Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.37592
Description:RIKEN cDNA 2310014G06 gene
Best-Of-UniGene (BOU) SequenceAK009339
Genomic Coordiantes Displayed:Bases 2121094 to 2130464 of contig GA_x5J8B7W3TYH
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingMm.37592.jpeg
Best sense EST/protein match:AK009339 matched dbj|BAB26227.1| (AK009339) data source:SPTR, source key:Q9NRG7, (E = e-157)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BF015685 cDNA clone IMAGE:3660816 tumor, metastatic to mammary 5' read
  BI330802 cDNA clone IMAGE:5135419 liver 5' read
  AW910221 cDNA clone IMAGE:3156490 infiltrating ductal carcinoma 5' read
  BF300117 cDNA clone IMAGE:4167146 salivary gland 5' read
  AI159573 cDNA clone IMAGE:1332494 mammary gland 5' read Protein similarity
  BF141164 cDNA clone IMAGE:4016846 tumor, metastatic to mammary 5' read
  BG975478 cDNA clone IMAGE:4978595 tumor, gross tissue 5' read Protein similarity
  BE285160 cDNA clone IMAGE:3490524 tumor, gross tissue 5' read
  BE286013 cDNA clone IMAGE:3496750 tumor, gross tissue 5' read
  BG863379 cDNA clone IMAGE:4918132 tumor, gross tissue 5' read
  BF122252 cDNA clone IMAGE:3985183 tumor, gross tissue 5' read
  BF578600 cDNA clone IMAGE:4207538 colon 5' read Polyadenylation signal
  AW823057 cDNA clone IMAGE:3156490 infiltrating ductal carcinoma 3' read Polyadenylation signal

SENSE ESTs

  AW322287 cDNA clone IMAGE:2648183 tumor, biopsy sample 3' read Polyadenylation signal
  AW558639 cDNA clone L0297G12 3' read Protein similarityPolyadenylation signal
  BI788717 cDNA clone (no-name) pancreas 3' read Protein similarityPolyadenylation signal
  AA174623 cDNA clone IMAGE:617285 spleen 5' read Protein similarity
  BF301834 cDNA clone IMAGE:4168476 salivary gland 5' read Protein similarity
  AW323539 cDNA clone IMAGE:2648183 tumor, biopsy sample 5' read Protein similarity
  AI549807 cDNA clone IMAGE:832513 mammary gland 5' read Protein similarity
  BE532016 cDNA clone IMAGE:3599427 infiltrating ductal carcinoma 5' read Protein similarity
  BI666470 cDNA clone IMAGE:5322684 infiltrating ductal carcinoma 5' read Protein similarity
  AA124041 cDNA clone IMAGE:578363 kidney 5' read Protein similarity
  BF583375 cDNA clone IMAGE:4224977 colon 5' read Protein similarity
  AA270051 cDNA clone IMAGE:735516 embryo 5' read Protein similarity
  AI876271 cDNA clone IMAGE:1974630 pituitary 5' read Protein similarity
  BF101008 cDNA clone IMAGE:3983560 tumor, biopsy sample 5' read Protein similarity
  BI148794 cDNA clone IMAGE:5053260 liver 5' read Protein similarity
  BI687635 cDNA clone IMAGE:5352821 infiltrating ductal carcinoma 5' read Protein similarity
  BI652259 cDNA clone IMAGE:5340265 tumor, gross tissue 5' read Protein similarity
  BG916165 cDNA clone IMAGE:4937177 tumor, gross tissue 5' read Protein similarity
  BG865945 cDNA clone IMAGE:4913979 salivary gland 5' read Protein similarity
  BF537976 cDNA clone IMAGE:4188821 salivary gland 5' read Protein similarity
  BI555110 cDNA clone IMAGE:5289130 tumor, gross tissue 5' read Protein similarity
  AU051349 cDNA clone MNCb-1910 brain 5' read Protein similarity
  AA822401 cDNA clone IMAGE:1246002 mammary gland 5' read Protein similarity
  BI736866 cDNA clone IMAGE:5367861 retina 5' read Protein similarity
  BF165814 cDNA clone IMAGE:3995554 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BI732100 cDNA clone IMAGE:5360255 retina 5' read
  BI789057 cDNA clone (no-name) pancreas 5' read
  BG803636 cDNA clone (no-name) neural retina
  BG803637 cDNA clone (no-name) neural retina
  AA423572 cDNA clone IMAGE:832513 mammary gland 5' read
  AI789469 cDNA clone IMAGE:2064697 kidney 5' read