Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.5719
Description:chromosome condensation-related SMC-associated protein 1
Best-Of-UniGene (BOU) SequenceNM_014865
Genomic Coordiantes Displayed:Bases 570000 to 640000 of contig Hs12_9888_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.5719.jpeg
Best sense EST/protein match:AL135123 matched ref|NP_055680.1| (NM_014865) chromosome condensation-related SMC-associated protein (E = e-128)
Best antisense EST/protein match:BE385728 matched ref|XP_033273.1| (XM_033273) mitochondrial ribosomal protein 64 [Homo sapiens] (E = 2e-57)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AA206113 cDNA clone IMAGE:645274 5' read
  BE739463 cDNA clone IMAGE:3826216 hypernephroma 3' read
  BE739128 cDNA clone IMAGE:3826216 hypernephroma 5' read
  AI590753 cDNA clone IMAGE:2260045 tumor, 5 pooled (see description) 3' read Protein similarity
  AA206114 cDNA clone IMAGE:645274 3' read Protein similarity
  AA160750 cDNA clone IMAGE:591435 3' read 3.5 kbProtein similarity
  BI754944 cDNA clone IMAGE:5196971 brain 5' read
  BI459943 cDNA clone IMAGE:5267363 testis, cell line 5' read
  BF027226 cDNA clone IMAGE:3955468 melanotic melanoma 5' read
  BE281458 cDNA clone IMAGE:3138669 choriocarcinoma 5' read Protein similarity
  BE559524 cDNA clone IMAGE:3677872 burkitt lymphoma 5' read Protein similarity
  BF309104 cDNA clone IMAGE:4131698 rhabdomyosarcoma 5' read
  BG502561 cDNA clone IMAGE:4656955 embryonal carcinoma 5' read
  BG281778 cDNA clone IMAGE:4544734 melanotic melanoma 5' read
  BE385728 cDNA clone IMAGE:3617221 melanotic melanoma 5' read Protein similarity
  BE549139 cDNA clone IMAGE:3462108 choriocarcinoma 5' read
  BI908899 cDNA clone IMAGE:5215583 leukocyte 5' read

SENSE ESTs

  AI921350 cDNA clone IMAGE:2456208 pancreas 3' read Protein similarityPolyadenylation signal
  BI857521 cDNA clone IMAGE:5393256 mammary adenocarcinoma, cell line 5' read
  BF207288 cDNA clone IMAGE:4100754 neuroblastoma 5' read Protein similarityPolyadenylation signal
  AU153521 cDNA clone NT2RP3003362 3' read
  BE537693 cDNA clone IMAGE:3451687 placenta 5' read
  AA070120 cDNA clone IMAGE:530709 3' read 3.9 kbPolyadenylation signal
  AA070483 cDNA clone IMAGE:531002 3' read 1.6 kbPolyadenylation signal
  AI912867 cDNA clone IMAGE:2289111 uterus 3' read 1.0 kbPolyadenylation signal
  AW183136 cDNA clone IMAGE:2633303 uterus 3' read Polyadenylation signal
  AI986257 cDNA clone IMAGE:2494146 uterus 3' read 1.0 kbPolyadenylation signal
  AU152824 cDNA clone NT2RP3001773 3' read Polyadenylation signal
  BE260841 cDNA clone IMAGE:3507628 neuroblastoma 5' read
  AU151031 cDNA clone NT2RP2004233 3' read Polyadenylation signal
  AW615441 cDNA clone IMAGE:2823891 small cell carcinoma 3' read Protein similarityPolyadenylation signal
  AW516982 cDNA clone IMAGE:2749773 uterus 3' read Polyadenylation signal
  AA102662 cDNA clone IMAGE:563811 3' read 2.6 kbPolyadenylation signal
  AA365480 cDNA clone ATCC:170207 brain 3' read Polyadenylation signal
  AA826737 cDNA clone IMAGE:1174785 prostate 3' read 0.6 kbPolyadenylation signal
  AI432795 cDNA clone IMAGE:2121162 lymph 3' read 1.0 kbPolyadenylation signal
  AI433487 cDNA clone IMAGE:2134155 lymph 3' read 1.2 kbPolyadenylation signal
  AI581119 cDNA clone IMAGE:2154655 colon 3' read 1.9 kbPolyadenylation signal
  AI678405 cDNA clone IMAGE:2257510 stomach 3' read 0.6 kbPolyadenylation signal
  AI697352 cDNA clone IMAGE:2209145 uterus 3' read 1.0 kbProtein similarityPolyadenylation signal
