MapQuant: graph/graph3Dget.h Source File

00001 #ifndef _GRAPH3D_GET_H_ 00002 #define _GRAPH3D_GET_H_ 00003 00004 /* ******************** PEAK_2I / FPEAK_2I ****************** */ 00005 00006 Peak2f Graph3D_getFPeak2iInitCoord(Graph3D* graph, FPeak2i* peaks); 00007 Peak2f* Graph3D_getFPeak2iArrayInitCoord(Graph3D* graph, FPeak2i* peaks, int npeaks); 00008 00009 Peak2f Graph3D_getFPeak2iFittedCoord(Graph3D* graph, FPeak2i* peaks); 00010 Peak2f* Graph3D_getFPeak2iArrayFittedCoord(Graph3D* graph, FPeak2i* peaks, int npeaks); 00011 00012 Peak2f Graph3D_getPeak2iInitCoord(Graph3D* graph, Peak2i* peak); 00013 Peak2f* Graph3D_getPeak2iArrayInitCoord(Graph3D* graph, Peak2i* peaks, int npeaks); 00014 00015 //Peak2f* FPeak2iArray_getPeak2fArrayWithBinom(FPeak2i* peaks, int* npeaks); 00016 00017 MQString* FPeak2iArray_getChargeStringArray(FPeak2i* array, int narray); 00018 MQString* FPeak2iArray_getAbundanceStringArray(FPeak2i* array, int narray); 00019 00020 Peak2f* Graph3D_getFPeak2iPointerArrayInitCoord(Graph3D* graph, FPeak2iPointer* peaks, int npeaks); 00021 00022 /* ******************** SEQUEST_MAPQUANT_MAP_FILE ****************** */ 00023 00024 Peak2f* Graph3D_getSequestMapQuantMapFilePeaks(Graph3D* graph, SequestMapQuantMapFile* ssf); 00025 Peak2f* Graph3D_getSequestMapQuantMapFileMS2EventsConnections(Graph3D* graph, SequestMapQuantMapFile* ssf, int* npeaks); 00026 Peak2f* Graph3D_getSequestMapQuantMapFileFPeak2iLinks(Graph3D* graph, SequestMapQuantMapFile* ssf, int* npeaks); 00027 Peak2f* Graph3D_getSequestMapQuantMapFileRectanglePeaks(Graph3D* graph, SequestMapQuantMapFile* ssf); 00028 00029 /* ******************** SEQUEST_SUMMARY_FILE ****************** */ 00030 00031 Peak2f* Graph3D_getSequestSummaryFileMS2Events(Graph3D* graph, SequestSummaryFile* ssf); 00032 00033 Peak2f* SequestSummaryFile_getTranslatedPeak2fArray(SequestSummaryFile* ssf, Experiment* q_expmnt); 00034 Peak2f* SequestSummaryFile_getRealPeak2fArray(SequestSummaryFile* ssf); 00035 00036 /* ******************** PEAK_GROUP_ARRAY ****************** */ 00037 00038 00039 Peak2f* Graph3D_getPeakGroupArrayFPeak2iInitPos(Graph3D* graph, PeakGroup* pPeakGroups, int nPeakGroups, int* npeaks); 00040 Peak2f* Graph3D_getPeakGroupArrayCenterOfMass (Graph3D* graph, PeakGroup* pPeakGroups, int nPeakGroups, int* npeaks); 00041 Peak2f* Graph3D_getPeakGroupArrayAvgInitScan (Graph3D* graph, PeakGroup* pPeakGroups, int nPeakGroups, int* npeaks); 00042 00043 Byte* PeakGroupArray_getColorArrayFPeaks(PeakGroup* pPeakGroups, int nPeakGroups); 00044 Byte* PeakGroupArray_getColorArraySingle(PeakGroup* pPeakGroups, int nPeakGroups); 00045 Byte* PeakGroupArray_getColorArrayDouble(PeakGroup* pPeakGroups, int nPeakGroups); 00046 00047 /* ******************** MS_MS_SPECTRUM_ARRAY ****************** */ 00048 00049 Peak2f Graph3D_getMSMSHeaderMS2Event(Graph3D* graph, MS_MS_SpectrumHeader* header); 00050 Peak2f* Graph3D_getMSMSHeaderArrayMS2Event(Graph3D* graph, MS_MS_SpectrumHeader* array, int size); 00051 Peak2f Graph3D_getMQScanHeaderMS2Event(Graph3D* graph, MQScanHeader* header); 00052 Peak2f* Graph3D_getMQScanHeaderArrayMS2Event(Graph3D* graph, MQScanHeader* array, int size); 00053 00054 #endif