Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.296776
Description:regulatory factor X-associated ankyrin-containing protein
Best-Of-UniGene (BOU) SequenceNM_003721
Genomic Coordiantes Displayed:Bases 66000 to 94000 of contig Hs19_11452_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.296776.jpeg
Best sense EST/protein match:AW411360 matched ref|NP_003712.1| (NM_003721) regulatory factor X-associated ankyrin-containing (E = e-105)
Best antisense EST/protein match:BI829387 matched ref|XP_072027.1| (XM_072027) hypothetical protein XP_072027 [Homo sapiens] (E = 5e-77)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AA378667 cDNA clone ATCC:183074 synovial membrane 5' read
  BF699895 cDNA clone IMAGE:4284322 primitive neuroectoderm 5' read
  AA085585 cDNA clone IMAGE:511219 5' read 1.7 kb
  BF244152 cDNA clone IMAGE:4080789 glioblastoma 5' read
  BE206891 cDNA clone IMAGE:2823469 small cell carcinoma 5' read
  BG614555 cDNA clone IMAGE:4773246 embryonal carcinoma 5' read
  AA306459 cDNA clone ATCC:160580 5' read
  BE781327 cDNA clone IMAGE:3870368 retinoblastoma 5' read
  BF127406 cDNA clone IMAGE:4053336 leiomyosarcoma cell line 5' read
  BE542658 cDNA clone IMAGE:3453421 placenta 5' read
  BE265230 cDNA clone IMAGE:3537480 small cell carcinoma 5' read
  BG778679 cDNA clone IMAGE:4807575 adenocarcinoma 5' read
  BF244875 cDNA clone IMAGE:4082968 glioblastoma 5' read
  BI829387 cDNA clone IMAGE:5172073 medulla 5' read
  BF573788 cDNA clone IMAGE:4252329 melanotic melanoma, high mdr 5' read
  AA311632 cDNA clone ATCC:158856 5' read
  BG676237 cDNA clone IMAGE:4747808 squamous cell carcinoma 5' read
  BF218063 cDNA clone IMAGE:4095444 glioblastoma 5' read
  BE275344 cDNA clone IMAGE:3346368 melanotic melanoma 5' read
  BI914631 cDNA clone IMAGE:5243686 brain 5' read
  BG763195 cDNA clone IMAGE:4860892 melanotic melanoma, high mdr (cell line) 5' read
  BF970480 cDNA clone IMAGE:4360739 adrenal cortex carcinoma, cell line 5' read
  BF317090 cDNA clone IMAGE:4136062 neuroblastoma 5' read
  BF184084 cDNA clone IMAGE:4064043 from chronic myelogenous leukemia 5' read
  AI525679 cDNA clone (no-name) Prostate 5' read
  AV762939 cDNA clone MDSDNH08 bone marrow 5' read
  BI752134 cDNA clone IMAGE:5192807 brain 5' read
  BF698726 cDNA clone IMAGE:4283033 primitive neuroectoderm 5' read
  BF303584 cDNA clone IMAGE:4120490 rhabdomyosarcoma 5' read
  AA378666 cDNA clone ATCC:183074 synovial membrane 5' read
  BG702907 cDNA clone IMAGE:4817531 hippocampus, cell line 5' read
  BG402160 cDNA clone IMAGE:4593723 kidney 5' read
  AA318061 cDNA clone ATCC:118684 eye 5' read
  H13988 cDNA clone C21 5' read
  BI838650 cDNA clone IMAGE:5225351 pooled pancreas and spleen 5' read
  BI824739 cDNA clone IMAGE:5174717 pooled brain, lung, testis 5' read
  AA339844 cDNA clone ATCC:141466 skin 5' read
  BG681140 cDNA clone IMAGE:4753696 squamous cell carcinoma 5' read
  AI281810 cDNA clone IMAGE:1960939 esophagus 3' read 0.9 kbProtein similarity
  BI917397 cDNA clone IMAGE:5249025 brain 5' read
  AI565603 cDNA clone IMAGE:2179247 uterus 3' read 1.4 kb
  AI805698 cDNA clone IMAGE:2269303 uterus 3' read 1.3 kbProtein similarity
  AI915034 cDNA clone IMAGE:2216776 ovary 3' read
  AA085586 cDNA clone IMAGE:511219 3' read 1.7 kb
  AI270772 cDNA clone IMAGE:1963992 ovary 3' read 0.8 kb
