MapQuant: massspec/image.h Source File

00001 #ifndef _IMAGE_H_ 00002 #define _IMAGE_H_ 00003 00004 /* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University 00005 Release Date: 2004-11-01 00006 Part of the MapQuant suite library "massspec.lib" 00007 */ 00008 00009 #define MASK -2 00010 #define WSHED 0 00011 #define INIT -1 00012 00013 extern int SEGMENTOR_MAX_NO_ATTRIBUTES; 00014 00015 void labelContour(struct Map2D *SMAP, struct Map2D *LMAP, Peak2i peak, float mval); 00016 void filterLMAPWithAttributes(struct Map2D *MAP, Attributes* attr, int nsize, Attributes restr); 00017 int estimatePeakWidths(struct Map2D* SMAP, Peak2i* p2iiPEAKS, int no_peaks, Peak2i PEAK, float* sigma_t, float *sigma_m); 00018 00019 00020 Attributes* EstimateWidths(struct Map2D *SMAP, struct Map2D *LMAP, 00021 Peak2i* p2iiPEAKS, int no_peaks, 00022 int* no_cc, int* no_succ_cc); 00023 00024 Attributes* labelConnectedComponents(Map2D *SMAP, Map2D *LMAP, 00025 Peak2i* p2iiPEAKS, int no_peaks, 00026 int threshold, 00027 int* no_cc, int* no_succ_cc); 00028 00029 Attributes* labelConnectedComponentsSE(Map2D *SMAP, struct Map2D *LMAP, 00030 Peak2i* p2iiPEAKS, int no_peaks, 00031 int threshold, 00032 int* no_cc, int* no_succ_cc, char* szStructElemName); 00033 00034 Attributes* labelMap2D_SE( Map2D *IMAP, Map2D *OMAP, 00035 float threshold, int* no_cc, 00036 char* szStructElemName1, 00037 char* szStructElemName2); 00038 00039 int Image_removeStreaks(Map2D* map, PeakFinder* pf); 00040 00041 00042 ArrayDomain* Peak3iifArray_bin(Peak3iif *peaks, int npeaks, int *nisoypses, int abubinsize); 00043 00044 int applyErosionToMapSE(struct Map2D *IMAP, struct Map2D *OMAP, char* szStructElemName); 00045 int applyDilationToMapSE(struct Map2D *IMAP, struct Map2D *OMAP, char* szStructElemName); 00046 int applyOpeningToMapSE(struct Map2D *out, struct Map2D *in, char* szStructElemName); 00047 00048 Attributes* performWatershed(struct Map2D* IMAP, struct Map2D* LMAP, 00049 Peak2i* peaks, int npeaks, 00050 ArrayDomain* isoypses, int nisoypses, int* nlabels); 00051 00052 Attributes* performWatershedSegmentation(struct Map2D* IMAP, struct Map2D* OMAP, int* nlabels); 00053 00054 Attributes* performWatershedSegmentationWithRestrictions(struct Map2D* IMAP, struct Map2D* OMAP, 00055 PeakRestrictions SR, 00056 int* nlabels); 00057 00058 int MapProcessor_applyWatershedSegmentation(struct Map2D* IMAP, struct Map2D* OMAP); 00059 00060 00061 00062 00063 00064 00065 #endif 00066