Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.330310
Description:KIAA0632 protein
Best-Of-UniGene (BOU) SequenceAB014532
Genomic Coordiantes Displayed:Bases 587857 to 631815 of contig Hs7_7969_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.330310.jpeg
Best sense EST/protein match:AU132481 matched pir||T00383 KIAA0632 protein - human (fragment) (E = e-115)
Best antisense EST/protein match:BE883816 matched ref|XP_028488.2| (XM_028488) maternal G10 transcript [Homo sapiens] (E = 6e-85)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BG575861 cDNA clone IMAGE:4707498 mammary adenocarcinoma, cell line 5' read Protein similarity
  BI859393 cDNA clone IMAGE:5396837 mammary adenocarcinoma, cell line 5' read Protein similarity
  BG108600 cDNA clone IMAGE:4366149 osteosarcoma, cell line 5' read Protein similarityPolyadenylation signal
  AW022772 cDNA clone IMAGE:2486118 ear 5' read Protein similarityPolyadenylation signal
  AI129125 cDNA clone IMAGE:1663167 3' read 0.9 kbProtein similarityPolyadenylation signal
  AW088566 cDNA clone IMAGE:2594053 ovary 3' read Protein similarityPolyadenylation signal
  BI966874 cDNA clone (no-name) islets of langerhans 3' read Protein similarityPolyadenylation signal
  BI438586 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarityPolyadenylation signal
  AI358727 cDNA clone IMAGE:2001914 lymph 3' read 1.1 kbProtein similarityPolyadenylation signal
  BE791296 cDNA clone IMAGE:3937117 small cell carcinoma 5' read Protein similarity
  AI887998 cDNA clone IMAGE:2437168 uterus 3' read 0.9 kbProtein similarityPolyadenylation signal
  BG774433 cDNA clone IMAGE:4810869 choriocarcinoma 5' read Protein similarity
  BG707548 cDNA clone IMAGE:4793567 hypothalamus, cell line 5' read Protein similarityPolyadenylation signal
  BI334672 cDNA clone IMAGE:5140808 choriocarcinoma 5' read Protein similarity
  AW090432 cDNA clone IMAGE:2590834 brain 3' read Protein similarityPolyadenylation signal
  AW189410 cDNA clone IMAGE:2675411 uterus 3' read Protein similarityPolyadenylation signal
  AW193942 cDNA clone IMAGE:2683801 uterus 3' read Protein similarityPolyadenylation signal
  BG576624 cDNA clone IMAGE:4706329 mammary adenocarcinoma, cell line 5' read Protein similarity
  AW770241 cDNA clone IMAGE:3007397 2 pooled wilms' tumors, one primary and one metastatic to 3' read Protein similarityPolyadenylation signal
  BI857304 cDNA clone IMAGE:5393336 mammary adenocarcinoma, cell line 5' read Protein similarity
  BE559595 cDNA clone IMAGE:3687861 burkitt lymphoma 5' read Protein similarity
  AA329249 cDNA clone ATCC:130897 whole embryo 5' read Protein similarity
  AW130545 cDNA clone IMAGE:2621732 stomach 3' read Protein similarityPolyadenylation signal
  AA369523 cDNA clone ATCC:174419 prostate 3' read Protein similarityPolyadenylation signal
  AW514794 cDNA clone IMAGE:2808753 uterus 3' read Protein similarityPolyadenylation signal
  AA372059 cDNA clone ATCC:176414 parathyroid 3' read Polyadenylation signal
  AW516087 cDNA clone IMAGE:2790833 uterus 3' read Protein similarityPolyadenylation signal
  AI459662 cDNA clone IMAGE:2151928 colon 3' read Protein similarityPolyadenylation signal
  AA126228 cDNA clone IMAGE:511466 3' read 0.8 kbProtein similarityPolyadenylation signal
  AA384973 cDNA clone ATCC:189136 thyroid 3' read Polyadenylation signal
  BI712067 cDNA clone (no-name) purified pancreatic islet 3' read Protein similarityPolyadenylation signal
  AA740394 cDNA clone IMAGE:1324996 kidney 3' read 0.9 kbProtein similarityPolyadenylation signal
  BE794032 cDNA clone IMAGE:3940957 small cell carcinoma 5' read Protein similarity
  BF382978 cDNA clone IMAGE:4050582 primitive neuroectoderm 5' read Protein similarity
  AI302076 cDNA clone IMAGE:1902370 kidney 3' read 0.9 kbProtein similarityPolyadenylation signal
  AI924042 cDNA clone IMAGE:2451516 uterus 3' read Protein similarityPolyadenylation signal
  BE796031 cDNA clone IMAGE:3945386 small cell carcinoma 5' read Protein similarity
