Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.24771
Description:interleukin 1 receptor accessory protein
Best-Of-UniGene (BOU) SequenceNM_008364
Genomic Coordiantes Displayed:Bases 11895273 to 12139827 of contig GA_x5J8B7W6VEF
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingMm.24771.jpeg
Best sense EST/protein match:AA237107 matched ref|NP_032390.1| (NM_008364) interleukin 1 receptor accessory protein; IL-1R AcP (E = e-106)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AW412792 cDNA clone IMAGE:2921761 liver 5' read Protein similarity
  AA239010 cDNA clone IMAGE:694135 liver 5' read Protein similarity
  AI315385 cDNA clone IMAGE:1922958 liver 5' read Protein similarity
  AI573699 cDNA clone IMAGE:1924752 liver 5' read Protein similarity
  BI221720 cDNA clone IMAGE:5100255 liver 5' read Protein similarity
  AA261428 cDNA clone IMAGE:720593 liver 5' read Protein similarity
  BI331568 cDNA clone IMAGE:5133861 liver 5' read Protein similarity
  AW412810 cDNA clone IMAGE:2921785 liver 5' read Protein similarity

SENSE ESTs

  BI690945 cDNA clone IMAGE:5352334 infiltrating ductal carcinoma 5' read Polyadenylation signal
  BF164997 cDNA clone IMAGE:4019192 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Polyadenylation signal
  BE285634 cDNA clone IMAGE:3495866 tumor, gross tissue 5' read
  BF142651 cDNA clone IMAGE:4020333 tumor, metastatic to mammary 5' read
  BI684629 cDNA clone IMAGE:5342914 infiltrating ductal carcinoma 5' read
  BE286425 cDNA clone IMAGE:3485533 tumor, gross tissue 5' read
  BI152279 cDNA clone IMAGE:5068129 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BI691083 cDNA clone IMAGE:5345631 infiltrating ductal carcinoma 5' read
  BI104289 cDNA clone IMAGE:5035237 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BE284911 cDNA clone IMAGE:3485979 tumor, gross tissue 5' read
  BG924120 cDNA clone IMAGE:4952610 infiltrating ductal carcinoma 5' read
  BI077698 cDNA clone IMAGE:5003739 tumor, biopsy sample 5' read
  BI696271 cDNA clone IMAGE:5373443 tumor, biopsy sample 5' read
  BF167574 cDNA clone IMAGE:3994725 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BE569364 cDNA clone IMAGE:3602506 infiltrating ductal carcinoma 5' read
  BI332459 cDNA clone IMAGE:5133831 liver 5' read
  BE572169 cDNA clone IMAGE:3707877 infiltrating ductal carcinoma 5' read
  BI664887 cDNA clone IMAGE:5324264 infiltrating ductal carcinoma 5' read
  BI106737 cDNA clone IMAGE:5036176 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BI106116 cDNA clone IMAGE:5036177 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AW211290 cDNA clone IMAGE:2648725 tumor, gross tissue 5' read Protein similarity
  BI330085 cDNA clone IMAGE:5135061 liver 5' read Protein similarity
  AI529899 cDNA clone IMAGE:1889050 liver 5' read Protein similarity
  AA571281 cDNA clone IMAGE:987988 muscle 5' read Protein similarity
  AA237107 cDNA clone IMAGE:678507 liver 5' read Protein similarity
  AI303998 cDNA clone IMAGE:1887095 liver 5' read Protein similarity
  AA239486 cDNA clone IMAGE:678770 liver 5' read Protein similarity
  BI331848 cDNA clone IMAGE:5135287 liver 5' read Protein similarity
  AA107505 cDNA clone IMAGE:568335 embryo 5' read Protein similarity
  BF237012 cDNA clone IMAGE:4161899 liver 5' read Protein similarity
  BI872969 cDNA clone IMAGE:5401977 retina 5' read Protein similarity