  AU154339 cDNA clone NT2RP4000829 3' read Protein similarityPolyadenylation signal
  AI886725 cDNA clone IMAGE:2412788 lymph 3' read 1.6 kbPolyadenylation signal
  AA091439 cDNA clone (no-name) heart 5' read
  R50795 cDNA clone IMAGE:38736 brain 3' read 1.7 kbPolyadenylation signal
  AU153843 cDNA clone NT2RP3004160 3' read Polyadenylation signal
  AA121386 cDNA clone IMAGE:564227 3' read 2.9 kbPolyadenylation signal
  AU158382 cDNA clone PLACE2000186 placenta 3' read Polyadenylation signal
  AU158758 cDNA clone PLACE4000566 placenta 3' read Polyadenylation signal
  AU152717 cDNA clone NT2RP3001519 3' read Protein similarity
  AI961471 cDNA clone IMAGE:2508279 uterus 3' read
  BG676485 cDNA clone IMAGE:4747834 squamous cell carcinoma 5' read
  AW770309 cDNA clone IMAGE:3007299 2 pooled wilms' tumors, one primary and one metastatic to 3' read Protein similarity
  AU149150 cDNA clone NT2RM4001700 3' read Protein similarity
  AW591176 cDNA clone IMAGE:2703695 uterus 3' read Protein similarity
  AW130985 cDNA clone IMAGE:2613017 uterus 3' read
  AU150019 cDNA clone NT2RP2001282 3' read
  BG030282 cDNA clone IMAGE:4391925 mammary adenocarcinoma, cell line 5' read Protein similarity
  BG685628 cDNA clone IMAGE:4765418 primary b-cells from tonsils (cell line) 5' read
  BE563356 cDNA clone IMAGE:3688788 adenocarcinoma 5' read Protein similarity
  AU149487 cDNA clone NT2RM4002421 3' read
  AU160814 cDNA clone Y79AA1002465 3' read
  AU148830 cDNA clone NT2RM4001035 3' read
  AI686555 cDNA clone IMAGE:2268565 uterus 3' read 4.0 kbProtein similarity
  BE734457 cDNA clone IMAGE:3841088 choriocarcinoma 5' read Protein similarity
  AU151116 cDNA clone NT2RP2004416 3' read Protein similarity
  BF314355 cDNA clone IMAGE:4130185 neuroblastoma 5' read
  AI689376 cDNA clone IMAGE:2276145 uterus 3' read 1.6 kbProtein similarity
  BE617498 cDNA clone IMAGE:3846254 adenocarcinoma 5' read Protein similarity
  BI868623 cDNA clone IMAGE:5402411 adenocarcinoma, cell line 5' read Protein similarity
  BM051212 cDNA clone IMAGE:5424758 normal pigmented retinal epithelium 5' read
  AI817374 cDNA clone IMAGE:2413092 lymph 3' read 0.4 kbProtein similarity
  BM013099 cDNA clone IMAGE:5460201 neuroblastoma, cell line 5' read
  BE732894 cDNA clone IMAGE:3842862 choriocarcinoma 5' read Protein similarity
  BG676172 cDNA clone IMAGE:4747648 squamous cell carcinoma 5' read Protein similarity
  AU148653 cDNA clone NT2RM4000672 3' read
  AU149299 cDNA clone NT2RM4002024 3' read
  AA173259 cDNA clone IMAGE:611162 3' read 2.4 kbProtein similarity
  BE793681 cDNA clone IMAGE:3944129 small cell carcinoma 5' read Protein similarity
  BG252909 cDNA clone IMAGE:4473506 adenocarcinoma, cell line 5' read Protein similarity
  AL040386 cDNA clone DKFZp434A1514 testis 5' read Protein similarity
  BG259879 cDNA clone IMAGE:4479801 transitional cell papilloma, cell line 5' read Protein similarity
  AU153749 cDNA clone NT2RP3003917 3' read Protein similarity
  BG824695 cDNA clone IMAGE:4866352 adenocarcinoma cell line 5' read Protein similarity
  AU149271 cDNA clone NT2RM4001973 3' read
  BG744595 cDNA clone IMAGE:4849288 natural killer cells, cell line 3' read Protein similarity
  AW770377 cDNA clone IMAGE:3007504 2 pooled wilms' tumors, one primary and one metastatic to 3' read Protein similarity
  AA232428 cDNA clone IMAGE:664671 3' read 1.6 kbProtein similarity
  AU150590 cDNA clone NT2RP2003135 3' read Protein similarity
  AU152669 cDNA clone NT2RP3001410 3' read Protein similarity
  BM017255 cDNA clone IMAGE:5425443 astrocytoma grade iv, cell line 5' read Protein similarity
