sequence/sequest.h

#ifndef _SEQUEST_H_
#define _SEQUEST_H_



#define MAX_DTA_QUERY 10
#define MAX_NO_DTA_FILES 10
#define MAX_NO_MS2_SCANS_PER_DTA 10

extern char*  SEQUEST_DATA_PATH;

#include "sequence/dta_file.h"

typedef struct
{
        int *start_scan;
        int *stop_scan;
        int *charge;
        int *pos;
        int     nsize;
} SequestIndexFile;

typedef struct
{
        int* array;
        int  narray;
} SequestQueryResult;

typedef struct
{
        int                     *start_scan;
        int                     *stop_scan;
        int                     *charge;
        float           *parent;
        float           *xcorr;
        MQString        *scoring_peptide;
        int                     nsize;
} SequestPeptideFile;

typedef struct
{
        int   nPeaks;
        int** pMS2Indices;  
} ZTASection;

typedef struct
{
        int                     nSections;
        ZTASection *pSections;
        int                     nMS2ScansScored;
} ZTAFile;

ZTAFile ZTAFile_load(char* zta_filename, char* ms2_experiment);
int             ZTAFile_doesMS2ExperimentExist(char* filename, char* ms2_exp_name);

void _translateScan(int* scan, Experiment* s_expmnt, Experiment* q_expmnt);

#include "sequence/sequest_xcorr_filter.h"
#include "sequence/sequest_scoring_peptide.h"

#include "sequence/sequest_summary_entry.h"
#include "sequence/sequest_summary_file.h"

#include "sequence/sequest_output_file.h"

#include "sequence/dtatoms2index.h"
#include "sequence/ms2todtaindex.h"
#include "sequence/ms2match.h"

#include "sequence/sequest_mapquant_map_file.h"

#endif

---