Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Hs.91728
Description:polymyositis/scleroderma autoantigen 1 (75kD)
Best-Of-UniGene (BOU) SequenceNM_005033
Genomic Coordiantes Displayed:Bases 291000 to 319000 of contig Hs4_22911_24
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingHs.91728.jpeg
Best sense EST/protein match:AU117956 matched ref|NP_062266.1| (NM_019393) polymyositis/scleroderma autoantigen 1 [Mus musculus] (E = e-134)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BG289559 cDNA clone IMAGE:4499186 transitional cell papilloma, cell line 5' read
  BG288826 cDNA clone IMAGE:4516887 transitional cell papilloma, cell line 5' read
  BI224482 cDNA clone IMAGE:5103758 choriocarcinoma 5' read Protein similarity
  BI860848 cDNA clone IMAGE:5399806 mammary adenocarcinoma, cell line 5' read Protein similarity
  BI258588 cDNA clone IMAGE:5109290 choriocarcinoma 5' read
  BE868903 cDNA clone IMAGE:3850210 adenocarcinoma 5' read
  AW467627 cDNA clone IMAGE:2919779 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read Protein similarityPolyadenylation signal
  AI954236 cDNA clone IMAGE:2551321 malignant melanoma, metastatic to lymph node 3' read Polyadenylation signal
  AW410228 cDNA clone IMAGE:2961440 rhabdomyosarcoma 3' read Protein similarityPolyadenylation signal
  AA580641 cDNA clone IMAGE:797135 germ cell 3' read Polyadenylation signal
  BE221058 cDNA clone IMAGE:3170646 malignant melanoma, metastatic to lymph node 3' read Polyadenylation signal
  AI469489 cDNA clone IMAGE:2156972 colon 3' read 1.4 kbPolyadenylation signal
  AI355784 cDNA clone IMAGE:1962950 colon 3' read Polyadenylation signal
  AW516474 cDNA clone IMAGE:2791681 uterus 3' read Polyadenylation signal
  R43728 cDNA clone IMAGE:32811 brain 3' read 2.0 kbPolyadenylation signal
  BG284210 cDNA clone IMAGE:4520582 adenocarcinoma, cell line 5' read Protein similarity
  BE893931 cDNA clone IMAGE:3922752 melanotic melanoma 5' read Protein similarity
  AV688610 cDNA clone GKCACA03 hepatocellular carcinoma 5' read Protein similarity
  AV698458 cDNA clone GKCADF10 hepatocellular carcinoma 5' read Protein similarity

SENSE ESTs

  AA737966 cDNA clone IMAGE:1255783 germ cell 3' read 1.0 kbProtein similarityPolyadenylation signal
  AI718533 cDNA clone IMAGE:2319967 aorta 3' read Polyadenylation signal
  AI281615 cDNA clone IMAGE:1968985 lymph 3' read 1.0 kbProtein similarityPolyadenylation signal
  BE379606 cDNA clone IMAGE:3510947 carcinoma, cell line 3' read Protein similarity
  AI061223 cDNA clone IMAGE:1700373 kidney 3' read Protein similarityPolyadenylation signal
  AI309188 cDNA clone IMAGE:1913852 kidney 3' read 1.1 kbProtein similarityPolyadenylation signal
  AW337847 cDNA clone IMAGE:2918708 myeloid cells, 18 pooled cml cases, bcr/abl rearrangement 3' read Protein similarity
  AU144642 cDNA clone HEMBA1002570 whole embryo, mainly head 3' read Protein similarityPolyadenylation signal
  AW190075 cDNA clone IMAGE:2675958 uterus 3' read Protein similarityPolyadenylation signal
  BI224908 cDNA clone IMAGE:5093720 burkitt lymphoma 5' read Protein similarity
  BI224759 cDNA clone IMAGE:5093981 burkitt lymphoma 5' read Protein similarity
  BE896672 cDNA clone IMAGE:3924935 melanotic melanoma 5' read Protein similarity
  BE778611 cDNA clone IMAGE:3869196 retinoblastoma 5' read Protein similarity
  AW169645 cDNA clone IMAGE:2658736 uterus 3' read Protein similarity
