Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.38870
Description:Mus musculus, Similar to hypothetical protein FLJ13868, clone MGC:28903 IMAGE:4919869, mRNA, complete cds
Best-Of-UniGene (BOU) SequenceBC017158
Genomic Coordiantes Displayed:Bases 5062000 to 5118000 of contig GA_x5J8B7W7W52
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingMm.38870.jpeg
Best sense EST/protein match:BC017158 matched gb|AAH17158.1|AAH17158 (BC017158) Similar to hypothetical protein FLJ13868 [Mus musculus] (E = 0.0)
Best antisense EST/protein match:AI315905 matched gb|AAK61606.1| (AY033886) low affinity sodium-dependent glucose cotransporter [Mus (E = e-119)


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  AI789450 cDNA clone IMAGE:2064679 kidney 5' read Protein similarity
  AW106554 cDNA clone IMAGE:2235980 kidney 5' read Protein similarity
  BF783278 cDNA clone IMAGE:4238376 kidney 5' read Protein similarity
  AW012026 cDNA clone IMAGE:2182242 kidney 5' read Protein similarity
  AI956603 cDNA clone IMAGE:2136782 kidney 5' read Protein similarity
  BF786111 cDNA clone IMAGE:4239068 kidney 5' read Protein similarity
  BG973011 cDNA clone IMAGE:4973040 kidney 5' read Protein similarity
  BF789267 cDNA clone IMAGE:4223131 kidney 5' read Protein similarity
  AA987021 cDNA clone IMAGE:1432054 kidney 5' read Protein similarity
  AW259833 cDNA clone IMAGE:2317534 liver 5' read Protein similarity
  BG970569 cDNA clone IMAGE:4973039 kidney 5' read Protein similarity
  AI315967 cDNA clone IMAGE:1921262 kidney 5' read Protein similarity
  BF784930 cDNA clone IMAGE:4239596 kidney 5' read Protein similarity
  AW611146 cDNA clone IMAGE:2536946 kidney 5' read Protein similarity
  AI931373 cDNA clone IMAGE:2135810 kidney 5' read Protein similarity
  AI119017 cDNA clone IMAGE:1481144 kidney 5' read Protein similarity
  AW319425 cDNA clone IMAGE:2395502 kidney 5' read Protein similarity
  AI789298 cDNA clone IMAGE:1972725 kidney 5' read Protein similarity
  AI930111 cDNA clone IMAGE:2123474 kidney 5' read Protein similarity
  AI225681 cDNA clone IMAGE:1908014 kidney 5' read Protein similarity
  BF788779 cDNA clone IMAGE:4235707 kidney 5' read Protein similarity
  AI789221 cDNA clone IMAGE:1972631 kidney 5' read Protein similarity
  AW259086 cDNA clone IMAGE:2331603 kidney 5' read Protein similarity
  BF789563 cDNA clone IMAGE:4221615 kidney 5' read Protein similarity
  AW227261 cDNA clone IMAGE:2286549 kidney 5' read Protein similarity
  AI956613 cDNA clone IMAGE:2136783 kidney 5' read Protein similarity
  BG971343 cDNA clone IMAGE:4973974 kidney 5' read Protein similarity
  BG970710 cDNA clone IMAGE:4971915 kidney 5' read Protein similarity
  AI315905 cDNA clone IMAGE:1921182 kidney 5' read Protein similarity
  AW012766 cDNA clone IMAGE:2159070 kidney 5' read Protein similarity
  AI789140 cDNA clone IMAGE:1972542 kidney 5' read Protein similarity
  AI791053 cDNA clone IMAGE:1972887 kidney 5' read Protein similarity
  BF789594 cDNA clone IMAGE:4221863 kidney 5' read Protein similarity
  AW106808 cDNA clone IMAGE:2236371 kidney 5' read Protein similarity
  AI317476 cDNA clone IMAGE:1920767 kidney 5' read Protein similarity
  BG972888 cDNA clone IMAGE:4973896 kidney 5' read Protein similarity
  BI102259 cDNA clone IMAGE:5040929 kidney 5' read Protein similarity
  BI103002 cDNA clone IMAGE:5043917 kidney 5' read Protein similarity
  BF783402 cDNA clone IMAGE:4238530 kidney 5' read Protein similarity
  AW012788 cDNA clone IMAGE:2159096 kidney 5' read Protein similarity
  AI790371 cDNA clone IMAGE:2064679 kidney 3' read Protein similarityPolyadenylation signal
  AW045170 cDNA clone IMAGE:2182915 kidney 5' read Protein similarity
  BI103789 cDNA clone IMAGE:5043321 kidney 5' read Protein similarity
  BI099803 cDNA clone IMAGE:5040075 kidney 5' read Protein similarity
  BF787646 cDNA clone IMAGE:4242356 kidney 5' read Protein similarity
  AW108345 cDNA clone IMAGE:2235980 kidney 3' read Protein similarity
  AI647605 cDNA clone IMAGE:1971610 kidney 3' read Protein similarity
  AW012605 cDNA clone IMAGE:2159070 kidney 3' read Protein similarityPolyadenylation signal
  AW261480 cDNA clone IMAGE:2331603 kidney 3' read
  AW107250 cDNA clone IMAGE:2182915 kidney 3' read Protein similarityPolyadenylation signal
  AI788880 cDNA clone IMAGE:1972887 kidney 3' read Protein similarityPolyadenylation signal
  AI875490 cDNA clone IMAGE:1972275 kidney 3' read Protein similarityPolyadenylation signal
  AI875690 cDNA clone IMAGE:1972542 kidney 3' read Protein similarityPolyadenylation signal
  AI788744 cDNA clone IMAGE:1972725 kidney 3' read Protein similarity
  AW107751 cDNA clone IMAGE:2236371 kidney 3' read Protein similarity
  AI314999 cDNA clone IMAGE:1920767 kidney 3' read Protein similarity
  AI956836 cDNA clone IMAGE:2136783 kidney 3' read Protein similarityPolyadenylation signal
  AW260398 cDNA clone IMAGE:2317534 liver 3' read Protein similarityPolyadenylation signal
  AW319966 cDNA clone IMAGE:2395502 kidney 3' read Protein similarity
  AI647893 cDNA clone IMAGE:1971962 kidney 3' read Protein similarityPolyadenylation signal
  AI648026 cDNA clone IMAGE:1971367 kidney 3' read Polyadenylation signal

