Computational Discovery of Overlapping Transcriptional Units in the Human & Mouse Genomes

Candidate UniGene cluster:UniGene Cluster Mm.41304
Description:glucosamine-phosphate N-acetyltransferase 1
Best-Of-UniGene (BOU) SequenceNM_019425
Genomic Coordiantes Displayed:Bases 585000 to 620000 of contig GA_x5J8B7W5WBF
BOU Orientation Along Contig:RIGHT-TO-LEFT with respect to contig
Link to JPEG of genomic mappingMm.41304.jpeg
Best sense EST/protein match:BB617369 matched ref|NP_062298.1| (NM_019425) glucosamine-phosphate N-acetyltransferase 1; (E = 8e-92)
Best antisense EST/protein match:No protein match with an e-value of less than 1e-10


This page provides information on exon-intron structure, mouse-human homologies, polyA signals & locations, and protein homologies of ESTs from directionally-cloned libraries that are members of a UniGene cluster that is a candidate for containing ESTs derived from distinct, overlapping sense & antisense transcripts.
The upper portion of the graph is reserved for the exon-intron mappings of ESTs oriented consistently with the Best-Of-UniGene (BOU) sequence (in gold). The lower portion of the graph is reserved for the exon-intron mappings of ESTs oriented opposite the BOU sequence (in white). Dividing these portions are the exon-intron mapping of the BOU sequence itself (in blue and green). Immedietely below the BOU are HUMMUS-defined streches of sequences highly conserved between mouse and human. The height of each bar is reflective of the % identity of human-mouse homology over a 100 base-pair window centered at a given base. At the left of the graph, the GenBank accession number of the BOU or EST sequence represented along that Y-axis position is listed, along with the UniLib identification number of the library from which that EST was derived.Below the graph, the GenBank accession numbers of each of the sense & antisense ESTs are provided, along with information on which have polyA signals and protein homologies, as determined by the NCBI.

Below are listed the same set of ESTs as is depicted above, with information of read direction, tissue type, protein similarity (P), and poly-adenylation signal (A).

ANTISENSE ESTs
  BE284907 cDNA clone IMAGE:3485881 tumor, gross tissue 5' read
  AW259260 cDNA clone IMAGE:2331988 kidney 5' read
  BI872956 cDNA clone IMAGE:5401687 retina 5' read
  BI154023 cDNA clone IMAGE:5002916 tumor, biopsy sample 5' read
  BG068709 cDNA clone H3068E04 3' read
  BE573325 cDNA clone IMAGE:3710008 infiltrating ductal carcinoma 5' read
  BG797792 cDNA clone (no-name) pancreas 5' read
  BG081735 cDNA clone H3068E04 5' read
  BM171722 cDNA clone IMAGE:5002916 tumor, biopsy sample 5' read
  AU023609 cDNA clone J0435E06 unfertilized egg 3' read
  AA184094 cDNA clone IMAGE:621866 spleen 5' read
  BF164161 cDNA clone IMAGE:3992160 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BE533909 cDNA clone IMAGE:3597840 infiltrating ductal carcinoma 5' read
  BF661478 cDNA clone IMAGE:3823701 spleen 5' read
  BF161309 cDNA clone IMAGE:3989512 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read
  BI077573 cDNA clone IMAGE:5003772 tumor, biopsy sample 5' read
  BI466319 cDNA clone (no-name) pancreas 3' read Polyadenylation signal
  BG797708 cDNA clone (no-name) pancreas 3' read Polyadenylation signal
  AI877224 cDNA clone IMAGE:1434523 uterus 5' read Polyadenylation signal
  AA840119 cDNA clone IMAGE:1433878 uterus 5' read
  BI083568 cDNA clone IMAGE:5006764 tumor, biopsy sample 5' read
  AA795525 cDNA clone IMAGE:1110146 embryo 5' read

SENSE ESTs

  BI794225 cDNA clone (no-name) 3' read Polyadenylation signal
  BI466007 cDNA clone (no-name) pancreas 5' read
  BI793600 cDNA clone (no-name) pancreas 3' read Polyadenylation signal
  BG074881 cDNA clone H3140E05 3' read
  AV285256 cDNA clone 5031409A21 ovary and uterus
  AW554588 cDNA clone L0242G09 3' read
  AW554579 cDNA clone L0242F09 3' read
  AU021542 cDNA clone J0548G10 embryo 3' read Polyadenylation signal
  BE848964 cDNA clone IMAGE:3415404 spleen 5' read
  AU045665 cDNA clone J0939E06 3' read Polyadenylation signal
  AA815892 cDNA clone IMAGE:1082418 embryo 5' read
  BG087503 cDNA clone H3140E05 5' read
  BG071967 cDNA clone H3105B12 3' read Polyadenylation signal
  AA288555 cDNA clone IMAGE:749313 spleen 5' read
  BG084885 cDNA clone H3105B12 5' read
  AU015271 cDNA clone J0709H01 embryo 3' read Polyadenylation signal
  BI657511 cDNA clone IMAGE:5326283 tumor, gross tissue 5' read
  BG070236 cDNA clone H3085B07 3' read
  AA570941 cDNA clone IMAGE:987495 muscle 5' read
  BG922839 cDNA clone IMAGE:4952587 infiltrating ductal carcinoma 5' read
  C88768 cDNA clone 01B00047NH03 embryo Protein similarity
  BG083160 cDNA clone H3085B07 5' read
  AA269728 cDNA clone IMAGE:748612 liver 5' read Protein similarity
  BE917289 cDNA clone IMAGE:3964629 tumor, biopsy sample 5' read Protein similarity
  AU043208 cDNA clone J0901E12 3' read
  BI715572 cDNA clone (no-name) 5' read Protein similarity
  BB617369 cDNA clone 5031409A21 ovary and uterus Protein similarity
  BI793858 cDNA clone (no-name) pancreas 5' read Protein similarity
  BE381925 cDNA clone IMAGE:3601457 tumor, biopsy sample 5' read Protein similarity
  BG173951 cDNA clone IMAGE:4457333 tumor, biopsy sample 5' read Protein similarity
  BI794452 cDNA clone (no-name) 5' read Protein similarity
  BI109254 cDNA clone IMAGE:5027046 tumor, gross tissue 5' read Protein similarity
  BG071494 cDNA clone H3099F05 3' read Protein similarity
  BI150310 cDNA clone IMAGE:5065641 spontaneous tumor, metastatic to mammary. stem cell origin. 5' read Protein similarity
  AA511047 cDNA clone IMAGE:890935 mammary gland 5' read
  BG101003 cDNA clone IMAGE:3658317 spermatocytes, pooled from multiple mice 5' read Protein similarity
  AA165912 cDNA clone IMAGE:616308 embryonal carcinoma 5' read Protein similarity
  BI159493 cDNA clone IMAGE:5060551 tumor, gross tissue 5' read Protein similarity
  AA138266 cDNA clone IMAGE:596635 spleen 5' read Protein similarity
  BG084345 cDNA clone H3099F05 5' read Protein similarity
  BI735850 cDNA clone IMAGE:5365808 retina 5' read
  BB598856 cDNA clone C820002L03 pancreas 5' read