Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.343244
Description:adaptor-related protein complex 1, gamma 2 subunit
Best-Of-UniGene (BOU) SequenceNM_003917
Genomic Coordiantes Displayed:Bases 2846000 to 2874000 of contig Hs14_19739_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.343244.jpeg
Best sense EST/protein match:BE612506 matched gb|AAC67390.1| (AF068706) gamma2-adaptin [Homo sapiens] (E = e-101)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI284019 cDNA clone IMAGE:1960289 esophagus 3' read 1.6 kb
  AW130783 cDNA clone IMAGE:2612691 uterus 3' read Protein similarity
  AA004314 cDNA clone IMAGE:429030 pool 3' read 1.1 kb
  AA064655 cDNA clone IMAGE:525533 3' read
  AA586964 cDNA clone IMAGE:1089132 larynx 3' read 0.7 kb
  AA005185 cDNA clone IMAGE:429030 pool 5' read 1.1 kbProtein similarity
  T49401 cDNA clone IMAGE:67484 placenta 3' read 1.5 kbProtein similarity
  AW169307 cDNA clone IMAGE:2657923 uterus 3' read Protein similarity
  AW172850 cDNA clone IMAGE:2656251 uterus 3' read Protein similarity
  AL046549 cDNA clone DKFZp434G088 testis 5' read Protein similarity
  AW029584 cDNA clone IMAGE:2543589 stomach 3' read Protein similarity
  T49400 cDNA clone IMAGE:67484 placenta 5' read 1.5 kbPolyadenylation signal

SENSE ESTs

  BG701521 cDNA clone IMAGE:4815255 hippocampus, cell line 5' read Protein similarity
  BG759038 cDNA clone IMAGE:4850968 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BM048933 cDNA clone IMAGE:5452119 carcinoma, cell line 5' read
  BI825464 cDNA clone IMAGE:5164224 medulla 5' read Protein similarity
  BG756732 cDNA clone IMAGE:4850616 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BI765745 cDNA clone IMAGE:5186779 pooled colon, kidney, stomach 5' read Protein similarity
  BI823295 cDNA clone IMAGE:5180423 pooled brain, lung, testis 5' read Protein similarity
  AA344667 cDNA clone ATCC:146211 gall bladder 5' read Protein similarity
  BI333758 cDNA clone IMAGE:5141361 choriocarcinoma 5' read Protein similarity
  BI334956 cDNA clone IMAGE:5140977 choriocarcinoma 5' read Protein similarity
  BI918958 cDNA clone IMAGE:5244842 brain 5' read Protein similarity
  BI772795 cDNA clone IMAGE:5203866 pooled lung and spleen 5' read Protein similarity
  BE731477 cDNA clone IMAGE:3842562 choriocarcinoma 5' read Protein similarity
  BI767218 cDNA clone IMAGE:5207592 pooled lung and spleen 5' read Protein similarity
  BM048839 cDNA clone IMAGE:5456855 carcinoma, cell line 5' read
  BE612506 cDNA clone IMAGE:3855889 adenocarcinoma 5' read Protein similarity
  BM043389 cDNA clone IMAGE:5445440 carcinoma, cell line 5' read
  BI822381 cDNA clone IMAGE:5179042 pooled brain, lung, testis 5' read Protein similarity
  BG422958 cDNA clone IMAGE:4588474 renal cell adenocarcinoma 5' read Protein similarity
  BG253747 cDNA clone IMAGE:4474901 adenocarcinoma, cell line 5' read Protein similarity
  BE409996 cDNA clone IMAGE:3629498 choriocarcinoma 5' read Protein similarity
  BG340936 cDNA clone IMAGE:4575565 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BI915862 cDNA clone IMAGE:5248733 brain 5' read Protein similarity
  F07336 cDNA clone c22e05 brain 5' read Protein similarity
  F07827 cDNA clone c2jb11 brain 5' read Protein similarity
  H06102 cDNA clone IMAGE:44045 brain 5' read 2.2 kbProtein similarity
  AI541078 cDNA clone (no-name) Tissue culture 3' read Protein similarity
  BI117403 cDNA clone IMAGE:5016804 small cell carcinoma 5' read Protein similarity
  BI909267 cDNA clone IMAGE:5216329 leukocyte 5' read Protein similarity
  BG675239 cDNA clone IMAGE:4755007 skin 5' read Protein similarity
