segment_handler.h

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#ifndef _SEGMENT_HANDLER_H_
#define _SEGMENT_HANDLER_H_

/* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University
   Release Date: 2004-11-01
   Part of the MapQuant suite library "massspec.lib" 
*/

#define SEGMENT_HANDLER_MAX_NO_TILES 3

struct SegmentHandler
{
    unsigned            isInitialized   : 1;
    unsigned            fpeakfileLoaded : 1;

    MQExperiment*           expmnt;
    char*               szSession;

    Map2D               ppSourceMaps[SEGMENT_HANDLER_MAX_NO_TILES];
    Map2D               ppStencilMaps[SEGMENT_HANDLER_MAX_NO_TILES];
    
    char*               szFPeakFilename;
    
    PeakGroup   PeakGroupPrev;
    PeakGroup   PeakGroupCurr;
    FPeakFile   file;
};

typedef struct SegmentHandler SegmentHandler;

#define MAX_NO_PG_FPEAKS 1000

enum{ SEGMENT_HANDLER_TILE, SEGMENT_HANDLER_SEAM };

void    SegmentHandler_init(SegmentHandler* sh, char* szExperimnet, char* szSession, char* szFPeaksSource);
void    SegmentHandler_destroy(SegmentHandler* sh);


//Map2D SegmentHandler_extractMultitileMap(SegmentHandler* sh, Map2DPosition* pos, int size);

void    SegmentHandler_updateSourceStencil(SegmentHandler* sh, struct PeakGroup* pg_prev, struct PeakGroup* pg_curr);
int     SegmentHandler_update(SegmentHandler* sh, PeakGroup* pg_prev, PeakGroup* pg_curr);

Map2D*  SegmentHandler_getSourcePointerForTile(SegmentHandler* sh, MQTileID tile);
Map2D*  SegmentHandler_getStencilPointerForTile(SegmentHandler* sh, MQTileID tile);

//int       SegmentHandler_extractPeakGroupMap(SegmentHandler* sh, struct PeakGroup* peakgroup, Map2D* out_map);
//int       SegmentHandler_extractStencilPeakGroupMap(SegmentHandler* sh, PeakGroup* peakgroup, Map2D* out_map);

int     SegmentHandler_extractPeakGroupMapFPeaks(SegmentHandler* sh, struct PeakGroup* peakgroup, FPeak2i* pfpeaks, int *nfpeaks);



#endif

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