  AW732039 cDNA clone IMAGE:2823469 small cell carcinoma 3' read Protein similarity
  BG939594 cDNA clone HBMSC_cr58d10 bone 3' read
  BG167293 cDNA clone IMAGE:4452454 hypernephroma, cell line 5' read
  AI864818 cDNA clone IMAGE:2411100 lymph 3' read 1.4 kb
  AW079264 cDNA clone IMAGE:2574863 juvenile granulosa tumor 3' read

SENSE ESTs

  BG950042 cDNA clone (no-name) colon
  AI523056 cDNA clone IMAGE:2128715 aorta 3' read Polyadenylation signal
  AA641235 cDNA clone IMAGE:1173694 prostate 3' read Protein similarity
  AI915247 cDNA clone IMAGE:2268364 uterus 3' read 1.4 kbPolyadenylation signal
  AI680205 cDNA clone IMAGE:2264650 uterus 3' read 1.2 kbProtein similarityPolyadenylation signal
  AI571591 cDNA clone IMAGE:2225950 pancreas 3' read 1.2 kbProtein similarityPolyadenylation signal
  AW276525 cDNA clone IMAGE:2760182 two pooled squamous cell carcinomas 3' read Protein similarityPolyadenylation signal
  AA946558 cDNA clone IMAGE:1589681 kidney 3' read 1.2 kbProtein similarityPolyadenylation signal
  BE798756 cDNA clone IMAGE:3939996 small cell carcinoma 5' read Protein similarityPolyadenylation signal
  AA878021 cDNA clone IMAGE:1475333 head and neck 3' read 1.2 kbProtein similarityPolyadenylation signal
  BE535549 cDNA clone IMAGE:3446168 placenta 5' read Protein similarity
  AW411190 cDNA clone IMAGE:2964707 rhabdomyosarcoma 3' read Protein similarity
  BE537298 cDNA clone IMAGE:3452009 placenta 5' read Protein similarity
  BG290689 cDNA clone IMAGE:4517757 transitional cell papilloma, cell line 5' read Protein similarity
  BE563735 cDNA clone IMAGE:3688971 adenocarcinoma 5' read Protein similarity
  BG740813 cDNA clone IMAGE:4777942 skin 5' read Protein similarity
  AW873714 cDNA clone IMAGE:3120755 neuroblastoma 3' read Protein similarityPolyadenylation signal
  AV743063 cDNA clone CBCBCB09 cord blood 5' read Protein similarity
  AI554811 cDNA clone IMAGE:2204957 uterus 3' read 1.4 kbProtein similarityPolyadenylation signal
  AI860572 cDNA clone IMAGE:2424903 uterus 3' read 1.3 kbProtein similarityPolyadenylation signal
  AW411361 cDNA clone IMAGE:2964730 rhabdomyosarcoma 3' read Protein similarityPolyadenylation signal
  AA322948 cDNA clone ATCC:123540 brain 5' read Protein similarity
  BI117626 cDNA clone IMAGE:5015618 small cell carcinoma 5' read Protein similarity
  BI089682 cDNA clone IMAGE:4996074 placenta 5' read Protein similarity
  BF569006 cDNA clone IMAGE:4300642 epithelioid carcinoma cell line 3' read Protein similarity
  BM046919 cDNA clone IMAGE:5455641 carcinoma, cell line 5' read
  AI051582 cDNA clone IMAGE:1674122 pool 3' read 1.6 kbProtein similarity
  BG775418 cDNA clone IMAGE:4761020 carcinoma, cell line 3' read Protein similarityPolyadenylation signal
  BF344713 cDNA clone IMAGE:4153092 glioblastoma with egfr amplification 5' read Protein similarity
  BG774960 cDNA clone IMAGE:4761020 carcinoma, cell line 5' read Protein similarity
  BI820919 cDNA clone IMAGE:5175254 pooled brain, lung, testis 5' read Protein similarity
  BM050964 cDNA clone IMAGE:5424557 normal pigmented retinal epithelium 5' read
  BM047551 cDNA clone IMAGE:5457040 carcinoma, cell line 5' read
  BI333417 cDNA clone IMAGE:5139009 choriocarcinoma 5' read Protein similarity
