Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.30245
Description:RIKEN cDNA 2310047I15 gene
Best-Of-UniGene (BOU) SequenceAK019095
Genomic Coordiantes Displayed:Bases 254 to 881 of contig GA_x5J8B7TSA7U
BOU Orientation Along Contig:LEFT-TO-RIGHT with respect to contig
Link to JPEG of genomic mappingMm.30245.jpeg
Best sense EST/protein match:AK019095 matched dbj|BAB31543.1| (AK019095) data source:SPTR, source key:Q9UGB1, (E = e-145)
Best antisense EST/protein match:BE304281 matched sp|P27465|DPSD_CRIGR PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME (E = 1e-46)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BE304281 cDNA clone IMAGE:3498169 infiltrating ductal carcinoma 5' read Protein similarity
  BI692756 cDNA clone IMAGE:5370945 tumor, biopsy sample 5' read
  AA166440 cDNA clone IMAGE:616235 embryonal carcinoma 5' read Protein similarity
  AI005910 cDNA clone IMAGE:1364151 mammary gland 5' read Protein similarity
  BG965689 cDNA clone IMAGE:4985097 colon 5' read
  AA457930 cDNA clone IMAGE:849511 mammary gland 5' read
  BG073737 cDNA clone H3125D03 3' read
  BF303058 cDNA clone IMAGE:4165919 salivary gland 5' read Protein similarity
  BE380814 cDNA clone IMAGE:3599912 tumor, biopsy sample 5' read
  AA199558 cDNA clone IMAGE:657492 embryo 5' read
  BI454991 cDNA clone IMAGE:5252800 tumor, gross tissue 5' read
  BE288815 cDNA clone IMAGE:3489278 tumor, gross tissue 5' read
  BE283516 cDNA clone IMAGE:3494709 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  W48341 cDNA clone IMAGE:355372 embryo 5' read
  BG063632 cDNA clone H3009F05 3' read Polyadenylation signal
  BE381282 cDNA clone IMAGE:3600375 tumor, biopsy sample 5' read
  BE534171 cDNA clone IMAGE:3595936 infiltrating ductal carcinoma 5' read
  BF785187 cDNA clone IMAGE:4236811 kidney 5' read
  BF118442 cDNA clone IMAGE:3667342 tumor, gross tissue 3' read Polyadenylation signal
  BE368841 cDNA clone IMAGE:3590582 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BE311284 cDNA clone IMAGE:3158145 infiltrating ductal carcinoma 3' read
  BI153012 cDNA clone IMAGE:5068464 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  AI648880 cDNA clone IMAGE:1970608 kidney 3' read
  BG095118 cDNA clone IMAGE:4001125 spleen 5' read
  AA672437 cDNA clone IMAGE:1054077 mammary gland 5' read
  AW212211 cDNA clone IMAGE:2649181 tumor, gross tissue 3' read
  AW214257 cDNA clone IMAGE:2645487 spontaneous tumor, metastatic to mammary. stem cell origin. 3' read Polyadenylation signal
  BG923099 cDNA clone IMAGE:4952956 infiltrating ductal carcinoma 5' read
  AW413153 cDNA clone IMAGE:2922228 forebrain 3' read Polyadenylation signal
  AI019759 cDNA clone IMAGE:1364784 mammary gland 5' read
  BG276636 cDNA clone IMAGE:4001125 spleen 3' read Polyadenylation signal
  AI481313 cDNA clone IMAGE:849744 mammary gland 3' read Polyadenylation signal
  AL360797 cDNA clone A9C10A40 embryo 5' read
  AW550806 cDNA clone L0069F02 3' read Protein similarity
  BI113363 cDNA clone IMAGE:5030895 tumor, gross tissue 5' read
  BI654434 cDNA clone IMAGE:5325217 tumor, gross tissue 5' read
  BG086384 cDNA clone H3125D03 5' read
  BF138257 cDNA clone IMAGE:4009343 tumor, metastatic to mammary 5' read
  AW536993 cDNA clone G0111B09 3' read
  AW322124 cDNA clone IMAGE:2646158 spontaneous tumor, metastatic to mammary. stem cell origin. 3' read Polyadenylation signal
  AI931795 cDNA clone IMAGE:2135502 embryo 3' read
  AI957371 cDNA clone IMAGE:2158991 kidney 3' read
  AA682033 cDNA clone IMAGE:1180490 muscle 3' read Polyadenylation signal