  AA099079 cDNA clone IMAGE:510618 3' read 0.8 kbProtein similarity
  BG388567 cDNA clone IMAGE:4522133 embryonal carcinoma, cell line 5' read Protein similarity
  BG106329 cDNA clone IMAGE:4384559 lymphoma, cell line 5' read Protein similarity
  BF968150 cDNA clone IMAGE:4357449 adrenal cortex carcinoma, cell line 5' read Protein similarity
  BE514859 cDNA clone IMAGE:3659616 adenocarcinoma cell line 5' read Protein similarity
  BG291239 cDNA clone IMAGE:4517589 transitional cell papilloma, cell line 5' read Protein similarity
  BG283960 cDNA clone IMAGE:4519976 adenocarcinoma, cell line 5' read Protein similarity
  BG773708 cDNA clone IMAGE:4810265 choriocarcinoma 5' read Protein similarity
  BF982764 cDNA clone IMAGE:4396364 duodenal adenocarcinoma, cell line 5' read Protein similarity
  AA099078 cDNA clone IMAGE:510618 5' read 0.8 kbProtein similarity
  BI261026 cDNA clone IMAGE:5111474 choriocarcinoma 5' read Protein similarity
  BG828695 cDNA clone IMAGE:4905353 rhabdomyosarcoma 5' read Protein similarity
  BE261617 cDNA clone IMAGE:3501814 neuroblastoma 5' read Protein similarity
  BM015568 cDNA clone IMAGE:5417902 mammary adenocarcinoma, cell line 5' read Protein similarity
  BI870602 cDNA clone IMAGE:5404269 adenocarcinoma, cell line 5' read Protein similarity
  AA345804 cDNA clone ATCC:147333 gall bladder 5' read Protein similarity
  BE744979 cDNA clone IMAGE:3837444 adenocarcinoma cell line 5' read Protein similarity
  BE741673 cDNA clone IMAGE:3948559 adenocarcinoma cell line 5' read Protein similarity
  BG336537 cDNA clone IMAGE:4543017 choriocarcinoma 5' read Protein similarity
  BI224339 cDNA clone IMAGE:5103689 choriocarcinoma 5' read Protein similarity
  BF315884 cDNA clone IMAGE:4125336 neuroblastoma 5' read Protein similarity
  BE867842 cDNA clone IMAGE:3847875 adenocarcinoma 5' read Protein similarity
  BF315937 cDNA clone IMAGE:4125212 neuroblastoma 5' read Protein similarity
  BG035868 cDNA clone IMAGE:4414024 adenocarcinoma, cell line 5' read Protein similarity
  R50913 cDNA clone IMAGE:38736 brain 5' read 1.7 kbProtein similarity
  BM050401 cDNA clone IMAGE:5423173 normal pigmented retinal epithelium 5' read
  BE261256 cDNA clone IMAGE:3162932 neuroblastoma 5' read Protein similarity
  BI094180 cDNA clone IMAGE:4999139 placenta 5' read Protein similarity
  BG290707 cDNA clone IMAGE:4517953 transitional cell papilloma, cell line 5' read Protein similarity
  BE746435 cDNA clone IMAGE:3928217 adenocarcinoma cell line 5' read Protein similarity
  AU123763 cDNA clone NT2RM2000991 5' read Protein similarity
  BE313937 cDNA clone IMAGE:3162655 neuroblastoma 5' read Protein similarity
  BE741319 cDNA clone IMAGE:3947918 adenocarcinoma cell line 5' read Protein similarity
  BG167290 cDNA clone IMAGE:4452548 hypernephroma, cell line 5' read Protein similarity
  BE746432 cDNA clone IMAGE:3928407 adenocarcinoma cell line 5' read Protein similarity
  BG423278 cDNA clone IMAGE:4588897 renal cell adenocarcinoma 5' read Protein similarity
  BG419366 cDNA clone IMAGE:4584779 renal cell adenocarcinoma 5' read Protein similarity
  BI090980 cDNA clone IMAGE:4995153 placenta 5' read Protein similarity
  BE264923 cDNA clone IMAGE:3537751 small cell carcinoma 5' read Protein similarity
  BI089787 cDNA clone IMAGE:4996180 placenta 5' read Protein similarity
  AA224263 cDNA clone IMAGE:663446 5' read Protein similarity
  BE265017 cDNA clone IMAGE:3537728 small cell carcinoma 5' read Protein similarity
