Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.29253
Description:RIKEN cDNA 2310032N20 gene
Best-Of-UniGene (BOU) SequenceAK009584
Genomic Coordiantes Displayed:Bases 5129328 to 5154810 of contig GA_x5J8B7W4H34
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingMm.29253.jpeg
Best sense EST/protein match:AK009584 matched dbj|BAB26375.1| (AK009584) data source:SPTR, source key:O43480, (E = e-158)
Best antisense EST/protein match:BF166529 matched ref|NP_060039.1| (NM_017569) transcription factor (p38 interacting protein) [Homo (E = 1e-29)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AW209224 cDNA clone IMAGE:2598858 infiltrating ductal carcinoma 3' read
  AA589236 cDNA clone IMAGE:992158 embryo 5' read
  AW212723 cDNA clone IMAGE:2647464 tumor, biopsy sample 3' read
  AI840176 cDNA clone UI-M-AO0-acc-f-04-0-UI 3' read
  AW557937 cDNA clone L0288E07 3' read Protein similarity
  AW537787 cDNA clone G0120A01 3' read Protein similarity
  AU018321 cDNA clone J0501H01 embryo 3' read
  BG065515 cDNA clone H3032A05 3' read
  AI448798 cDNA clone IMAGE:613985 embryo 3' read
  AI427115 cDNA clone IMAGE:539812 embryo 3' read
  BG292678 cDNA clone IMAGE:4501281 retina 5' read
  BI736435 cDNA clone IMAGE:5366510 retina 5' read Protein similarity
  AA793060 cDNA clone IMAGE:1069252 mammary gland 5' read Protein similarity
  BE368618 cDNA clone IMAGE:3589230 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  AA895120 cDNA clone IMAGE:1294774 macrophage 5' read Protein similarity
  BF166529 cDNA clone IMAGE:4018231 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  AA959427 cDNA clone IMAGE:1347130 mammary gland 5' read Protein similarity
  AL024197 cDNA clone 528-6D20 dissected endoderm 5' read Protein similarity
  BE381353 cDNA clone IMAGE:3600537 tumor, biopsy sample 5' read
  AA674059 cDNA clone IMAGE:1082571 embryo 5' read Protein similarity
  BE652714 cDNA clone UIM-AO0-acc-e-06-0-UI- 5' read
  BI149258 cDNA clone IMAGE:5012492 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read

SENSE ESTs

  BI465954 cDNA clone (no-name) pancreas 5' read Protein similarity
  AA003291 cDNA clone IMAGE:427052 embryo 5' read Protein similarity
  AW909984 cDNA clone IMAGE:3156430 infiltrating ductal carcinoma 5' read Protein similarity
  AA000401 cDNA clone IMAGE:401402 embryo 5' read Protein similarity
  W43974 cDNA clone IMAGE:354103 embryo 5' read Protein similarity
  BI656626 cDNA clone IMAGE:5329291 tumor, gross tissue 5' read
  BG088541 cDNA clone H3154D05 5' read Protein similarity
  AA000683 cDNA clone IMAGE:425812 embryo 5' read Protein similarity
  BI152376 cDNA clone IMAGE:5067974 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AA541923 cDNA clone IMAGE:933208 embryo 5' read Protein similarity
  BE533670 cDNA clone IMAGE:3596547 infiltrating ductal carcinoma 5' read
  AW557853 cDNA clone L0287D11 3' read Protein similarityPolyadenylation signal
  AA637410 cDNA clone IMAGE:1179844 mammary gland 5' read Protein similarity
  AW536613 cDNA clone G0106F02 3' read Protein similarityPolyadenylation signal
  BI079334 cDNA clone IMAGE:5005487 tumor, biopsy sample 5' read Protein similarity
  BE532394 cDNA clone IMAGE:3597464 infiltrating ductal carcinoma 5' read
  AU024429 cDNA clone J0453D10 unfertilized egg 3' read Protein similarityPolyadenylation signal
  AA607321 cDNA clone IMAGE:1006372 embryo 5' read Protein similarity
  AW823008 cDNA clone IMAGE:3156430 infiltrating ductal carcinoma 3' read Protein similarityPolyadenylation signal
  AI841918 cDNA clone UI-M-AO0-acd-g-01-0-UI 3' read Protein similarityPolyadenylation signal
  BF731480 cDNA clone IMAGE:3977063 marginal zone b-cell tumor 5' read
  AU024430 cDNA clone J0453D11 unfertilized egg 3' read Protein similarityPolyadenylation signal
  AU022981 cDNA clone J0423F03 unfertilized egg 3' read Protein similarityPolyadenylation signal
  AA165954 cDNA clone IMAGE:605020 embryonal carcinoma 5' read Protein similarity
  BG076003 cDNA clone H3154D05 3' read Polyadenylation signal
  AA675510 cDNA clone IMAGE:1110593 embryo 5' read