  AI426976 cDNA clone IMAGE:537640 embryo 3' read Polyadenylation signal
  AI929919 cDNA clone IMAGE:2123599 kidney 3' read
  BF319859 cDNA clone IMAGE:3665662 tumor, gross tissue 3' read Polyadenylation signal
  BE334514 cDNA clone IMAGE:3257476 tumor, gross tissue 5' read
  BF135297 cDNA clone IMAGE:4009746 tumor, metastatic to mammary 5' read
  BG065207 cDNA clone H3028E03 3' read
  AW763732 cDNA clone IMAGE:3155103 tumor, gross tissue 3' read Polyadenylation signal
  AI874633 cDNA clone IMAGE:2088284 embryo 3' read
  AI550124 cDNA clone IMAGE:537640 embryo 5' read
  BG142003 cDNA clone (no-name) total pancreas 3' read Polyadenylation signal

SENSE ESTs

  BI653413 cDNA clone IMAGE:5341596 tumor, gross tissue 5' read
  BI081368 cDNA clone IMAGE:5010966 tumor, biopsy sample 5' read
  BG918540 cDNA clone IMAGE:4947672 infiltrating ductal carcinoma 5' read Protein similarity
  BF123530 cDNA clone IMAGE:4022939 tumor, gross tissue 5' read Protein similarity
  AL363400 cDNA clone V9304B03 embryo 5' read Protein similarity
  BI456461 cDNA clone IMAGE:5251365 tumor, gross tissue 5' read Protein similarity
  AA543561 cDNA clone IMAGE:935556 mammary gland 5' read
  AV285643 cDNA clone 5031412E18 ovary and uterus
  BI556089 cDNA clone IMAGE:5291001 tumor, gross tissue 5' read Protein similarity
  BF180455 cDNA clone IMAGE:4036402 tumor, gross tissue 5' read Protein similarity
  BG245194 cDNA clone IMAGE:4486150 tumor, biopsy sample 5' read
  AA032568 cDNA clone IMAGE:464978 embryo 5' read
  AA050196 cDNA clone IMAGE:476175 embryo 5' read
  BI107940 cDNA clone IMAGE:5031841 tumor, gross tissue 5' read
  BI555678 cDNA clone IMAGE:5292563 tumor, gross tissue 5' read Protein similarity
  BI646021 cDNA clone IMAGE:5315210 tumor, gross tissue 5' read Protein similarity
  BI653414 cDNA clone IMAGE:5341644 tumor, gross tissue 5' read Protein similarity
  W50651 cDNA clone IMAGE:367288 embryo 5' read
  AI608316 cDNA clone IMAGE:849744 mammary gland 5' read
  AU035550 cDNA clone MNCb-0573 brain Protein similarity
  AW741371 cDNA clone IMAGE:3153755 tumor, gross tissue 5' read
  BE292355 cDNA clone IMAGE:3158145 infiltrating ductal carcinoma 5' read Protein similarity
  BE310037 cDNA clone IMAGE:3486273 tumor, gross tissue 5' read Protein similarity
  BF137686 cDNA clone IMAGE:4010645 tumor, metastatic to mammary 5' read Protein similarity
  BF151106 cDNA clone IMAGE:3667272 tumor, gross tissue 5' read Protein similarity
  BF164079 cDNA clone IMAGE:3991994 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BF181318 cDNA clone IMAGE:4036679 tumor, gross tissue 5' read Protein similarity
  BF729907 cDNA clone IMAGE:3976354 marginal zone b-cell tumor 5' read
  BG962730 cDNA clone IMAGE:4984858 colon 5' read Protein similarity
  BF582996 cDNA clone IMAGE:4217752 colon 5' read
  AW762647 cDNA clone IMAGE:3155103 tumor, gross tissue 5' read
  BF661692 cDNA clone IMAGE:3821520 spleen 3' read
  AA968135 cDNA clone IMAGE:1617744 hypothalamus 5' read Protein similarity
  BF149786 cDNA clone IMAGE:3665662 tumor, gross tissue 5' read Protein similarity
  BI331242 cDNA clone IMAGE:5135861 liver 5' read
  AA118158 cDNA clone IMAGE:537640 embryo 5' read
  BG963739 cDNA clone IMAGE:4986067 colon 5' read Polyadenylation signal
  BG963738 cDNA clone IMAGE:4986019 colon 5' read Polyadenylation signal
  BM171771 cDNA clone IMAGE:4986019 colon 5' read
  AW907668 cDNA clone IMAGE:3158145 infiltrating ductal carcinoma 3' read Polyadenylation signal
  AA673371 cDNA clone IMAGE:1024731 muscle 5' read