  AW169679 cDNA clone IMAGE:2658784 uterus 3' read Protein similarity
  BG498394 cDNA clone IMAGE:4666273 adenocarcinoma 5' read Protein similarity
  BI090775 cDNA clone IMAGE:4996915 placenta 5' read Protein similarity
  BG493116 cDNA clone IMAGE:4660223 mucoepidermoid carcinoma 5' read Protein similarity
  AU117956 cDNA clone HEMBA1002570 whole embryo, mainly head 5' read Protein similarity
  BG480924 cDNA clone IMAGE:4653234 choriocarcinoma 5' read Protein similarity
  AV711417 cDNA clone CuAALF09 adrenal cortico adenoma for cushing's syndrome 5' read Protein similarity
  BG824935 cDNA clone IMAGE:4900407 rhabdomyosarcoma 5' read Protein similarity
  BG758213 cDNA clone IMAGE:4852797 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BG717097 cDNA clone IMAGE:4821499 testis, cell line 5' read Protein similarity
  BG502714 cDNA clone IMAGE:4657644 embryonal carcinoma 5' read Protein similarity
  BF664334 cDNA clone IMAGE:4309700 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BE380030 cDNA clone IMAGE:3510947 carcinoma, cell line 5' read Protein similarity
  BI830420 cDNA clone IMAGE:5165202 medulla 5' read Protein similarity
  BE787276 cDNA clone IMAGE:3879930 large cell carcinoma 5' read Protein similarity
  BG341542 cDNA clone IMAGE:4576738 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BE545876 cDNA clone IMAGE:3458012 choriocarcinoma 5' read Protein similarity
  BF974787 cDNA clone IMAGE:4336593 primary b-cells from tonsils (cell line) 5' read Protein similarity
  BE253559 cDNA clone IMAGE:3344610 retinoblastoma 5' read Protein similarity
  BF204951 cDNA clone IMAGE:4106848 rhabdomyosarcoma 5' read Protein similarity
  BE566238 cDNA clone IMAGE:3681309 carcinoma, cell line 5' read Protein similarity
  BE258151 cDNA clone IMAGE:3355434 retinoblastoma 5' read Protein similarity
  BF184155 cDNA clone IMAGE:4064063 from chronic myelogenous leukemia 5' read Protein similarity
  BF185926 cDNA clone IMAGE:4040965 glioblastoma 5' read Protein similarity
  BF342827 cDNA clone IMAGE:4150562 glioblastoma with egfr amplification 5' read Protein similarity
  BG474511 cDNA clone IMAGE:4648912 retinoblastoma 5' read Protein similarity
  AV760077 cDNA clone MDSDGB03 bone marrow 5' read Protein similarity
  BF694042 cDNA clone IMAGE:4246930 muscle (skeletal) 5' read Protein similarity
  BF213313 cDNA clone IMAGE:4070382 from acute myelogenous leukemia 5' read Protein similarity
  BF035135 cDNA clone IMAGE:3857798 adenocarcinoma 5' read Protein similarity
  BF669203 cDNA clone IMAGE:4276912 primitive neuroectoderm 5' read Protein similarity
  BG497448 cDNA clone IMAGE:4073545 adenocarcinoma 5' read Protein similarity
  BF668741 cDNA clone IMAGE:4279588 primitive neuroectoderm 5' read Protein similarity
  AA316393 cDNA clone ATCC:112877 5' read Protein similarity
  AW630002 cDNA clone IMAGE:2968494 2 pooled high-grade transitional cell tumors 5' read Protein similarity
  BF214431 cDNA clone IMAGE:4076783 from acute myelogenous leukemia 5' read Protein similarity
  AV762817 cDNA clone MDSBCC12 bone marrow 5' read Protein similarity
  BF210068 cDNA clone IMAGE:4101083 from chronic myelogenous leukemia 5' read Protein similarity
  AA316659 cDNA clone ATCC:113537 5' read Protein similarity
  AA306465 cDNA clone ATCC:160585 5' read Protein similarity
  D55565 cDNA clone GEN182F04 brain 5' read Protein similarity