  BG341936 cDNA clone IMAGE:4576266 primary b-cells from tonsils (cell line) 5' read Protein similarity
  AW958828 cDNA clone (no-name) Protein similarity
  BG340424 cDNA clone IMAGE:4556251 leiomyosarcoma cell line 5' read Protein similarity
  AA306884 cDNA clone ATCC:160991 5' read Protein similarity
  BG288081 cDNA clone IMAGE:4516531 transitional cell papilloma, cell line 5' read Protein similarity
  BG257170 cDNA clone IMAGE:4478512 embryonal carcinoma, cell line 5' read Protein similarity
  BE798669 cDNA clone IMAGE:3938002 small cell carcinoma 5' read Protein similarity
  BG257090 cDNA clone IMAGE:4478511 embryonal carcinoma, cell line 5' read Protein similarity
  BM013327 cDNA clone IMAGE:5434284 neuroblastoma, cell line 5' read Protein similarity
  BG248825 cDNA clone IMAGE:4469740 hypernephroma, cell line 5' read Protein similarity
  BF347390 cDNA clone IMAGE:4156149 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BE274895 cDNA clone IMAGE:3347197 melanotic melanoma 5' read Protein similarity
  BF973323 cDNA clone IMAGE:4330789 leiomyosarcoma cell line 5' read Protein similarity
  BF971132 cDNA clone IMAGE:4358739 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BF205333 cDNA clone IMAGE:4110480 rhabdomyosarcoma 5' read Protein similarity
  BE561067 cDNA clone IMAGE:3677595 burkitt lymphoma 5' read Protein similarity
  AW957285 cDNA clone (no-name) Protein similarity
  BE902719 cDNA clone IMAGE:3958351 choriocarcinoma 5' read Protein similarity
  BE296760 cDNA clone IMAGE:3530675 rhabdomyosarcoma 5' read Protein similarity
  BE886567 cDNA clone IMAGE:3910658 leiomyosarcoma 5' read Protein similarity
  BI227018 cDNA clone IMAGE:5096680 burkitt lymphoma 5' read Protein similarity
  BF347384 cDNA clone IMAGE:4156147 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  BF568703 cDNA clone IMAGE:4300642 epithelioid carcinoma cell line 5' read Protein similarity
  BE276243 cDNA clone IMAGE:3050310 melanotic melanoma 5' read Protein similarity
  BG438182 cDNA clone IMAGE:4622227 large cell carcinoma 5' read Protein similarity
  BG470270 cDNA clone IMAGE:4661327 adenocarcinoma cell line 5' read Protein similarity
  BG488664 cDNA clone IMAGE:4662335 large cell carcinoma 5' read Protein similarity
  BG488761 cDNA clone IMAGE:4662292 large cell carcinoma 5' read Protein similarity
  BE296249 cDNA clone IMAGE:3530213 rhabdomyosarcoma 5' read Protein similarity
  BG490824 cDNA clone IMAGE:4638384 large cell carcinoma 5' read Protein similarity
  BI223049 cDNA clone IMAGE:5106334 choriocarcinoma 5' read Protein similarity
  BI335571 cDNA clone IMAGE:5141688 choriocarcinoma 5' read Protein similarity
  BI837099 cDNA clone IMAGE:5229015 pooled pancreas and spleen 5' read Protein similarity
  BM083596 cDNA clone IMAGE:4622227 large cell carcinoma 5' read
  BE396615 cDNA clone IMAGE:3619582 burkitt lymphoma 5' read Protein similarity
  AW411360 cDNA clone IMAGE:2964730 rhabdomyosarcoma 5' read Protein similarity
  BE397018 cDNA clone IMAGE:3620528 burkitt lymphoma 5' read Protein similarity
  BE397031 cDNA clone IMAGE:3620490 burkitt lymphoma 5' read Protein similarity
  BE397062 cDNA clone IMAGE:3620028 burkitt lymphoma 5' read Protein similarity
  BE513561 cDNA clone IMAGE:3633790 burkitt lymphoma 5' read Protein similarity
  BE548540 cDNA clone IMAGE:3461915 choriocarcinoma 5' read Protein similarity
