcinoma 5' read Protein similarity
  BE872718 cDNA clone IMAGE:3854903 adenocarcinoma 5' read Protein similarity
  BG105443 cDNA clone IMAGE:4422051 adrenal cortex carcinoma, cell line 5' read Protein similarity
  AA192573 cDNA clone IMAGE:628438 muscle 5' read 1.5 kbProtein similarity
  BE392861 cDNA clone IMAGE:3626059 endometrium, adenocarcinoma cell line 5' read Protein similarity
  AA319188 cDNA clone ATCC:119916 adrenal gland 5' read Protein similarity
  BE893648 cDNA clone IMAGE:3921423 melanotic melanoma 5' read Protein similarity
  BE743054 cDNA clone IMAGE:3835964 adenocarcinoma cell line 5' read Protein similarity
  BF966633 cDNA clone IMAGE:4375885 hippocampus, cell line 3' read Protein similarity
  AI952238 cDNA clone IMAGE:2547058 two pooled squamous cell carcinomas 3' read 1.7 kbProtein similarityPolyadenylation signal
  AI926726 cDNA clone IMAGE:2458793 stomach 3' read 3.3 kb
  AV683775 cDNA clone GKCBUF01 hepatocellular carcinoma 5' read
  AV692484 cDNA clone GKCCBD11 hepatocellular carcinoma 5' read Protein similarity
  AV695783 cDNA clone GKCCBG09 hepatocellular carcinoma 5' read Protein similarity
  AV691268 cDNA clone GKCBWE12 hepatocellular carcinoma 5' read
  AV709278 cDNA clone ADCAXG10 adrenal gland 5' read Protein similarity
  AW673164 cDNA clone IMAGE:2901131 choriocarcinoma 3' read Protein similarityPolyadenylation signal
  AA323326 cDNA clone ATCC:123859 brain 5' read Protein similarity
  AV699431 cDNA clone GKCBWE12 hepatocellular carcinoma 3' read Protein similarity
  AV700764 cDNA clone GKCBUE08 hepatocellular carcinoma 3' read Protein similarity
  AV700026 cDNA clone GKCBUF01 hepatocellular carcinoma 3' read Protein similarity
  AA193194 cDNA clone IMAGE:628438 muscle 3' read 1.5 kbProtein similarity
  AI521632 cDNA clone IMAGE:2183187 stomach 3' read 0.6 kbProtein similarity
  AI491912 cDNA clone IMAGE:2178245 uterus 3' read 2.0 kbProtein similarityPolyadenylation signal
  AW249944 cDNA clone IMAGE:2821581 small cell carcinoma 3' read Protein similarityPolyadenylation signal
  BF979894 cDNA clone IMAGE:4374175 testis, cell line 3' read Protein similarity
  AW027835 cDNA clone IMAGE:2533982 stomach 3' read Protein similarityPolyadenylation signal
  AI434093 cDNA clone IMAGE:2132046 stomach 3' read 3.0 kbProtein similarityPolyadenylation signal
  BG152387 cDNA clone IMAGE:4147900 glioblastoma without egfr amplification 3' read Protein similarityPolyadenylation signal
  AA193234 cDNA clone IMAGE:628414 muscle 3' read 2.7 kb
  AI433927 cDNA clone IMAGE:2130187 pancreas 3' read 2.1 kbProtein similarityPolyadenylation signal
  AW027844 cDNA clone IMAGE:2533981 stomach 3' read Protein similarityPolyadenylation signal
  BG912267 cDNA clone IMAGE:4942502 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  AI806099 cDNA clone IMAGE:2207527 uterus 3' read 0.7 kbProtein similarityPolyadenylation signal