Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.19015
Description:serine racemase
Best-Of-UniGene (BOU) SequenceNM_013761
Genomic Coordiantes Displayed:Bases 6510800 to 6549587 of contig GA_x5J8B7W3YLM
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingMm.19015.jpeg
Best sense EST/protein match:BF163794 matched ref|NP_038789.1| (NM_013761) serine racemase [Mus musculus] (E = e-100)
Best antisense EST/protein match:BI456649 matched ref|XP_029465.1| (XM_029465) hypothetical protein FLJ10534 [Homo sapiens] (E = e-125)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI505765 cDNA clone IMAGE:906096 embryo 3' read Polyadenylation signal
  AW228098 cDNA clone IMAGE:2654224 tumor, gross tissue 3' read Protein similarityPolyadenylation signal
  AW324374 cDNA clone IMAGE:2616212 infiltrating ductal carcinoma 3' read Polyadenylation signal
  BE225602 cDNA clone (no-name) pancreatic bud 3' read Protein similarityPolyadenylation signal
  BF226549 cDNA clone IMAGE:3668808 tumor, gross tissue 3' read Protein similarityPolyadenylation signal
  BF228294 cDNA clone IMAGE:3671725 infiltrating ductal carcinoma 3' read Protein similarityPolyadenylation signal
  AW554118 cDNA clone L0236B01 3' read Protein similarityPolyadenylation signal
  BE851765 cDNA clone IMAGE:3416864 spleen 3' read Protein similarityPolyadenylation signal
  AV285912 cDNA clone 5031415G16 ovary and uterus
  AV286361 cDNA clone 5031421N22 ovary and uterus
  BG064138 cDNA clone H3015H09 3' read Protein similarityPolyadenylation signal
  AW543466 cDNA clone C0170C01 3' read Protein similarityPolyadenylation signal
  BG143349 cDNA clone (no-name) total pancreas 3' read Protein similarity
  AA833469 cDNA clone IMAGE:1432975 uterus 5' read Protein similarity
  BE850349 cDNA clone IMAGE:3416864 spleen 5' read Protein similarity
  AA041833 cDNA clone IMAGE:475452 embryo 5' read Protein similarity
  AA032965 cDNA clone IMAGE:464586 embryo 5' read Protein similarity
  W89934 cDNA clone IMAGE:420358 embryo 5' read Protein similarity
  BG095098 cDNA clone IMAGE:4000983 spleen 5' read
  BG695105 cDNA clone IMAGE:4317427 pituitary gland 5' read Protein similarity
  BI327934 cDNA clone IMAGE:5132219 liver 5' read Protein similarity
  BF165919 cDNA clone IMAGE:4018332 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AA509764 cDNA clone IMAGE:890605 mammary gland 5' read Protein similarity
  BE226037 cDNA clone (no-name) pancreatic bud 5' read Protein similarity
  BF160682 cDNA clone IMAGE:3987979 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BG077483 cDNA clone H3015H09 5' read Protein similarity
  BI081469 cDNA clone IMAGE:5011534 tumor, biopsy sample 5' read Protein similarity
  AA210414 cDNA clone IMAGE:560366 embryo 5' read Protein similarity
  AA288883 cDNA clone IMAGE:600203 embryo 5' read Protein similarity
  BI456649 cDNA clone IMAGE:5251661 tumor, gross tissue 5' read Protein similarity
  BI652837 cDNA clone IMAGE:5339152 tumor, gross tissue 5' read Protein similarity
  BI714274 cDNA clone (no-name) pancreas 5' read Protein similarity
  BI986837 cDNA clone (no-name) neural retina
  BE371335 cDNA clone IMAGE:3592060 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AA529719 cDNA clone IMAGE:906096 embryo 5' read
  D77282 cDNA clone A0G10 embryonal carcinoma
  AA105000 cDNA clone IMAGE:533404 macrophage 5' read Protein similarity
  BI647385 cDNA clone IMAGE:5319874 tumor, gross tissue 5' read Protein similarity
  BF167661 cDNA clone IMAGE:3994243 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BG922047 cDNA clone IMAGE:4950904 infiltrating ductal carcinoma 5' read
  AL117749 cDNA clone 528_9L7 dissected endoderm 5' read Protein similarity
