massspec/fpeak.h File Reference

a file that includes the definitions for the functions used for fitted peaks (fpeaks) More...

#include "fpeakpointer_set.h"

Go to the source code of this file.

Data Structures
struct	FPeak2i
struct	FPeak2iAuxParamIndex
Typedefs
typedef FPeak2i	FPeak2i
typedef FPeak2i *	FPeak2iArray
typedef FPeak2i *	FPeak2iPointer
Enumerations
enum	{   FPEAK_METRIC_MZ_WIDTH_OK = 0x00000001, FPEAK_METRIC_RT_WIDTH_OVER = 0x00000002, FPEAK_METRIC_MZ_WIDTH_OVER = 0x00000004, FPEAK_METRIC_RT_WIDTH_UNDER = 0x00001000,   FPEAK_METRIC_MZ_WIDTH_UNDER = 0x00002000, FPEAK_METRIC_MZ_DISPL_OVER = 0x00100000 }
Functions
void	FPeak2iAuxParamIndex_sortByAuxParam (FPeak2iAuxParamIndex *pfpeaks, int nPeaks)
FPeak2i	FPeak2i_create (int scan, int bin, float *param)
void	FPeak2i_destroy (FPeak2i *peak)
FPeak2i *	FPeak2i_new ()
void	FPeak2i_fprint (FILE *fp, FPeak2i fpeak)
void	FPeak2i_fprintln (FILE *fp, FPeak2i fpeak)
void	FPeak2i_fprintWithCurve (FILE *fp, FPeak2i fpeak)
void	FPeak2i_fprintlnWithCurve (FILE *fp, FPeak2i fpeak)
char *	FPeak2i_toString (FPeak2i *fpeak)
FPeak2i	FPeak2i_cpyFPeak2i (FPeak2i aa)
void	FPeak2i_copy (FPeak2i *fpk, FPeak2iPointer aa)
Peak2i	FPeak2i_getPeak2i (FPeak2i peak)
Peak2i	FPeak2i_getPeak2iFitted (FPeak2i *peak, Experiment *expmnt)
Peak2f	FPeak2i_getPeak2f (FPeak2i peak)
float	FPeak2i_getMZ (FPeak2i *peak)
float	FPeak2i_getZ (FPeak2i *peak)
float	FPeak2i_hasZ (FPeak2i *peak)
float	FPeak2i_getParam (FPeak2i *peak, int params)
int	FPeak2i_areParametersPositive (FPeak2i fpeak)
int	FPeak2i_cmpBySamplingCoordinates (const void *p1, const void *p2)
int	FPeak2i_cmpByAbundance (const void *p1, const void *p2)
FPeak2i *	FPeak2iArray_create (int size)
FPeak2i *	FPeak2iArray_copy (FPeak2i *fpeaks, int npeaks)
void	FPeak2iArray_destroy (FPeak2i **peak, int nSize)
void	FPeak2iArray_freeParam (FPeak2i *peak, int nSize)
float *	FPeak2iArray_getFloatArray (FPeak2i *pfpeaks, int size, int param)
float *	FPeak2iArray_getParamArray (FPeak2i *pfpeaks, int size, ParameterName params, int *nParameters)
int *	FPeak2iArray_getCurveArray (FPeak2i *fpk, int npeaks)
Peak2i *	FPeak2iArray_getPeak2iArray (FPeak2i *peaks, int npeaks)
Peak2i *	FPeak2iArray_getPeak2iArrayFitted (FPeak2i *peaks, int npeaks, Experiment *expmnt)
void	FPeak2iArray_sortByMZJ (FPeak2i *pfpeaks, int nPeaks)
void	FPeak2iArray_sortByMOZ (FPeak2i *pfpeaks, int nPeaks)
void	FPeak2iArray_sortByAbundance (FPeak2i *pfpeaks, int nPeaks)
int	FPeak2iArray_countFPeaksOfCurve (FPeak2i *array, int start, int stop, int curve)
void	FPeak2iArray_fprintRestrictCurve (FILE *fp, FPeak2i *array, int start, int stop, int curve)
void	FPeak2iArray_fprint (FILE *fp, FPeak2i *array, int start, int stop)
void	FPeak2iArray_fprintValid (FILE *fp, FPeak2i *array, int start, int stop)
void	FPeak2iArray_fprintWithCurve (FILE *fp, FPeak2i *array, int start, int stop)
