sequence/dta_file.h

#ifndef _DTA_FILE_H_
#define _DTA_FILE_H_

#define DTA_EXT "dta"

typedef struct
{
        char* szExperimentName;
        int   start_scan;
        int   stop_scan;
        int   charge;
        int*  scans;
} DTAFile;


void            DTAFile_init (DTAFile* dtafile);

int                     DTAFile_cmpByScanBounds(const void *p1, const void *p2);
int                     DTAFile_cmp(const void *p1, const void *p2);

void            DTAFile_fprint(FILE* fp, DTAFile dta);
char*           DTAFile_toString(DTAFile dtafile);
void            DTAFile_set  (DTAFile* dtafile, char* filename);
Experiment* DTAFile_getExpmntPointer(DTAFile* dtafile);
int                     DTAFile_getAvgParentMSScan(DTAFile* dtafile);
char*           DTAFile_getFilename( char* expname, 
                                                                int scan_start, 
                                                                int scan_stop, 
                                                                int charge);

int DTAFile_extractFromOpenRawMS2Archive(Experiment* expmnt, int charge_start, int charge_stop, char* path_of_experiment_folder);
int DTAFile_extract(Experiment* expmnt, int charge_start, int charge_stop, char* path_of_experiment_folder);

DTAFile*        DTAFileArray_create(int nSize);
DTAFile**       DTAFilePointerArray_create(int nSize, int nAlloc);

typedef char* DTAFilename;

int DTAFilename_getCharge(DTAFilename dtafile);

#endif

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