Motif Matrices

a a t g 1+3+4+4 = 12

c a t g 1+3+4+4 = 12

g a t g 1+3+4+4 = 12

t g t g 1+1+4+4 = 10

a 1 3 0 0

c 1 0 0 0

g 1 1 0 4

t 1 0 4 0

Align and calculate frequencies.

Note: Higher order correlations lost.

Score test sets:

a c c c 1+0+0+0 = 1

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