  BE543140 cDNA clone IMAGE:3455231 choriocarcinoma 5' read Protein similarity
  BG284283 cDNA clone IMAGE:4519265 adenocarcinoma, cell line 5' read Protein similarity
  BE612883 cDNA clone IMAGE:3855624 adenocarcinoma 3' read Protein similarity
  BM051695 cDNA clone IMAGE:5419650 burkitt lymphoma 5' read
  BI226782 cDNA clone IMAGE:5096245 burkitt lymphoma 5' read Protein similarity
  BE883816 cDNA clone IMAGE:3911788 leiomyosarcoma 5' read Protein similarity
  BG493925 cDNA clone IMAGE:4673304 mucoepidermoid carcinoma 5' read Protein similarity
  BG716005 cDNA clone IMAGE:4796469 hypothalamus, cell line 5' read Protein similarity
  AA372060 cDNA clone ATCC:176414 parathyroid 5' read Protein similarity
  BI086186 cDNA clone IMAGE:5013211 astrocytoma grade iv, cell line 3' read Protein similarity
  BG027413 cDNA clone IMAGE:4390809 osteosarcoma, cell line 5' read Protein similarity
  BG030850 cDNA clone IMAGE:4393979 mammary adenocarcinoma, cell line 5' read Protein similarityPolyadenylation signal
  BG387863 cDNA clone IMAGE:4521307 embryonal carcinoma, cell line 5' read Protein similarity
  BI262471 cDNA clone IMAGE:5087938 lymphoma, cell line 3' read Protein similarity
  BI085403 cDNA clone IMAGE:5013211 astrocytoma grade iv, cell line 5' read Protein similarity
  BM009030 cDNA clone IMAGE:5422960 adenocarcinoma 5' read Protein similarity
  BI827895 cDNA clone IMAGE:5165476 medulla 5' read Protein similarity
  BM050897 cDNA clone IMAGE:5424416 normal pigmented retinal epithelium 5' read
  BE260922 cDNA clone IMAGE:3510017 neuroblastoma 5' read Protein similarity
  BG490653 cDNA clone IMAGE:4638702 large cell carcinoma 5' read Protein similarity
  BE612427 cDNA clone IMAGE:3855624 adenocarcinoma 5' read Protein similarity
  BM013431 cDNA clone IMAGE:5434485 neuroblastoma, cell line 5' read Protein similarity
  BG480745 cDNA clone IMAGE:4653443 choriocarcinoma 5' read Protein similarity
  BG475160 cDNA clone IMAGE:4623147 melanotic melanoma 5' read Protein similarity
  BF680821 cDNA clone IMAGE:4297191 prostate 5' read Protein similarity
  BI438913 cDNA clone (no-name) purified pancreatic islet 5' read Protein similarity
  BG613128 cDNA clone IMAGE:4771505 embryonal carcinoma 5' read Protein similarity
  BG475198 cDNA clone IMAGE:4623113 melanotic melanoma 5' read Protein similarity
  BI094094 cDNA clone IMAGE:5001301 placenta 5' read Protein similarity
  BF309964 cDNA clone IMAGE:4138162 rhabdomyosarcoma 5' read Protein similarity
  BI115609 cDNA clone IMAGE:5014642 small cell carcinoma 5' read Protein similarity
  AV763182 cDNA clone MDSBSH07 bone marrow 5' read Protein similarity
  BG685617 cDNA clone IMAGE:4765270 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BG685906 cDNA clone IMAGE:4766456 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BI908996 cDNA clone IMAGE:5219047 leukocyte 5' read Protein similarity
  BF309269 cDNA clone IMAGE:4121716 rhabdomyosarcoma 5' read Protein similarity
  BF305344 cDNA clone IMAGE:4138325 rhabdomyosarcoma 5' read Protein similarity
  BG540803 cDNA clone IMAGE:4695310 lung 5' read Protein similarity
  BE785744 cDNA clone IMAGE:3881092 large cell carcinoma 5' read Protein similarity
  BI963074 cDNA clone (no-name) islets of langerhans 5' read Protein similarity
  BG323493 cDNA clone IMAGE:4559914 renal cell adenocarcinoma 5' read Protein similarity
  BE727045 cDNA clone IMAGE:3832996 melanotic melanoma 5' read Protein similarity
  BG480264 cDNA clone IMAGE:4652952 choriocarcinoma 5' read Protein similarity
  BM014421 cDNA clone IMAGE:5416456 mammary adenocarcinoma, cell line 5' read Protein similarity
  BG765978 cDNA clone IMAGE:4863248 melanotic melanoma, high mdr (cell line) 5' read Protein similarity
  BG251188 cDNA clone IMAGE:4473455 adenocarcinoma, cell line 5' read Protein similarity
  BE278909 cDNA clone IMAGE:3139684 choriocarcinoma 5' read Protein similarity
  BG703725 cDNA clone IMAGE:4819085 hippocampus, cell line 5' read Protein similarity
