Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.296406
Description:KIAA0685 gene product
Best-Of-UniGene (BOU) SequenceNM_014678
Genomic Coordiantes Displayed:Bases 1000 to 29000 of contig Hs22_11683_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.296406.jpeg
Best sense EST/protein match:AU125375 matched ref|NP_055493.1| (NM_014678) KIAA0685 gene product [Homo sapiens] (E = e-121)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BF306316 cDNA clone IMAGE:4138939 rhabdomyosarcoma 5' read
  AI129111 cDNA clone IMAGE:1663160 3' read 1.0 kbPolyadenylation signal
  AI863318 cDNA clone IMAGE:2291031 tumor, 5 pooled (see description) 3' read
  BG818969 cDNA clone IMAGE:4914839 anaplastic oligodendroglioma with 1p/19q loss 5' read
  BE047660 cDNA clone IMAGE:2291031 tumor, 5 pooled (see description) 5' read
  AV709581 cDNA clone ADCAOF07 adrenal gland 5' read
  AW273387 cDNA clone IMAGE:2762435 uterus 3' read
  AW591919 cDNA clone IMAGE:2850495 lymph 3' read
  BF435499 cDNA clone IMAGE:3395172 sciatic nerve 3' read
  AW958494 cDNA clone (no-name)
  BF476012 cDNA clone IMAGE:3396040 sciatic nerve 3' read Polyadenylation signal
  AI446410 cDNA clone IMAGE:2141145 stomach 3' read 4.5 kbPolyadenylation signal
  AA309922 cDNA clone ATCC:156028 5' read
  BE870667 cDNA clone IMAGE:3852192 adenocarcinoma 5' read
  BG576531 cDNA clone IMAGE:4707142 mammary adenocarcinoma, cell line 5' read
  AA323399 cDNA clone ATCC:124012 brain 5' read
  BG912028 cDNA clone IMAGE:4941762 anaplastic oligodendroglioma with 1p/19q loss 5' read

SENSE ESTs

  AU125375 cDNA clone NT2RM4001489 5' read Protein similarity
  BI765490 cDNA clone IMAGE:5190781 pooled colon, kidney, stomach 5' read Protein similarity
  BG283683 cDNA clone IMAGE:4519906 adenocarcinoma, cell line 5' read Protein similarity
  BE787155 cDNA clone IMAGE:3879653 large cell carcinoma 5' read Protein similarity
  BI544760 cDNA clone IMAGE:5284542 hippocampus, cell line 5' read Protein similarity
  BG759991 cDNA clone IMAGE:4878819 primary b-cells from tonsils (cell line) 5' read Protein similarity
  AU138035 cDNA clone PLACE1007730 placenta 5' read Protein similarity
  BG111326 cDNA clone IMAGE:4370451 osteosarcoma, cell line 5' read Protein similarity
  BM127415 cDNA clone (no-name) islets of langerhans 5' read
  BM055227 cDNA clone (no-name) islets of langerhans 5' read
  AA358990 cDNA clone ATCC:163079 lung 5' read Protein similarity
  BF340306 cDNA clone IMAGE:4184883 glioblastoma with egfr amplification 5' read Protein similarity
  BI964766 cDNA clone (no-name) islets of langerhans 5' read Protein similarity
  BI964762 cDNA clone (no-name) islets of langerhans 5' read Protein similarity
  BG768098 cDNA clone IMAGE:4876992 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BG033689 cDNA clone IMAGE:4402570 mammary adenocarcinoma, cell line 5' read Protein similarity
  BE545657 cDNA clone IMAGE:3463858 choriocarcinoma 5' read Protein similarity
  AL045530 cDNA clone DKFZp434K105 testis 5' read Protein similarity
  BE909815 cDNA clone IMAGE:3898029 epithelioid carcinoma 5' read Protein similarity
  BG329469 cDNA clone IMAGE:4558736 retinoblastoma 5' read Protein similarity
  AL044954 cDNA clone DKFZp434A154 testis 5' read Protein similarity
  AW957323 cDNA clone (no-name) Protein similarity
  AA353241 cDNA clone ATCC:153455 5' read Protein similarity
  BI964035 cDNA clone (no-name) islets of langerhans 5' read Protein similarity
  BM127147 cDNA clone (no-name) islets of langerhans 3' read Polyadenylation signal
  BM054973 cDNA clone (no-name) islets of langerhans 3' read Polyadenylation signal
  AI302794 cDNA clone IMAGE:1902478 kidney 3' read 0.8 kbProtein similarity
  AL044737 cDNA clone DKFZp434H2435 testis 5' read Protein similarity
  BI963761 cDNA clone (no-name) islets of langerhans 3' read Protein similarityPolyadenylation signal
  AI969505 cDNA clone IMAGE:2563172 malignant melanoma, metastatic to lymph node 3' read Protein similarityPolyadenylation signal
  BI258501 cDNA clone IMAGE:5111784 choriocarcinoma 5' read Protein similarity
  AI879426 cDNA clone IMAGE:2518232 frontal lobe 3' read Protein similarityPolyadenylation signal
  AW731698 cDNA clone IMAGE:2900437 placenta 3' read Protein similarityPolyadenylation signal
  AU149046 cDNA clone NT2RM4001489 3' read Protein similarityPolyadenylation signal
  BF664401 cDNA clone IMAGE:4309815 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BE048019 cDNA clone IMAGE:2291565 tumor, 5 pooled (see description) 5' read 1.3 kbProtein similarity
  AI745690 cDNA clone IMAGE:2219293 ovary 3' read Protein similarityPolyadenylation signal
  AI813539 cDNA clone IMAGE:2409422 lymph 3' read 1.0 kbProtein similarityPolyadenylation signal
  AA366960 cDNA clone ATCC:171636 pancreas 5' read Protein similarity
  AW778791 cDNA clone IMAGE:3037243 colon 3' read Protein similarityPolyadenylation signal
  AU157434 cDNA clone PLACE1007730 placenta 3' read Protein similarityPolyadenylation signal
  AW302538 cDNA clone IMAGE:2827163 three pooled meningiomas 3' read Protein similarityPolyadenylation signal
  F29393 cDNA clone s4000076E08 muscle Protein similarity
  AW872865 cDNA clone IMAGE:3124660 squamous cell carcinoma 3' read Protein similarityPolyadenylation signal
  AW474166 cDNA clone IMAGE:2852902 lymph 3' read Protein similarityPolyadenylation signal
  AI984728 cDNA clone IMAGE:2493335 uterus 3' read 0.6 kbProtein similarityPolyadenylation signal
  N66973 cDNA clone IMAGE:287234 ear 3' read Polyadenylation signal
  AI583001 cDNA clone IMAGE:2227187 pancreas 3' read 1.8 kbProtein similarityPolyadenylation signal
  F04506 cDNA clone czpd06 brain 3' read Protein similarityPolyadenylation signal
  F01717 cDNA clone c0bf10 brain 3' read Polyadenylation signal
  AA341237 cDNA clone ATCC:142892 kidney 5' read
  AI952601 cDNA clone IMAGE:2549546 normal epithelium 3' read Polyadenylation signal
  AI867060 cDNA clone IMAGE:2291565 tumor, 5 pooled (see description) 3' read 1.3 kbPolyadenylation signal
  AA676532 cDNA clone IMAGE:433043 pool 3' read Polyadenylation signal
  AV682343 cDNA clone GKBAGD09 hepatocellular carcinoma 5' read
  AW673546 cDNA clone IMAGE:2900437 placenta 5' read Protein similarity
  BF205187 cDNA clone IMAGE:4109791 rhabdomyosarcoma 5' read Protein similarity