MapQuant: massspec/segment.h Source File

00001 #ifndef _SEGMENT_H_ 00002 #define _SEGMENT_H_ 00003 00004 /* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University 00005 Release Date: 2004-11-01 00006 Part of the MapQuant suite library "massspec.lib" 00007 */ 00008 00026 struct Segment 00027 { 00028 int nStatus; 00029 00030 MQTileID bTile; 00031 int nIndex; 00032 00033 Attributes attr; 00034 00035 FPeak2i* pFPeaks; 00036 FPeak2iPointer* pPFPeaks; 00037 00038 int nFPeaks; 00039 float dChiSquare; 00040 int nIterations; 00041 }; 00042 00043 typedef struct Segment Segment; 00044 00045 void Segment_fprint (FILE* fp, Segment seg); 00046 void Segment_destroy (Segment* segment); 00047 Segment Segment_copy(Segment *segm); 00048 void Segment_validatePositivePeaks(Segment* segment); 00049 void Segment_init(Segment* segment, Attributes* attr); 00050 Segment* SegmentArray_create (int nSegments); 00051 Segment* SegmentArray_getUsingIndexArray(Segment* array, int* pIndexArray, int nIndices); 00052 void SegmentArray_destroy(Segment** pSegmentArray, int nSegments); 00053 void Segment_createFromFPeak2iArray(Segment* segment, FPeak2i* pFPeaks, int size); 00054 00055 00056 FPeak2i* SegmentArray_getFPeaksUsingIndexArray(Segment* array, int* index_array, int nSegments, 00057 int* nPeaks); 00058 00059 00060 FPeak2i* SegmentArray_getFPeaks(Segment* array, int nSegments, int* nFPeaks); 00061 void SegmentArray_markSegmentsContainingPeaks( Segment* pSegment, int nSegment, 00062 Peak2i* peaks, int npeaks, 00063 Map2D* map, float dMZTolerance, int nScanTolerance); 00064 00065 00066 typedef struct 00067 { 00068 FPeak2iPointer fpeak; 00069 int segment; 00070 } FPeak2iToSegmentIndex; 00071 00072 typedef struct 00073 { 00074 char* szSession; 00075 int nSegment; 00076 } SegmentQuery; 00077 00078 FPeak2iToSegmentIndex* SegmentArray_getFPeak2iToSegmentIndex(Segment* pSegments, 00079 int nSegments, 00080 int nFPeaks); 00081 void SegmentArray_sortByTileAndSegment(Segment* pArray, int nArray); 00082 00083 void FPeak2iToSegmentIndex_sortByFPeak2iPointerSamplingCoordinates(FPeak2iToSegmentIndex* fpk2sgm, int size); 00084 int FPeak2iToSegmentIndex_queryBySamplingCoordinates(FPeak2iToSegmentIndex* fpk2sgm, int size, int scan, int bin); 00085 00086 int SegmentArray_countFPeaks(Segment* pSegments, int nSegments); 00087 int SegmentArray_queryBySamplingCoordinates(Segment* pSegments, int nSegments, int nFPeaks, int scan, int bin); 00088 Segment* SegmentArray_queryByTileAndSegment(Segment* pArray, int nArray, MQTileID bTile, int nSegment); 00089 #endif 00090 00091 00092 00093