Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.28480
Description:FK506 binding protein 3 (25kD)
Best-Of-UniGene (BOU) SequenceAK017379
Genomic Coordiantes Displayed:Bases 429991 to 482635 of contig GA_x5J8B7W64DD
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingMm.28480.jpeg
Best sense EST/protein match:BI900322 matched ref|NP_060803.1| (NM_018333) hypothetical protein FLJ20666 [Homo sapiens] (E = 8e-98)
Best antisense EST/protein match:AI097873 matched ref|NP_038930.1| (NM_013902) FK506 binding protein 3 (25kD); FK506-binding protein 3 (E = e-117)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI118455 cDNA clone IMAGE:1482879 liver 3' read Protein similarityPolyadenylation signal
  AI841646 cDNA clone UI-M-AO0-acg-d-07-0-UI 3' read Protein similarityPolyadenylation signal
  BF159583 cDNA clone IMAGE:3988483 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarityPolyadenylation signal
  BG086039 cDNA clone H3121A06 5' read Protein similarityPolyadenylation signal
  BG092835 cDNA clone IMAGE:4000102 spleen 3' read
  AA155565 cDNA clone IMAGE:540791 embryo 5' read
  AW549145 cDNA clone L0046G05 3' read Protein similarityPolyadenylation signal
  BG073301 cDNA clone H3121A06 3' read Protein similarityPolyadenylation signal
  BG092543 cDNA clone IMAGE:3999621 spleen 3' read Protein similarityPolyadenylation signal
  AU019869 cDNA clone J0523F10 embryo 3' read Protein similarityPolyadenylation signal
  AU019806 cDNA clone J0522G02 embryo 3' read Protein similarityPolyadenylation signal
  BI965262 cDNA clone (no-name) 5' read Protein similarityPolyadenylation signal
  BI965038 cDNA clone (no-name) 3' read Protein similarityPolyadenylation signal
  BI963387 cDNA clone (no-name) 3' read Protein similarityPolyadenylation signal
  AI528738 cDNA clone IMAGE:599045 spleen 3' read Protein similarityPolyadenylation signal
  AW543983 cDNA clone C0176E03 3' read Protein similarityPolyadenylation signal
  BG518670 cDNA clone IMAGE:3491672 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarityPolyadenylation signal
  BI967091 cDNA clone (no-name) 5' read Protein similarityPolyadenylation signal
  C79625 cDNA clone J0069D12 embryo 3' read Protein similarityPolyadenylation signal
  BI688994 cDNA clone IMAGE:5353507 infiltrating ductal carcinoma 5' read Protein similarity
  AA638279 cDNA clone IMAGE:988654 embryo 5' read
  AA200660 cDNA clone IMAGE:638099 spleen 5' read
  BE303144 cDNA clone IMAGE:3491672 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BE283667 cDNA clone IMAGE:3495087 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  BG147349 cDNA clone IMAGE:3998993 spleen 5' read Protein similarity
  BF607383 cDNA clone ICRFp522H1249 whole embryo 5' read Protein similarityPolyadenylation signal
  BG800692 cDNA clone (no-name) neural retina
  AA797490 cDNA clone IMAGE:1245108 mammary gland 5' read Protein similarity
  AL361365 cDNA clone M9122B33 embryo 5' read Protein similarity
  AL362763 cDNA clone P9324B01 embryo 5' read Protein similarity
  AA168959 cDNA clone IMAGE:599045 spleen 5' read Protein similarity
  AA914388 cDNA clone IMAGE:1313894 mammary gland 5' read Protein similarity
  BF120133 cDNA clone IMAGE:3985904 tumor, gross tissue 5' read Protein similarity
  AI322742 cDNA clone IMAGE:599045 spleen 5' read Protein similarity
  AA118129 cDNA clone IMAGE:537520 embryo 5' read Protein similarity
  AI097873 cDNA clone IMAGE:1482879 liver 5' read Protein similarity
  AA797358 cDNA clone IMAGE:1245008 mammary gland 5' read Protein similarity
  AI183105 cDNA clone IMAGE:1395893 mammary gland 5' read Protein similarity
