MapQuant: massspec/segment_handler.h Source File

00001 #ifndef _SEGMENT_HANDLER_H_ 00002 #define _SEGMENT_HANDLER_H_ 00003 00004 /* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University 00005 Release Date: 2004-11-01 00006 Part of the MapQuant suite library "massspec.lib" 00007 */ 00008 00009 #define SEGMENT_HANDLER_MAX_NO_TILES 2 00010 00021 struct SegmentHandler 00022 { 00023 unsigned isInitialized : 1; 00024 unsigned fpeakfileLoaded : 1; 00025 00026 Experiment* expmnt; 00027 char* szSession; 00028 00029 Map2D ppSourceMaps[SEGMENT_HANDLER_MAX_NO_TILES]; 00030 Map2D ppStencilMaps[SEGMENT_HANDLER_MAX_NO_TILES]; 00031 00032 char* szFPeakFilename; 00033 00034 struct PeakGroup PeakGroupPrev; 00035 struct PeakGroup PeakGroupCurr; 00036 struct FPeakFile file; 00037 }; 00038 00039 typedef struct SegmentHandler SegmentHandler; 00040 00041 #define MAX_NO_PG_FPEAKS 1000 00042 00043 enum{ SEGMENT_HANDLER_TILE, SEGMENT_HANDLER_SEAM }; 00044 00045 void SegmentHandler_init(SegmentHandler* sh, char* szExperimnet, char* szSession, char* szFPeaksSource); 00046 void SegmentHandler_destroy(SegmentHandler* sh); 00047 00048 00049 Map2D SegmentHandler_extractMultitileMap(SegmentHandler* sh, Map2DPosition* pos, int size); 00050 00051 void SegmentHandler_updateSourceStencil(SegmentHandler* sh, struct PeakGroup* pg_prev, struct PeakGroup* pg_curr); 00052 int SegmentHandler_update(SegmentHandler* sh, PeakGroup* pg_prev, PeakGroup* pg_curr); 00053 00054 int SegmentHandler_extractPeakGroupMap(SegmentHandler* sh, struct PeakGroup* peakgroup, Map2D* out_map); 00055 int SegmentHandler_extractStencilPeakGroupMap(SegmentHandler* sh, PeakGroup* peakgroup, Map2D* out_map); 00056 00073 int SegmentHandler_extractPeakGroupMapFPeaks(SegmentHandler* sh, struct PeakGroup* peakgroup, FPeak2i* pfpeaks, int *nfpeaks); 00074 00075 00076 00077 #endif 00078 00079