  BE281706 cDNA clone IMAGE:3492240 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AL035020 cDNA clone 528_9L7 dissected endoderm 5' read
  BF140576 cDNA clone IMAGE:4014819 tumor, metastatic to mammary 5' read Protein similarity
  BI684654 cDNA clone IMAGE:5342922 infiltrating ductal carcinoma 5' read Protein similarity
  BI693621 cDNA clone IMAGE:5370458 tumor, biopsy sample 5' read Protein similarity
  BG804695 cDNA clone (no-name) neural retina
  BG142881 cDNA clone (no-name) total pancreas 5' read Protein similarity
  AI451794 cDNA clone IMAGE:679648 liver 5' read
  BG270486 cDNA clone (no-name) total pancreas 5' read Protein similarity
  AI788009 cDNA clone IMAGE:2087695 embryo 5' read
  BF225053 cDNA clone IMAGE:3671725 infiltrating ductal carcinoma 5' read
  AA245099 cDNA clone IMAGE:679648 liver 5' read

SENSE ESTs

  AI931615 cDNA clone IMAGE:2136009 kidney 5' read Protein similarity
  BF532321 cDNA clone IMAGE:4210140 liver 5' read Protein similarity
  BB609829 cDNA clone 1190028F16 5' read Protein similarity
  AI173393 cDNA clone IMAGE:1498506 embryo 5' read Protein similarity
  AW211242 cDNA clone IMAGE:2099735 kidney 5' read Protein similarity
  AI892010 cDNA clone IMAGE:2123223 kidney 5' read Protein similarity
  AW319255 cDNA clone IMAGE:2331849 kidney 5' read Protein similarity
  AI789215 cDNA clone IMAGE:1972619 kidney 5' read Protein similarity
  AA170919 cDNA clone IMAGE:615391 embryo 5' read Protein similarity
  BF384769 cDNA clone IMAGE:4195695 liver 5' read Protein similarity
  BI332919 cDNA clone IMAGE:5136694 liver 5' read Protein similarity
  BF163794 cDNA clone IMAGE:3988873 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BE380996 cDNA clone IMAGE:3600657 tumor, biopsy sample 5' read Protein similarity
  BI739030 cDNA clone IMAGE:5367042 retina 5' read Protein similarity
  BI738966 cDNA clone IMAGE:5367043 retina 5' read Protein similarity
  BF135412 cDNA clone IMAGE:4012299 tumor, metastatic to mammary 5' read Protein similarity
  BI988941 cDNA clone (no-name) neural retina
  BI988879 cDNA clone (no-name) neural retina
  AA034539 cDNA clone IMAGE:467086 embryo 5' read Protein similarity
  AI322578 cDNA clone IMAGE:467086 embryo 5' read Protein similarity
  BG965678 cDNA clone IMAGE:4985237 colon 5' read Protein similarity
  BG404240 cDNA clone IMAGE:4527385 retina 5' read Protein similarity
  AA270716 cDNA clone IMAGE:736416 embryo 5' read Protein similarity
  BI873074 cDNA clone IMAGE:5401251 retina 5' read
  W97380 cDNA clone IMAGE:422160 embryo 5' read
  AA009212 cDNA clone IMAGE:441364 embryo 5' read
  AW261573 cDNA clone IMAGE:2331849 kidney 3' read
  AI324266 cDNA clone IMAGE:467086 embryo 3' read Polyadenylation signal
  AA277690 cDNA clone IMAGE:737501 liver 5' read
  BE381563 cDNA clone IMAGE:3601600 tumor, biopsy sample 5' read
  AI648214 cDNA clone IMAGE:1971458 kidney 3' read
  AI875100 cDNA clone IMAGE:2099735 kidney 3' read Polyadenylation signal
  AI448970 cDNA clone IMAGE:615391 embryo 3' read Polyadenylation signal
  AI173475 cDNA clone IMAGE:1498506 embryo 3' read Polyadenylation signal
  AI891856 cDNA clone IMAGE:2123223 kidney 3' read
  AI592168 cDNA clone IMAGE:598740 spleen 5' read
  AA168432 cDNA clone IMAGE:598740 spleen 5' read
  AI447588 cDNA clone IMAGE:598740 spleen 3' read Polyadenylation signal
  BI740017 cDNA clone IMAGE:5368415 retina 5' read
  AA221101 cDNA clone IMAGE:659881 embryo 5' read
  AA231456 cDNA clone IMAGE:672645 embryo 5' read
  BG090362 cDNA clone IMAGE:4000334 spleen 5' read
  AW320131 cDNA clone IMAGE:2395589 kidney 3' read Protein similarity
  BG870535 cDNA clone IMAGE:4922700 salivary gland 5' read Protein similarity