SENSE ESTs

  AA509826 cDNA clone IMAGE:862765 mammary gland 5' read
  AW552907 cDNA clone L0219B04 3' read Polyadenylation signal
  BI331596 cDNA clone IMAGE:5136220 liver 5' read Protein similarity
  BM055911 cDNA clone (no-name) 5' read
  BM055599 cDNA clone (no-name) 3' read
  AW552979 cDNA clone L0220B04 3' read Protein similarity
  AA290221 cDNA clone IMAGE:790491 kidney 5' read Protein similarity
  BF141737 cDNA clone IMAGE:4015368 tumor, metastatic to mammary 5' read
  BG297084 cDNA clone IMAGE:4506591 retina 5' read
  BF788550 cDNA clone IMAGE:4242389 kidney 5' read
  BI103667 cDNA clone IMAGE:5044187 kidney 5' read
  BI219880 cDNA clone IMAGE:5099671 liver 5' read Protein similarity
  BF784381 cDNA clone IMAGE:4238460 kidney 5' read Protein similarity
  BG867454 cDNA clone IMAGE:4919869 salivary gland 5' read
  BE372246 cDNA clone IMAGE:3581849 tumor, biopsy sample 5' read Protein similarity
  BI083135 cDNA clone IMAGE:5006861 tumor, biopsy sample 5' read Protein similarity
  BI077582 cDNA clone IMAGE:5003728 tumor, biopsy sample 5' read Protein similarity
  AI425981 cDNA clone IMAGE:425824 embryo 3' read
  AA000810 cDNA clone IMAGE:425824 embryo 5' read
  BB848553 cDNA clone F930003E19 inner ear 5' read