void	FPeak2iArray_printParam (FPeak2i *array, int npeaks, int parameter)
void	FPeak2iArray_setElement (const void *array, int index, const void *data)
FPeak2iPointer *	FPeak2iArray_getFPeak2iPointerArray (FPeak2i *peaks, int npeaks)
int	FPeak2iArray_getIndexWithNegativeParam (FPeak2i *array, int npeaks)
FPeak2iPointer *	FPeak2iArray_getFPeak2iPointerArrayWithRestrictions (FPeak2i *peaks, int npeaks, PeakRestrictions *restr, int *npeaks_pass)
void	FPeak2iArray_transformSamplingCoordinates (FPeak2iArray *fpeaks, int npeaks, int type, Rectangle4i rect)
void	FPeak2iArray_transformSamplingCoordinates_2 (FPeak2i **fpeaks, int npeaks, Rectangle4i child, Rectangle4i parent)
void	FPeak2iArray_transformSamplingCoordinates_3 (FPeak2i **fpeaks, int npeaks, Rectangle4i child, Rectangle4i parent)
FPeak2i *	FPeak2iArray_getInitialConditions (int curve, struct Map2D *map, Peak2i *peaks, int npeaks)
int	FPeak2iArray_removePeaksScanWindow (FPeak2i *array_in, int *npeaks_in, FPeak2i *array_out, int *npeaks_out, int scan_mean, int scan_width)
int	FPeak2iArray_getLastIndexOfValid (FPeak2i *pFPeaks, int nFPeaks, int limit)
FPeak2iPointer	FPeak2iPointer_copy (FPeak2iPointer aa)
int	FPeak2iPointer_cmpBySamplingCoordinates (const void *p1, const void *p2)
int	FPeak2iPointer_cmpByMZJ (const void *p1, const void *p2)
int	FPeak2iPointer_cmpByMOZ (const void *p1, const void *p2)
int	FPeak2iPointer_getSegment (FPeak2iPointer fpeak, struct Map2D *mask)
FPeak2iPointer *	FPeak2iPointerArray_copyPointersOnly (FPeak2iPointer *aa, int n)
FPeak2iPointer *	FPeak2iPointerArray_copy (FPeak2iPointer *aa, int n)
FPeak2iPointer *	FPeak2iPointerArray_copyPart (FPeak2iPointer *in, int start, int stop)
Peak2i *	FPeak2iPointerArray_getPeak2iArray (FPeak2iPointer *peaks, int npeaks)
float *	FPeak2iPointerArray_getFloatArray (FPeak2iPointer *pfpeaks, int size, int param)
void	FPeak2iPointerArray_sortByMZJ (FPeak2iPointer *pfpeaks, int nPeaks)
void	FPeak2iPointerArray_sortByMOZ (FPeak2iPointer *pfpeaks, int nPeaks)
FPeak2i *	FPeak2iPointerArray_getFPeak2iArray (FPeak2iPointer *peaks, int npeaks)
void	FPeak2iPointerArray_destroy (FPeak2iPointer **array, int nsize)
FPeak2iPointer *	FPeak2iPointerArray_create (int size)
void	FPeak2iPointerArray_fprint (FILE *fp, FPeak2iPointer *array, int start, int stop)
void	FPeak2iPointerArray_fprintWithCurve (FILE *fp, FPeak2iPointer *array, int start, int stop)
void	FPeak2iPointerArray_fprintWithPos (FILE *fp, FPeak2iPointer *array, Map2DPositionPointer *pos_array, int start, int stop)
void	FPeak2iPointerArray_setElement (const void *array, int index, const void *data)

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Detailed Description

a file that includes the definitions for the functions used for fitted peaks (fpeaks)

Author:

Kyriacos C. Leptos

Date:

2004-05-04

Details.

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