fpeak2i_array.h

Go to the documentation of this file.

#ifndef _FPEAK2I_ARRAY_H_
#define _FPEAK2I_ARRAY_H_

/* Copyright (c) Kyriacos Leptos and the President and Fellows of Harvard University
   Release Date: 2004-11-01
   Part of the MapQuant suite library "mqobject.lib" 
*/

// ***************************************************
// *************** FPeak2iArray Functions ************
// ***************************************************

MQString*   FPeak2iArray_getChargeStringArray       (FPeak2i* array, int narray);
MQString*   FPeak2iArray_getAbundanceStringArray    (FPeak2i* array, int narray);
MQString*   FPeak2iArray_getSigmaMZStringArray      (FPeak2i* array, int narray);
MQString*   FPeak2iArray_getSigmaRTStringArray      (FPeak2i* array, int narray);

FPeak2i*    FPeak2iArray_create        (int size);
FPeak2i*    FPeak2iArray_copy          (FPeak2i* fpeaks, int npeaks);
void        FPeak2iArray_destroy       (FPeak2i** peak,  int nSize);
void        FPeak2iArray_freeParam     (FPeak2i* peak,   int nSize);
float*      FPeak2iArray_getFloatArray (FPeak2i* pfpeaks, int size, int param);
float*      FPeak2iArray_getParamArray (FPeak2i* pfpeaks, int size, ParameterName params, int* nParameters);
int*        FPeak2iArray_getCurveArray (FPeak2i* fpk,    int npeaks);
Peak2i*     FPeak2iArray_getPeak2iArray(FPeak2i* peaks,  int npeaks);
Peak2i*     FPeak2iArray_getPeak2iArrayFitted(FPeak2i* peaks, int npeaks, MQExperiment* expmnt);
void        FPeak2iArray_validatePositivePeaks(FPeak2i* array, int size);
void        FPeak2iArray_reset(FPeak2i* array, int array_size);

void        FPeak2iArray_sortByMZJ          (FPeak2i  *pfpeaks, int nPeaks);
void        FPeak2iArray_sortByMOZ          (FPeak2i  *pfpeaks, int nPeaks);
void        FPeak2iArray_sortByAbundance    (FPeak2i  *pfpeaks, int nPeaks);
int         FPeak2iArray_countFPeaksOfCurve (FPeak2i* array, int start, int stop, int curve);
int         FPeak2iArray_countValid         (FPeak2i* array, int start, int stop);
void        FPeak2iArray_fprintRestrictCurve(FILE* fp, FPeak2i* array, int start, int stop, int curve);
void        FPeak2iArray_fprint             (FILE* fp, FPeak2i* array, int start, int stop);
void        FPeak2iArray_fprintValid        (FILE* fp, FPeak2i* array, int start, int stop);
void        FPeak2iArray_fprintWithCurve    (FILE* fp, FPeak2i* array, int start, int stop);
void        FPeak2iArray_printParam         (FPeak2i* array, int npeaks, int parameter);

void        FPeak2iArray_setElement         (const void* array, int index, const void* data);
void        FPeak2iArray_transferElements   (FPeak2i* dest, FPeak2i* source, int source_start, int source_stop);
int         FPeak2iArray_operatorCountCommon(FPeak2i* pa, int na, FPeak2i* pb, int nb);

void        FPeak2iArray_removePeaksWithNegativeParam(FPeak2i* array, int* npeaks);

FPeak2i*    FPeak2iArray_createFromPeak2iArray(Peak2i* peaks, int size);
void        FPeak2iArray_initParam(FPeak2i* peaks, int size, Map2D* map);

FPeak2iPointer* FPeak2iArray_getFPeak2iPointerArray(FPeak2i* peaks, int npeaks);
int             FPeak2iArray_getIndexWithNegativeParam(FPeak2i* array, int npeaks);
FPeak2iPointer* FPeak2iArray_getFPeak2iPointerArrayWithRestrictions(FPeak2i* peaks, int npeaks, 
                                                                    PeakRestrictions* restr, int* npeaks_pass);

void    FPeak2iArray_transformSamplingCoordinates(FPeak2i* fpeaks, int npeaks, int type, Rectangle4i rect);

int     FPeak2iArray_flagFPeaksInFPeak2iArrayAsNonValid(FPeak2i* pFPeaksAll, int nFPeaksAll, FPeak2i* test, int test_size, int rt_bin, int mz_bin);
void    FPeak2iArray_removeFPeaksInFPeak2iPointerArray(FPeak2i* pFPeaksAll, int* nFPeaksAll, FPeak2iPointer* test, int test_size);
int     FPeak2iArray_doesFPeak2iOverlapDiscreteInitial(FPeak2i* array, int size, FPeak2i* peak, int rt_thr, int mz_thr);
int     FPeak2iArray_getLastIndexOfValid(FPeak2i* pFPeaks, int nFPeaks, int limit);

#endif

---