  BE745286 cDNA clone IMAGE:3835119 adenocarcinoma cell line 5' read Protein similarity
  BE535232 cDNA clone IMAGE:3445451 placenta 5' read Protein similarity
  BG258957 cDNA clone IMAGE:4509593 embryonal carcinoma, cell line 5' read Protein similarity
  BM011600 cDNA clone IMAGE:5458321 neuroblastoma, cell line 5' read Protein similarity
  BG743909 cDNA clone IMAGE:4849288 natural killer cells, cell line 5' read Protein similarity
  BE314308 cDNA clone IMAGE:3508429 neuroblastoma 5' read Protein similarity
  BF309388 cDNA clone IMAGE:4124009 rhabdomyosarcoma 5' read Protein similarity
  BM005807 cDNA clone IMAGE:5433153 hepatocellular carcinoma, cell line 5' read
  BG759503 cDNA clone IMAGE:4852479 primary b-cells from tonsils (cell line) 5' read
  BG256281 cDNA clone IMAGE:4476544 adenocarcinoma, cell line 5' read Protein similarity
  BE264333 cDNA clone IMAGE:3534160 small cell carcinoma 5' read Protein similarity
  AU123537 cDNA clone NT2RM2000503 5' read Protein similarity
  BG403717 cDNA clone IMAGE:4526675 transitional cell papilloma, cell line 5' read Protein similarity
  BE253872 cDNA clone IMAGE:3353651 retinoblastoma 5' read Protein similarity
  BM016410 cDNA clone IMAGE:5417282 mammary adenocarcinoma, cell line 5' read
  AU130832 cDNA clone NT2RP3001519 5' read Protein similarity
  BE742332 cDNA clone IMAGE:3836489 adenocarcinoma cell line 5' read Protein similarity
  BG826009 cDNA clone IMAGE:4900891 rhabdomyosarcoma 5' read
  BI200128 cDNA clone IMAGE:4898193 neuroblastoma 5' read
  BE251664 cDNA clone IMAGE:3350692 retinoblastoma 5' read Protein similarity
  AA232427 cDNA clone IMAGE:664671 5' read 1.6 kbProtein similarity
  BG419073 cDNA clone IMAGE:4584937 renal cell adenocarcinoma 5' read
  BM011525 cDNA clone IMAGE:5458172 neuroblastoma, cell line 5' read Protein similarity
  AU128282 cDNA clone NT2RP2003135 5' read
  BE799412 cDNA clone IMAGE:3945782 small cell carcinoma 5' read
  BG328873 cDNA clone IMAGE:4547523 adenocarcinoma cell line 5' read
  AU125506 cDNA clone NT2RM4001700 5' read
  AA353561 cDNA clone ATCC:153786 5' read Protein similarity
  BG752443 cDNA clone IMAGE:4874719 normal pigmented retinal epithelium 5' read
  BI118183 cDNA clone IMAGE:5015872 small cell carcinoma 5' read
  AU128797 cDNA clone NT2RP2004233 5' read Protein similarity
  BE872895 cDNA clone IMAGE:3854773 adenocarcinoma 5' read
  BG575923 cDNA clone IMAGE:4707157 mammary adenocarcinoma, cell line 5' read Protein similarity
  AU124873 cDNA clone NT2RM4000672 5' read Protein similarity
  AU132163 cDNA clone NT2RP3003917 5' read Protein similarity
  BE314265 cDNA clone IMAGE:3509010 neuroblastoma 5' read Protein similarity
  AU124389 cDNA clone NT2RM2002116 5' read Protein similarity
  BE883590 cDNA clone IMAGE:3909711 leiomyosarcoma 5' read Protein similarity
  BE746577 cDNA clone IMAGE:3928956 adenocarcinoma cell line 5' read
  AU125097 cDNA clone NT2RM4001035 5' read Protein similarity
  AL135497 cDNA clone DKFZp762H1916 melanoma (mewo cell line) 5' read
  BE745428 cDNA clone IMAGE:3927043 adenocarcinoma cell line 5' read Protein similarity
  AU125924 cDNA clone NT2RM4002421 5' read Protein similarity
  BE292825 cDNA clone IMAGE:2988219 adenocarcinoma cell line 5' read Protein similarity
  BE539317 cDNA clone IMAGE:3451586 placenta 5' read Protein similarity
  AU125691 cDNA clone NT2RM4002024 5' read Protein similarity
  AU126606 cDNA clone NT2RP1001273 5' read Protein similarity
  AU130773 cDNA clone NT2RP3001410 5' read Protein similarity
  BE886372 cDNA clone IMAGE:3911296 leiomyosarcoma 5' read Protein similarity