  BG285698 cDNA clone IMAGE:4498138 transitional cell papilloma, cell line 5' read Protein similarity
  BI524171 cDNA clone IMAGE:5201276 pooled lung and spleen 5' read Protein similarity
  BG289526 cDNA clone IMAGE:4513314 transitional cell papilloma, cell line 5' read Protein similarity
  W78996 cDNA clone IMAGE:415647 pool 5' read 1.2 kbProtein similarity
  BI117324 cDNA clone IMAGE:5016711 small cell carcinoma 5' read Protein similarity
  BG752700 cDNA clone IMAGE:4876228 normal pigmented retinal epithelium 5' read Protein similarity
  BG387688 cDNA clone IMAGE:4520748 embryonal carcinoma, cell line 5' read Protein similarity
  BE962640 cDNA clone IMAGE:3855889 adenocarcinoma 3' read Protein similarity
  D52406 cDNA clone GEN077A08 brain 5' read Protein similarity
  D53017 cDNA clone GEN094H01 brain 5' read Protein similarity
  C14634 cDNA clone GEN076H10 aorta 5' read Protein similarity
  AW272210 cDNA clone IMAGE:2800333 colon 3' read Protein similarityPolyadenylation signal
  AW167121 cDNA clone IMAGE:2633766 uterus 3' read Protein similarityPolyadenylation signal
  AW081154 cDNA clone IMAGE:2585735 moderately differentiated adenocarcinoma 3' read Protein similarityPolyadenylation signal
  AI951789 cDNA clone IMAGE:2545868 four pooled pituitary adenomas 3' read Protein similarityPolyadenylation signal
  AW272621 cDNA clone IMAGE:2800116 colon 3' read Protein similarityPolyadenylation signal
  AW079995 cDNA clone IMAGE:2612213 uterus 3' read Protein similarityPolyadenylation signal
  AA552489 cDNA clone IMAGE:1013316 colon 3' read 1.0 kbProtein similarityPolyadenylation signal
  AA610738 cDNA clone IMAGE:1142394 lung 3' read 1.7 kbProtein similarity
  AW779033 cDNA clone IMAGE:3037672 colon 3' read Protein similarity
  AI561098 cDNA clone IMAGE:2209932 uterus 3' read 1.6 kbProtein similarityPolyadenylation signal
  AI539806 cDNA clone IMAGE:2191856 uterus 3' read 2.4 kbProtein similarityPolyadenylation signal
  BI908626 cDNA clone IMAGE:5216096 leukocyte 5' read Protein similarity
  AW337388 cDNA clone IMAGE:2836481 pancreas 3' read Protein similarityPolyadenylation signal
  AI925720 cDNA clone IMAGE:2457160 stomach 3' read 0.4 kbProtein similarityPolyadenylation signal
  AI792366 cDNA clone IMAGE:1699142 kidney 5' read 0.4 kbProtein similarityPolyadenylation signal
  F34974 cDNA clone sH3000004-1/C11 muscle Protein similarity
  AI266710 cDNA clone IMAGE:1899716 kidney 3' read 0.7 kbPolyadenylation signal
  H05809 cDNA clone IMAGE:44045 brain 3' read 2.2 kbProtein similarityPolyadenylation signal
  AW190191 cDNA clone IMAGE:2676052 uterus 3' read Protein similarityPolyadenylation signal
  AI733643 cDNA clone IMAGE:1699142 kidney 3' read 0.4 kbProtein similarityPolyadenylation signal
  AA551813 cDNA clone IMAGE:1012524 colon 3' read 0.7 kbProtein similarityPolyadenylation signal
  Z40925 cDNA clone c2jb11 brain 3' read Protein similarity
  D80662 cDNA clone GEN094H01 brain 3' read Protein similarityPolyadenylation signal
  AI886679 cDNA clone IMAGE:2445798 stomach 3' read 1.9 kbPolyadenylation signal
  BI005202 cDNA clone (no-name) head_normal
  AW196167 cDNA clone IMAGE:2683334 uterus 3' read Protein similarityPolyadenylation signal
  BI005200 cDNA clone (no-name) head_normal Protein similarity
  F03587 cDNA clone c22e05 brain 3' read
  AW080757 cDNA clone IMAGE:2587858 esophagus 3' read Protein similarityPolyadenylation signal
  AL048766 cDNA clone DKFZp566M243 kidney
  W80537 cDNA clone IMAGE:415647 pool 3' read 1.2 kb
  AW150496 cDNA clone IMAGE:2631981 uterus 3' read
  AI003528 cDNA clone IMAGE:1699142 kidney 3' read Polyadenylation signal