Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.41569
Description:phosphatidic acid phosphatase type 2A
Best-Of-UniGene (BOU) SequenceNM_003711
Genomic Coordiantes Displayed:Bases 2450000 to 2590000 of contig Hs5_17020_24
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingHs.41569.jpeg
Best sense EST/protein match:AW304260 matched ref|XP_042105.1| (XM_042105) hypothetical protein XP_042105 [Homo sapiens] (E = e-108)
Best antisense EST/protein match:BF693920 matched sp|P42285|Y052_HUMAN HYPOTHETICAL PROTEIN KIAA0052 (E = 1e-11)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BI258829 cDNA clone IMAGE:5109011 choriocarcinoma 5' read Polyadenylation signal
  AI282538 cDNA clone IMAGE:1982212 lymph 3' read 1.2 kbProtein similarity
  AA132534 cDNA clone IMAGE:587439 3' read 0.5 kbProtein similarity
  AA132640 cDNA clone IMAGE:587439 5' read 0.5 kbProtein similarity
  BF672241 cDNA clone IMAGE:4291759 muscle (skeletal) 5' read
  AA598865 cDNA clone IMAGE:897963 kidney 3' read 0.3 kbPolyadenylation signal
  AI963430 cDNA clone IMAGE:2512115 pancreas 3' read Polyadenylation signal
  AA595694 cDNA clone IMAGE:1018682 neural 3' read Polyadenylation signal
  AI613226 cDNA clone IMAGE:2280916 uterus 3' read 1.7 kbProtein similarityPolyadenylation signal
  AW770148 cDNA clone IMAGE:3000877 lymph 3' read Protein similarityPolyadenylation signal
  R45479 cDNA clone IMAGE:35245 brain 3' read 2.3 kbPolyadenylation signal
  BI792823 cDNA clone (no-name) islets of langerhans 3' read Polyadenylation signal
  AV740288 cDNA clone CBDAKB03 cord blood 5' read Polyadenylation signal
  AW518537 cDNA clone IMAGE:2851677 lymph 3' read Polyadenylation signal
  AI275980 cDNA clone IMAGE:1990337 uterus 3' read 3.6 kbProtein similarityPolyadenylation signal
  AW189203 cDNA clone IMAGE:2675087 uterus 3' read
  AA216311 cDNA clone (no-name) heart 5' read
  AV746469 cDNA clone NPBABA03 pituitary 5' read
  AI687386 cDNA clone IMAGE:2207053 uterus 3' read 1.6 kbProtein similarity
  BF693920 cDNA clone IMAGE:4246821 muscle (skeletal) 5' read Protein similarity

SENSE ESTs

  BI913171 cDNA clone IMAGE:5244112 brain 5' read
  BI910890 cDNA clone IMAGE:5216775 leukocyte 5' read
  BI906487 cDNA clone IMAGE:5213360 leukocyte 5' read
  BI771954 cDNA clone IMAGE:5208307 pooled lung and spleen 5' read
  BI761588 cDNA clone IMAGE:5186681 pooled colon, kidney, stomach 5' read
  BI562349 cDNA clone IMAGE:5297856 testis, cell line 5' read Protein similarity
  BG481385 cDNA clone IMAGE:4652409 choriocarcinoma 5' read
  BG481797 cDNA clone IMAGE:4651724 choriocarcinoma 5' read Protein similarity
  BG928986 cDNA clone (no-name) cartilage Protein similarity
  BI260942 cDNA clone IMAGE:5110199 choriocarcinoma 5' read Protein similarity
  BE393767 cDNA clone IMAGE:3631827 endometrium, adenocarcinoma cell line 5' read Protein similarity
  BG715836 cDNA clone IMAGE:4797947 hypothalamus, cell line 5' read Protein similarity
  BG705922 cDNA clone IMAGE:4791849 hypothalamus, cell line 5' read Protein similarity
  BG703334 cDNA clone IMAGE:4817923 hippocampus, cell line 5' read Protein similarity
  BF966173 cDNA clone IMAGE:4375337 hippocampus, cell line 5' read Protein similarity
  BG714711 cDNA clone IMAGE:4799658 hypothalamus, cell line 5' read Protein similarity
  BG709163 cDNA clone IMAGE:4797920 hypothalamus, cell line 5' read Protein similarity
  BI461070 cDNA clone IMAGE:5272928 testis, cell line 5' read Protein similarity
  BI603630 cDNA clone IMAGE:5303626 hypothalamus, cell line 5' read Protein similarity
  BG707904 cDNA clone IMAGE:4794094 hypothalamus, cell line 5' read Protein similarity
  BI667735 cDNA clone IMAGE:5312327 hypothalamus, cell line 5' read Protein similarity
  BG705998 cDNA clone IMAGE:4791873 hypothalamus, cell line 5' read Protein similarity
  BG431059 cDNA clone IMAGE:4612195 kidney 5' read Protein similarity
  BI824382 cDNA clone IMAGE:5179298 pooled brain, lung, testis 5' read
  BI759079 cDNA clone IMAGE:5183275 pooled colon, kidney, stomach 5' read
  BI764184 cDNA clone IMAGE:5186243 pooled colon, kidney, stomach 5' read
  BI521434 cDNA clone IMAGE:5220703 pooled pancreas and spleen 5' read
  BI838180 cDNA clone IMAGE:5222735 pooled pancreas and spleen 5' read
  AA298482 cDNA clone ATCC:175001 prostate 5' read Protein similarity
  AA298485 cDNA clone ATCC:175044 prostate 5' read Protein similarity
  BI603402 cDNA clone IMAGE:5299242 hypothalamus, cell line 5' read Protein similarity
