Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.284153
Description:Fanconi anemia, complementation group A
Best-Of-UniGene (BOU) SequenceNM_000135
Genomic Coordiantes Displayed:Bases 640000 to 710000 of contig Hs16_10699_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.284153.jpeg
Best sense EST/protein match:AU127015 matched ref|NP_000126.1| (NM_000135) Fanconi anemia, complementation group A; Fanconi anemia, (E = e-114)
Best antisense EST/protein match:BG259388 matched ref|XP_047520.1| (XM_047520) hypothetical protein XP_047520 [Homo sapiens] (E = 5e-93)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI983201 cDNA clone IMAGE:2559632 three pooled meningiomas 3' read 1.0 kbProtein similarityPolyadenylation signal
  AW074388 cDNA clone IMAGE:2573845 juvenile granulosa tumor 3' read Polyadenylation signal
  AL120228 cDNA clone DKFZp761G217 amygdala 3' read Protein similarity
  BI819458 cDNA clone IMAGE:5175132 pooled brain, lung, testis 5' read Protein similarity
  AV733027 cDNA clone cdAAKA09 pheochromocytoma 5' read Protein similarity
  Z40208 cDNA clone c1vh03 brain 3' read Polyadenylation signal
  BI519807 cDNA clone IMAGE:5211318 leukocyte 3' read Protein similarity
  AI915238 cDNA clone IMAGE:2268313 uterus 3' read 1.5 kb
  BG259388 cDNA clone IMAGE:4509258 embryonal carcinoma, cell line 5' read Protein similarity
  AA322137 cDNA clone ATCC:122681 brain 5' read Protein similarity
  BF529606 cDNA clone IMAGE:4181287 anaplastic oligodendroglioma with 1p/19q loss 5' read
  AL120227 cDNA clone DKFZp761G217 amygdala 5' read
  AA329427 cDNA clone ATCC:131076 whole embryo 5' read
  BI753531 cDNA clone IMAGE:5196957 brain 5' read

SENSE ESTs

  BM014328 cDNA clone IMAGE:5415898 mammary adenocarcinoma, cell line 5' read Protein similarity
  AU099960 cDNA clone KAT09530 Protein similarity
  BG724266 cDNA clone IMAGE:4830171 testis, cell line 5' read Protein similarity
  BE549072 cDNA clone IMAGE:3456104 choriocarcinoma 5' read Protein similarity
  BF969936 cDNA clone IMAGE:4360594 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BG719578 cDNA clone IMAGE:4822217 testis, cell line 5' read Protein similarity
  BI227134 cDNA clone IMAGE:5096357 burkitt lymphoma 5' read Protein similarity
  BE514494 cDNA clone IMAGE:3635188 burkitt lymphoma 5' read Protein similarity
  BE561544 cDNA clone IMAGE:3678214 burkitt lymphoma 5' read Protein similarity
  BE732661 cDNA clone IMAGE:3925843 choriocarcinoma 5' read Protein similarity
  BI223606 cDNA clone IMAGE:5105130 choriocarcinoma 5' read Protein similarity
  BI222514 cDNA clone IMAGE:5103251 choriocarcinoma 5' read Protein similarity
  AA353177 cDNA clone ATCC:153391 5' read Protein similarity
  BG484069 cDNA clone IMAGE:4617907 lung 5' read
  AI567090 cDNA clone IMAGE:2215561 ovary 3' read 1.1 kbPolyadenylation signal
  AA340375 cDNA clone ATCC:142057 brain 5' read
  AV686784 cDNA clone GKCDNB10 hepatocellular carcinoma 5' read
  AA071064 cDNA clone IMAGE:530585 5' read 3.9 kbProtein similarity
  BG423693 cDNA clone IMAGE:4589354 renal cell adenocarcinoma 5' read Protein similarity
  BE891556 cDNA clone IMAGE:3920505 melanotic melanoma 5' read Protein similarity