  AU128252 cDNA clone NT2RP2003079 5' read Protein similarity
  BF303624 cDNA clone IMAGE:4120502 rhabdomyosarcoma 5' read
  BE304530 cDNA clone IMAGE:2988114 adenocarcinoma cell line 5' read Protein similarity
  AA121581 cDNA clone IMAGE:564227 5' read 2.9 kbProtein similarity
  BG468763 cDNA clone IMAGE:4644428 adenocarcinoma cell line 5' read Protein similarity
  AU126607 cDNA clone NT2RP1001274 5' read Protein similarity
  BE889506 cDNA clone IMAGE:3913827 leiomyosarcoma 5' read Protein similarity
  AA173211 cDNA clone IMAGE:611162 5' read 2.4 kbProtein similarity
  BI090396 cDNA clone IMAGE:4997172 placenta 5' read Protein similarity
  AU127436 cDNA clone NT2RP2001282 5' read Protein similarity
  BE019901 cDNA clone IMAGE:3030036 adenocarcinoma cell line 5' read Protein similarity
  BG257898 cDNA clone IMAGE:4510326 embryonal carcinoma, cell line 5' read Protein similarity
  AA101223 cDNA clone IMAGE:563811 5' read 2.6 kbProtein similarity
  BG468610 cDNA clone IMAGE:4644553 adenocarcinoma cell line 5' read
  BE273494 cDNA clone IMAGE:3507314 renal cell adenocarcinoma 5' read Protein similarity
  BE795533 cDNA clone IMAGE:3946324 small cell carcinoma 5' read
  BF972127 cDNA clone IMAGE:4328824 leiomyosarcoma cell line 5' read Protein similarity
  AU130973 cDNA clone NT2RP3001773 5' read Protein similarity
  AU132893 cDNA clone NT2RP4000829 5' read
  BG386082 cDNA clone IMAGE:4583677 adenocarcinoma cell line 5' read
  BE869441 cDNA clone IMAGE:3849286 adenocarcinoma 5' read
  AU125659 cDNA clone NT2RM4001973 5' read
  AA070560 cDNA clone IMAGE:531002 5' read 1.6 kbProtein similarity
  BE873307 cDNA clone IMAGE:3854150 adenocarcinoma 5' read
  AL134645 cDNA clone DKFZp547H076 brain 5' read Protein similarity
  AU123621 cDNA clone NT2RM2000654 5' read Protein similarity
  BE867691 cDNA clone IMAGE:3847451 adenocarcinoma 5' read Protein similarity
  BG479173 cDNA clone IMAGE:4649993 choriocarcinoma 5' read
  AU128136 cDNA clone NT2RP2002806 5' read Protein similarity
  AU140240 cDNA clone PLACE2000186 placenta 5' read Protein similarity
  BE315401 cDNA clone IMAGE:3140692 adenocarcinoma cell line 5' read Protein similarity
  AU132292 cDNA clone NT2RP3004160 5' read Protein similarity
  BE742165 cDNA clone IMAGE:3836558 adenocarcinoma cell line 5' read Protein similarity
  AL135123 cDNA clone DKFZp762H0712 melanoma (mewo cell line) 5' read Protein similarity
  BG822951 cDNA clone IMAGE:4867166 adenocarcinoma cell line 5' read Protein similarity
  BF794163 cDNA clone IMAGE:4338731 lymphoma, cell line 5' read Protein similarity
  BE882857 cDNA clone IMAGE:3910767 leiomyosarcoma 5' read Protein similarity
  BG393448 cDNA clone IMAGE:4540682 embryonal carcinoma, cell line 5' read
  AU140962 cDNA clone PLACE4000566 placenta 5' read
  BI860686 cDNA clone IMAGE:5395775 mammary adenocarcinoma, cell line 5' read Protein similarity
  AU128894 cDNA clone NT2RP2004416 5' read Protein similarity
  AU143770 cDNA clone Y79AA1002465 5' read
  BE781798 cDNA clone IMAGE:3873120 retinoblastoma 5' read
  AU131858 cDNA clone NT2RP3003362 5' read
  AU122942 cDNA clone NT2RM1000314 5' read
  AU133845 cDNA clone OVARC1000762 ovary, tumor tissue 5' read
  BG391856 cDNA clone IMAGE:4537552 embryonal carcinoma, cell line 5' read
  BI335319 cDNA clone IMAGE:5140378 choriocarcinoma 5' read
  BE878000 cDNA clone IMAGE:3892002 large cell carcinoma, undifferentiated 5' read
  BG176811 cDNA clone IMAGE:4419375 lymphoma, cell line 5' read
  BI460998 cDNA clone IMAGE:5270627 testis, cell line 5' read