  BG090933 cDNA clone IMAGE:3999621 spleen 5' read Protein similarity
  AA120298 cDNA clone IMAGE:538114 embryo 5' read Protein similarity
  BG805134 cDNA clone (no-name) neural retina
  BI987669 cDNA clone (no-name) neural retina
  BI985593 cDNA clone (no-name) neural retina
  BG864646 cDNA clone IMAGE:4919454 tumor, gross tissue 5' read Protein similarity
  BE305409 cDNA clone IMAGE:3492535 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AL024050 cDNA clone 528-5H15 dissected endoderm 5' read Protein similarity
  C89465 cDNA clone 01B00067PC15 embryo Protein similarity
  BF016288 cDNA clone IMAGE:3661971 tumor, metastatic to mammary 5' read Protein similarity
  AL117879 cDNA clone 528_12J14 dissected endoderm 5' read Protein similarity
  AA389343 cDNA clone IMAGE:570427 embryo 5' read Protein similarity
  AI286433 cDNA clone IMAGE:1888412 liver 5' read Protein similarity
  BE290826 cDNA clone IMAGE:3498372 infiltrating ductal carcinoma 5' read Protein similarity
  AA399855 cDNA clone IMAGE:805844 embryo 5' read Protein similarity
  BF452530 cDNA clone IMAGE:3809618 testis 5' read Protein similarity
  AA511602 cDNA clone IMAGE:930399 muscle 5' read Protein similarity
  AI325783 cDNA clone IMAGE:538114 embryo 5' read Protein similarity
  AI892477 cDNA clone IMAGE:538114 embryo 5' read Protein similarity
  AL363317 cDNA clone K9308B55 embryo 5' read Protein similarity

SENSE ESTs

  BB850469 cDNA clone F930107G01 inner ear 5' read
  BB851014 cDNA clone F930110H19 inner ear 5' read
  BF121438 cDNA clone IMAGE:3993387 tumor, gross tissue 5' read Protein similarity
  BF788623 cDNA clone IMAGE:4223545 kidney 5' read
  BI646152 cDNA clone IMAGE:5316448 tumor, gross tissue 5' read
  BG920237 cDNA clone IMAGE:4951324 infiltrating ductal carcinoma 5' read Protein similarity
  BF016128 cDNA clone IMAGE:3661168 tumor, metastatic to mammary 5' read Protein similarity
  BI900283 cDNA clone (no-name) 5' read Protein similarity
  BI900322 cDNA clone (no-name) 5' read Protein similarity
  BI900353 cDNA clone (no-name) 5' read Protein similarity
  BB578559 cDNA clone 6430600O05 olfactory brain 5' read
  AI465827 cDNA clone IMAGE:1247104 mammary gland 5' read Protein similarity
  AA839376 cDNA clone IMAGE:1247104 mammary gland 5' read Protein similarity
  BE573824 cDNA clone IMAGE:3709368 infiltrating ductal carcinoma 5' read
  AU051113 cDNA clone MNCb-1536 brain 5' read
  AA839495 cDNA clone IMAGE:1433669 uterus 5' read
  AA510004 cDNA clone IMAGE:890707 mammary gland 5' read
  BF134130 cDNA clone IMAGE:4007112 tumor, metastatic to mammary 5' read
  AI553608 cDNA clone IMAGE:1247104 mammary gland 3' read Polyadenylation signal
  AI563652 cDNA clone IMAGE:1294068 macrophage 3' read Polyadenylation signal
  AA164028 cDNA clone IMAGE:540640 embryo 5' read
  AI550575 cDNA clone IMAGE:540640 embryo 5' read Polyadenylation signal
  BE571380 cDNA clone IMAGE:3707882 infiltrating ductal carcinoma 5' read
  AI427165 cDNA clone IMAGE:540640 embryo 3' read Polyadenylation signal
  AV286026 cDNA clone 5031417J05 ovary and uterus
  AA116697 cDNA clone IMAGE:538565 embryo 5' read
  AI550178 cDNA clone IMAGE:538565 embryo 5' read
  BI107340 cDNA clone IMAGE:5039347 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  AA881711 cDNA clone IMAGE:1265577 mammary gland 5' read
  AI155120 cDNA clone IMAGE:1450202 uterus 5' read
  AA163667 cDNA clone IMAGE:597957 spleen 5' read
  AA176040 cDNA clone IMAGE:620124 spleen 5' read
  AA499629 cDNA clone IMAGE:851791 mammary gland 5' read
  AI427026 cDNA clone IMAGE:538565 embryo 3' read Polyadenylation signal
  AA288861 cDNA clone IMAGE:600176 embryo 5' read Polyadenylation signal