  BG708697 cDNA clone IMAGE:4796914 hypothalamus, cell line 5' read Protein similarity
  BM009617 cDNA clone IMAGE:5443851 amelanotic melanoma, cell line 5' read Protein similarity
  BM015970 cDNA clone IMAGE:5418355 mammary adenocarcinoma, cell line 5' read Protein similarity
  BG705714 cDNA clone IMAGE:4791706 hypothalamus, cell line 5' read Protein similarity
  BG490743 cDNA clone IMAGE:4638967 large cell carcinoma 5' read Protein similarity
  BI856054 cDNA clone IMAGE:5392328 mammary adenocarcinoma, cell line 5' read Protein similarityPolyadenylation signal
  AA384975 cDNA clone ATCC:189136 thyroid 5' read Protein similarity
  AA126339 cDNA clone IMAGE:511466 5' read 0.8 kbProtein similarity
  BG490710 cDNA clone IMAGE:4638703 large cell carcinoma 5' read Protein similarity
  BF341611 cDNA clone IMAGE:4151744 glioblastoma with egfr amplification 5' read Protein similarity
  BI092506 cDNA clone IMAGE:4998292 placenta 5' read Protein similarity
  AV764433 cDNA clone MDSBID11 bone marrow 5' read Protein similarity
  C04906 cDNA clone 3NHC4253 heart Protein similarity
  AA305695 cDNA clone ATCC:129129 5' read Protein similarity
  W52535 cDNA clone IMAGE:326140 5' read 1.6 kb
  AA384974 cDNA clone ATCC:189136 thyroid 5' read Protein similarity
  AV697239 cDNA clone GKCENB08 hepatocellular carcinoma 5' read Protein similarity
  BF676405 cDNA clone IMAGE:4248838 prostate 5' read
  AA355468 cDNA clone ATCC:157591 5' read Protein similarity
  BG570396 cDNA clone IMAGE:4717449 lung 5' read
  AA369524 cDNA clone ATCC:174419 prostate 5' read
  BG897575 cDNA clone (no-name) cartilage
  BE868583 cDNA clone IMAGE:3849731 adenocarcinoma 5' read Protein similarity
  AA384023 cDNA clone ATCC:188190 thyroid 5' read
  BG249609 cDNA clone IMAGE:4414843 hypernephroma, cell line 5' read
  AA379550 cDNA clone ATCC:183966 skin 5' read
  AA375542 cDNA clone ATCC:180044 5' read

SENSE ESTs

  BG717613 cDNA clone IMAGE:4830414 testis, cell line 5' read Protein similarity
  AA171465 cDNA clone IMAGE:610117 5' read Protein similarity
  AU132481 cDNA clone NT2RP3004539 5' read Protein similarity
  BE514332 cDNA clone IMAGE:3634615 burkitt lymphoma 5' read Protein similarity
  BE396456 cDNA clone IMAGE:3619792 burkitt lymphoma 5' read Protein similarity
  BE542839 cDNA clone IMAGE:3453948 placenta 5' read Protein similarity
  BM012241 cDNA clone IMAGE:5459001 neuroblastoma, cell line 5' read Protein similarity
  BE258271 cDNA clone IMAGE:3356434 retinoblastoma 5' read Protein similarity
  AA134797 cDNA clone IMAGE:531991 5' read Protein similarity
  BG755293 cDNA clone IMAGE:4854153 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BE904687 cDNA clone IMAGE:3900769 epithelioid carcinoma 5' read Protein similarity
  BF338610 cDNA clone IMAGE:4182071 glioblastoma with egfr amplification 5' read Protein similarity
  BI856888 cDNA clone IMAGE:5396495 mammary adenocarcinoma, cell line 5' read Protein similarity
  AA169816 cDNA clone IMAGE:610117 3' read
  AU124796 cDNA clone NT2RM4000565 5' read
  BE049515 cDNA clone IMAGE:2835088 pancreas 3' read
  AA384593 cDNA clone ATCC:188777 thyroid 5' read
  AW958926 cDNA clone (no-name)
  AA176343 cDNA clone IMAGE:611644 muscle 3' read 0.4 kb
  AI635811 cDNA clone IMAGE:2294980 pancreas 3' read
  AA515682 cDNA clone IMAGE:979557 lung 3' read 1.3 kb
  AW080380 cDNA clone IMAGE:2611555 uterus 3' read
  AI434682 cDNA clone IMAGE:2132508 lymph 3' read 0.5 kb
  AA206550 cDNA clone IMAGE:645727 3' read
  AA515683 cDNA clone IMAGE:979559 lung 3' read 2.0 kb
  BG370172 cDNA clone IMAGE:2835088 pancreas 3' read
  AW615427 cDNA clone IMAGE:2823886 small cell carcinoma 3' read
  F18765 cDNA clone NOTAVAIL03361
  AI682883 cDNA clone IMAGE:2323910 pancreas 3' read 0.5 kb
  BI091287 cDNA clone IMAGE:4997502 placenta 5' read
  BG272708 cDNA clone IMAGE:4233093 nasopharyngeal carcinoma 3' read
  AU148588 cDNA clone NT2RM4000565 3' read Protein similarity
  BI830889 cDNA clone IMAGE:5172674 medulla 5' read
  AL038644 cDNA clone DKFZp566I1446 kidney 5' read