  BE792714 cDNA clone IMAGE:3939398 small cell carcinoma 5' read Protein similarity
  BE798323 cDNA clone IMAGE:3935885 small cell carcinoma 5' read Protein similarity
  BG339013 cDNA clone IMAGE:4554585 leiomyosarcoma cell line 5' read Protein similarity
  BI088358 cDNA clone IMAGE:4992658 placenta 5' read Protein similarity
  BM016954 cDNA clone IMAGE:5425099 astrocytoma grade iv, cell line 5' read Protein similarity
  BE790858 cDNA clone IMAGE:3936762 small cell carcinoma 5' read Protein similarity
  BI909883 cDNA clone IMAGE:5219475 leukocyte 5' read Protein similarity
  BI820620 cDNA clone IMAGE:5175929 pooled brain, lung, testis 5' read
  BI908441 cDNA clone IMAGE:5216279 leukocyte 5' read Protein similarity
  BG331198 cDNA clone IMAGE:4549849 large cell carcinoma 5' read Protein similarity
  AU127015 cDNA clone NT2RP2000395 5' read Protein similarity
  AW651715 cDNA clone IMAGE:2901158 choriocarcinoma 5' read Protein similarity
  BG424159 cDNA clone IMAGE:4586649 renal cell adenocarcinoma 5' read Protein similarity
  BG036552 cDNA clone IMAGE:4427790 adenocarcinoma, cell line 5' read Protein similarity
  BG678673 cDNA clone IMAGE:4749473 squamous cell carcinoma 5' read Protein similarity
  BI226468 cDNA clone IMAGE:5095255 burkitt lymphoma 5' read Protein similarity
  BI226568 cDNA clone IMAGE:5095691 burkitt lymphoma 5' read Protein similarity
  BE397785 cDNA clone IMAGE:3619909 burkitt lymphoma 5' read Protein similarity
  BE562031 cDNA clone IMAGE:3678309 burkitt lymphoma 5' read Protein similarity
  BE562419 cDNA clone IMAGE:3679392 burkitt lymphoma 5' read Protein similarity
  BE562321 cDNA clone IMAGE:3677361 burkitt lymphoma 5' read Protein similarity
  BE513740 cDNA clone IMAGE:3633849 burkitt lymphoma 5' read Protein similarity
  BE396303 cDNA clone IMAGE:3619589 burkitt lymphoma 5' read Protein similarity
  BE268830 cDNA clone IMAGE:3143198 burkitt lymphoma 5' read Protein similarity
  BG469463 cDNA clone IMAGE:4660839 adenocarcinoma cell line 5' read Protein similarity
  BG248513 cDNA clone IMAGE:4546360 adenocarcinoma cell line 5' read Protein similarity
  AW083279 cDNA clone IMAGE:2583583 moderately differentiated adenocarcinoma 3' read Protein similarity
  R61618 cDNA clone IMAGE:42402 brain 5' read 1.7 kbProtein similarity
  AW673176 cDNA clone IMAGE:2901158 choriocarcinoma 3' read Protein similarity
  AW613272 cDNA clone IMAGE:2968034 2 pooled high-grade transitional cell tumors 3' read Protein similarity
  AI962930 cDNA clone IMAGE:2508460 uterus 3' read 1.5 kbProtein similarity
  AW117979 cDNA clone IMAGE:2612251 uterus 3' read Protein similarity
  AW304189 cDNA clone IMAGE:2817627 two pooled squamous cell carcinomas 3' read Protein similarity
  AA699308 cDNA clone IMAGE:432543 pool 3' read Protein similarity
  AA071065 cDNA clone IMAGE:530585 3' read 3.9 kbProtein similarity
  BG255791 cDNA clone IMAGE:4476213 adenocarcinoma, cell line 5' read Protein similarity
  BG341224 cDNA clone IMAGE:4575836 primary b-cells from tonsils (cell line) 5' read Protein similarity
  AI520898 cDNA clone IMAGE:2183403 stomach 3' read 0.9 kb
  R60950 cDNA clone IMAGE:42402 brain 3' read 1.7 kb
  AW615754 cDNA clone IMAGE:2824435 small cell carcinoma 3' read