  BF965321 cDNA clone IMAGE:4356419 muscle (skeletal) 5' read Protein similarity
  BI597695 cDNA clone IMAGE:5300074 hypothalamus, cell line 5' read Protein similarity
  BI598908 cDNA clone IMAGE:5300096 hypothalamus, cell line 5' read Protein similarity
  AA298465 cDNA clone ATCC:174738 prostate 5' read Protein similarity
  BE973952 cDNA clone IMAGE:3950728 prostate 5' read Protein similarity
  AA297312 cDNA clone ATCC:134464 whole embryo 5' read Protein similarity
  BF576642 cDNA clone IMAGE:4290286 muscle (skeletal) 5' read Protein similarity
  AA296853 cDNA clone ATCC:116111 aorta 5' read Protein similarity
  AW304260 cDNA clone IMAGE:2825217 three pooled meningiomas 3' read Protein similarity
  BF681693 cDNA clone IMAGE:4296597 prostate 5' read Protein similarity
  BG617315 cDNA clone IMAGE:4733914 liver 5' read Protein similarity
  AA298488 cDNA clone ATCC:175373 prostate 5' read Protein similarity
  BG292223 cDNA clone IMAGE:4515375 transitional cell papilloma, cell line 5' read Protein similarity
  N86994 cDNA clone L1773 heart 5' read Protein similarity
  BG287597 cDNA clone IMAGE:4513420 transitional cell papilloma, cell line 5' read Protein similarity
  BG926867 cDNA clone (no-name) cartilage Protein similarity
  AI309833 cDNA clone IMAGE:1914464 kidney 3' read 1.6 kbProtein similarityPolyadenylation signal
  AI634700 cDNA clone IMAGE:2288061 uterus 3' read 1.5 kbProtein similarityPolyadenylation signal
  BF966948 cDNA clone IMAGE:4375337 hippocampus, cell line 3' read Protein similarity
  AI720446 cDNA clone IMAGE:2335169 colon 3' read Protein similarityPolyadenylation signal
  AV726926 cDNA clone HTCBHA02 hypothalamus 5' read Protein similarity
  AV729545 cDNA clone HTCBLA10 hypothalamus 5' read Protein similarity
  AI570331 cDNA clone IMAGE:2184357 stomach 3' read 0.8 kbProtein similarityPolyadenylation signal
  AA863213 cDNA clone IMAGE:1455737 kidney 3' read Polyadenylation signal
  W45106 cDNA clone IMAGE:322938 5' read 0.7 kbProtein similarity
  W45113 cDNA clone IMAGE:322960 5' read 0.7 kbProtein similarity
  AI817367 cDNA clone IMAGE:2413071 lymph 3' read 1.5 kbProtein similarityPolyadenylation signal
  AW073957 cDNA clone IMAGE:2575417 2 pooled high-grade transitional cell tumors 3' read
  C17623 cDNA clone GEN550C10 placenta 5' read Protein similarity
  BF435652 cDNA clone IMAGE:3395137 sciatic nerve 3' read Polyadenylation signal
  AI859637 cDNA clone IMAGE:2435931 uterus 3' read 1.1 kbProtein similarityPolyadenylation signal
  AW512767 cDNA clone IMAGE:2792468 uterus 3' read Polyadenylation signal
  AI954099 cDNA clone IMAGE:2549891 normal epithelium 3' read Polyadenylation signal
  AA973260 cDNA clone IMAGE:1536825 kidney 3' read 1.2 kbPolyadenylation signal
  AA541656 cDNA clone IMAGE:985025 prostate 3' read Polyadenylation signal
  AV686034 cDNA clone GKCESB03 hepatocellular carcinoma 5' read
  AI445563 cDNA clone IMAGE:2143060 pancreas 3' read 1.2 kbPolyadenylation signal
  AW513838 cDNA clone IMAGE:2707358 uterus 3' read Polyadenylation signal
  W92816 cDNA clone IMAGE:418430 pool 3' read 0.5 kb
  AI358770 cDNA clone IMAGE:2005820 pancreas 3' read 0.8 kb
  W45155 cDNA clone IMAGE:322938 3' read 0.7 kbPolyadenylation signal
  AA897703 cDNA clone IMAGE:1472554 kidney 3' read 1.3 kbPolyadenylation signal
  AW591145 cDNA clone IMAGE:2703603 uterus 3' read Polyadenylation signal
  AA581607 cDNA clone IMAGE:797536 germ cell 3' read Polyadenylation signal
  AI309214 cDNA clone IMAGE:1913873 kidney 3' read 0.8 kbPolyadenylation signal
  H17855 cDNA clone IMAGE:50171 brain 3' read 1.6 kbPolyadenylation signal
  AI872861 cDNA clone IMAGE:2441243 uterus 3' read 0.8 kbPolyadenylation signal
  AI446335 cDNA clone IMAGE:2142096 stomach 3' read 1.6 kbPolyadenylation signal
  AI682897 cDNA clone IMAGE:2323920 pancreas 3' read 1.2 kbPolyadenylation signal
  AA370546 cDNA clone ATCC:175001 prostate 3' read Polyadenylation signal
  F09779 cDNA clone c36c02 brain 3' read
  AA558593 cDNA clone IMAGE:1015932 germ cell 3' read Polyadenylation signal
  BI763518 cDNA clone IMAGE:5190346 pooled colon, kidney, stomach 5' read Polyadenylation signal
  F09873 cDNA clone c37e11 brain 3' read Polyadenylation signal
  AW084433 cDNA clone IMAGE:2588465 esophagus 3' read Polyadenylation signal
  AI783999 cDNA clone IMAGE:2176926 uterus 3' read 1.6 kbPolyadenylation signal
  AA370510 cDNA clone ATCC:175044 prostate 3' read Polyadenylation signal