  BE549468 cDNA clone IMAGE:3463219 choriocarcinoma 5' read Protein similarity
  BE905633 cDNA clone IMAGE:3897360 epithelioid carcinoma 5' read Protein similarity
  BF342054 cDNA clone IMAGE:4148856 glioblastoma with egfr amplification 5' read Protein similarity
  BE267569 cDNA clone IMAGE:2988946 burkitt lymphoma 5' read Protein similarity
  BE269744 cDNA clone IMAGE:3544421 burkitt lymphoma 5' read Protein similarity
  BG031327 cDNA clone IMAGE:4393421 mammary adenocarcinoma, cell line 5' read Protein similarity
  BG253885 cDNA clone IMAGE:4474895 adenocarcinoma, cell line 5' read Protein similarity
  BG284513 cDNA clone IMAGE:4537622 adenocarcinoma, cell line 5' read Protein similarity
  AA352377 cDNA clone ATCC:152589 5' read Protein similarity
  BF347606 cDNA clone IMAGE:4156122 anaplastic oligodendroglioma with 1p/19q loss 5' read Protein similarity
  AW411189 cDNA clone IMAGE:2964707 rhabdomyosarcoma 5' read Protein similarity
  BG754629 cDNA clone IMAGE:4854686 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BG741123 cDNA clone IMAGE:4776956 skin 5' read Protein similarity
  BG425440 cDNA clone IMAGE:4591243 renal cell adenocarcinoma 5' read Protein similarity
  BF183131 cDNA clone IMAGE:4040210 large cell carcinoma 5' read Protein similarity
  BI859972 cDNA clone IMAGE:5394940 mammary adenocarcinoma, cell line 5' read Protein similarity
  BI836365 cDNA clone IMAGE:5222032 pooled pancreas and spleen 5' read Protein similarity
  BE514118 cDNA clone IMAGE:3634551 burkitt lymphoma 5' read Protein similarity
  BE396585 cDNA clone IMAGE:3619301 burkitt lymphoma 5' read Protein similarity
  BI226828 cDNA clone IMAGE:5096207 burkitt lymphoma 5' read Protein similarity
  BG325706 cDNA clone IMAGE:4562266 renal cell adenocarcinoma 5' read Protein similarity
  BE548865 cDNA clone IMAGE:3458109 choriocarcinoma 5' read Protein similarity
  BI836473 cDNA clone IMAGE:5222009 pooled pancreas and spleen 5' read Protein similarity
  BG769701 cDNA clone IMAGE:4870340 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BI769067 cDNA clone IMAGE:5206186 pooled lung and spleen 5' read Protein similarity
  BI821096 cDNA clone IMAGE:5176696 pooled brain, lung, testis 5' read Protein similarity
  BI824827 cDNA clone IMAGE:5174983 pooled brain, lung, testis 5' read Protein similarity
  BI832422 cDNA clone IMAGE:5172412 medulla 5' read Protein similarity
  BF797005 cDNA clone IMAGE:4341034 lymphoma, cell line 5' read Protein similarity
  BI906289 cDNA clone IMAGE:5212639 leukocyte 5' read Protein similarity
  BE388797 cDNA clone IMAGE:3606150 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BE903698 cDNA clone IMAGE:3958246 choriocarcinoma 5' read Protein similarity
  BE784841 cDNA clone IMAGE:3881863 large cell carcinoma 5' read Protein similarity
  AA359562 cDNA clone ATCC:163674 lung 5' read Protein similarity
  BG764094 cDNA clone IMAGE:4862210 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BG768465 cDNA clone IMAGE:4871867 melanotic melanoma, high mdr (cell line) 5' read
  BE267439 cDNA clone IMAGE:3533639 small cell carcinoma 5' read Protein similarity
  T35325 cDNA clone ATCC:106553 prostate 5' read Protein similarity
  N56285 cDNA clone JJ5238 heart 5' read
  AA352984 cDNA clone ATCC:153190 5' read